FFCP PHASE1:Hg19::chr3:50378696..50378715,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:50378696..50378715,+ to FFCP PHASE1:Hg19::chr3:50378696..50378715,+: NSchange) |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-126bp_to_CU689717_5end | |||
|cluster_id=chr3:50378696..50378715,+ | |||
|description=CAGE_peak_1_at_CU689717_5end | |||
|id=chr3:50378696..50378715,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.51e-21!172;CL:0000566!3.51e-21!172;CL:0000988!1.48e-19!182;CL:0002032!1.65e-19!165;CL:0000837!1.65e-19!165;CL:0002031!2.82e-19!124;CL:0000839!3.32e-17!70;CL:0000738!1.16e-16!140;CL:0000763!9.86e-16!112;CL:0000049!9.86e-16!112;CL:0002087!2.94e-15!119;CL:0000557!1.50e-14!71;CL:0000766!6.96e-14!76;CL:0002194!1.86e-11!63;CL:0000576!1.86e-11!63;CL:0000040!1.86e-11!63;CL:0000559!1.86e-11!63;CL:0002009!7.85e-11!65;CL:0000134!4.66e-09!358;CL:0000219!1.16e-08!390;CL:0002274!1.86e-08!5;CL:0000457!1.86e-08!5;CL:0002191!1.86e-08!5;CL:0000097!1.86e-08!5;CL:0000831!1.86e-08!5;CL:0002028!1.86e-08!5;CL:0002320!1.95e-08!365;CL:0000048!1.92e-07!430;CL:0000034!3.30e-07!444;CL:0000723!5.28e-07!436;CL:0000860!8.51e-07!45;CL:0002393!9.69e-07!9;CL:0002397!9.69e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000097;3.44e-43;5!CL:0000163;3.38e-24;9!CL:0002127;5.80e-15;1!CL:0000911;5.80e-15;1!CL:0000814;5.80e-15;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,2.36e-43,5;CL:0002028,2.36e-43,5;CL:0000163,2.75e-24,9;CL:0002127,5.42e-15,1;CL:0000914,5.42e-15,1;CL:0000911,5.42e-15,1;CL:0000814,5.42e-15,1;CL:0002042,5.42e-15,1;CL:0002039,5.42e-15,1;CL:0002040,5.42e-15,1;CL:0002041,5.42e-15,1;CL:0000839,2.70e-09,66;CL:0000557,3.78e-09,67;CL:0000766,1.76e-08,72;CL:0000893,3.82e-08,2;CL:0002489,3.82e-08,2;CL:0000809,3.82e-08,2;CL:0000808,3.82e-08,2;CL:0000894,3.82e-08,2;CL:0000806,3.82e-08,2;CL:0000807,3.82e-08,2;CL:0000805,3.82e-08,2;CL:0002425,3.82e-08,2;CL:0002031,5.01e-08,120;CL:0000738,5.75e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002425;3.95e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.04e-21!102;UBERON:0003061!1.04e-21!102;UBERON:0002193!2.42e-20!