FFCP PHASE1:Hg19::chr3:182880541..182880578,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:182880541..182880578,- to FFCP PHASE1:Hg19::chr3:182880541..182880578,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27074 | |EntrezGene=27074 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14582 | |HGNC=14582 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQV4 | |UniProt=Q9UQV4 | ||
|association_with_transcript=88bp_to_NM_014398,uc003flh.3_5end | |||
|cluster_id=chr3:182880541..182880578,- | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_2_at_LAMP3_5end | |||
|id=chr3:182880541..182880578,- | |||
|ontology_enrichment_celltype=CL:0000066!3.76e-13!254;CL:0000115!6.23e-09!35;CL:0002078!1.30e-08!44;CL:0000076!1.38e-07!62;CL:0000213!3.68e-07!57;CL:0000215!3.68e-07!57;CL:0002139!8.74e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.42e-08;36!CL:0002139;1.98e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.10e-12,253;CL:0000115,1.34e-10,36;CL:0002078,1.53e-09,45;CL:0000213,8.20e-09,58;CL:0000215,8.20e-09,58;CL:0000076,1.50e-08,63;CL:0002139,1.69e-08,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.26e-07!143;DOID:305!2.12e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,9.11e-09,143;DOID:305,4.85e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000464!1.57e-09!104;UBERON:0000466!1.24e-08!126;UBERON:0004119!2.23e-07!169;UBERON:0000925!2.23e-07!169;UBERON:0006595!2.23e-07!169;UBERON:0002553!4.23e-07!70;UBERON:0001007!6.82e-07!155;UBERON:0001555!6.82e-07!155;UBERON:0007026!6.82e-07!155 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0.214100523890983,0.563817616383885,0,0,0,2.53299878168311,0.631719873426831,0.261185628199839,0.737201809504527,2.79120467188971,0.436882744260345,0,0.247532705920093,0,2.01697543935533,3.01347264011988,0.730310090387373,2.43966399395253,0.123121058076788,0.204000691244253,7.20945859399602,0.85870796139317,0.821246550437305,0.502170558379211,26.0569713600514,18.8831355734875,22.0390187678302,0,0,0.309632246632152,0,0.6024118375565,9.98335827450327,0,0,0.587200878669695,1.66198622559563,7.62068900386538,1.95309783644267,0.447830948479849,0.32389366601898,0.77272670290256,0.145398238779565,1.13362783106643,0.242584061187816,0.929716147622738,3.28934310417461,3.71647645074124,3.74000110018796,2.81776777182011,3.54723344832878,7.92915065694223,16.1371170895957,8.12558919566051,0.188242339542605,1.36453075028923,0.449446968890169,4.28517449319264,5.77672248736969,1.91801137739712,1.31940520074686,2.19410023383795,2.98357325372886,14.5104619314292,27.2344907851747,29.272645702792,2.00998932205395,2.60741459210101,1.52032191293582,17.5565855763677,20.2552699793161,19.304205633894,0.211255286311942,0.212604299965044,0,0,0,0,0.285012743741249,0,0,0,0,0,0,0.400395987036012,0,0,0.954053754535364,1.1384259382189,0.587237189370939,0.382273228125229,0,1.68152568894461,0,2.9506465517075,0.786021525498329,0.411202997999018,0.668745981562712,0.651844533267181,1.89379122293893,1.94826728407911,0.445641827540694,0.883817722424512,0.221533894583621,2.16643091012012,2.68991771423918,2.86130564631732,3.12432018746985,0.276350017785848,0.289803085735052,0.741432815810302,1.07016331235885,2.09071047609954,0.793165398882963,1.53288197440768,1.37450978193052,1.01207876807801,0,0,0,0.752875595388864,0.895906278080929,0,0.710331756132051,0.821127996921047,1.00803371612366,0.534880391567015,1.73789284659359,0,0,0.639312809217652,0,0.50133791063589,0.579386075843295,0,0.486634870302636,0.0945348171640679,0,0.351339142772504,2.5540919722054,3.27865759463288,3.33705998505986,6.16640047943898,5.74628133087582,5.98310822334893,0,0,0,1.98762407366705,0,2.08284300964557,1.69592382577203,3.77549492588915,3.57653454522088,1.25396979922086,11.1119206442811,12.4518191940349,31.1290169871143,27.392393563422,31.171156334459,58.8189558691089,11.7652185710678,3.24056779152704,15.8060519062821,19.5340554184768,14.9773269042819,0,0,0.732806975721629,1.31780417436063,0,2.18047026071267,0,1.51956613997496,0,9.75244510545967,2.12801029319014,0.560677600142307,1.06748995729705,0.24666754841716,0,6.46611225934503,1.30769522490767,1.51357427644931,1.72852777344,22.0262145923769,0,0.570471821544449,0.149448680551801,0.23486899728753,1.29498355494505,0,0.61246251376468,0.368502951935304,6.50952421407322,0,0.989067717114227,0,2.87447256726495,0,0.125118519871964,1.38532057742091,0,0,0.45071417671979,1.36118619792025,0.358779271377724,0,0,0,0,0.257640540045629,0.37223371266318,0,0,0,0,0,0,0,0.169560592310488,0.57978255948989,2.45471508531751,1.72082757233402,0.609868530647977,0,0.232387885739037,1.24393266018445,0.504641701751257,0.36497735907583,0,0,0,0,0.721879481669586,0.236613600079688,0.337169380156203,0,0.220587945464788,0.217879444092406,0.71181185733329,0.134831308160164,0.196221465125346,0.38474715694639,7.38155454624648,7.01208869017229,0,0,1.26755034821831,0,0,0,0.737930631258681,0.686271241194102,0.219500570817251,4.49607013030478,1.40740561376283,2.03694579348765,81.4520763275812,2.07986957055916,0,1.507095264676,1.6437217193015,109.141034507372,60.651102147536,68.68174895669,0,0.858486162094873,0.246217006087397,0,0,0,0.839910640994298,1.98485136139341,0.895585227028483,0.290633938513962,1.53353071666084,6.89728533054321,0.352193736052904,0.207328115540772,0.720599767084807,0.25248486685276,0.126995788584338,0,0,5.13217338068116,0.102827492703324,0,0,1.00917975910825,0.43596006883328,0.07333828582095,3.23179289394444,0,0,0,1.04007436911366,0,0,0.532844358032199,1.00084595560703,1.62786481617433,1.64648067356154,0.977208552881205,0.355391948742546,0.791951872933429,0,0,0,0,0,0,1.19812427745791,16.0806710167759,0,0,0,0,0,1.57624608161542,0.862510299438069,0.256686072559497,0.76228387266739,1.30139853857622,0,1.34013012267479,0,2.24702107184155,2.99161459204025,2.07207756718018,0.24538298343828,1.00034104211935,16.8184314693836,0,0.178428988797162,1.10391690523754,0,0.300946099727719,2.27407504055985,26.9029985360513,0,0,0,0,0,0.620304078368662,1.07857100409308,0.853820462427555,0,1.66435439510497,0.30239029332968,0,1.99500565274481,1.68396056659844,2.43464383585832,4.09365799253363,0.64341568457443,0,0,0.177561725313127,0,2.59627214591811,0,2.29632954224082,0.40101294060657,39.8710682092431,0.459257792658427,0,1.44236856455367,3.15839729035188,1.30926073077505,1.56869953835371,0,0.422206515571503,11.3733384070897,9.35515379020836,7.1252252313706,15.4227252690289,0.270946437543853,0.501689773854853,1.78413391131527,4.98645605357235,0.447749509444357,0.877039506583738,0.261435451024901,1.28225062558195,0,24.4033795998227,4.7398865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| ||
|short_description=p2@LAMP3 | |||
}} | }} |
Latest revision as of 23:33, 16 September 2015
Short description: | p2@LAMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LAMP3_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | 88bp_to_NM_014398, uc003flh.3_5end |
EntrezGene: | LAMP3 |
HGNC: | 14582 |
UniProt: | Q9UQV4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.10e-12 | 253 |
endothelial cell | 1.34e-10 | 36 |
meso-epithelial cell | 1.53e-09 | 45 |
lining cell | 8.20e-09 | 58 |
barrier cell | 8.20e-09 | 58 |
squamous epithelial cell | 1.50e-08 | 63 |
endothelial cell of vascular tree | 1.69e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 9.11e-09 | 143 |
carcinoma | 4.85e-07 | 106 |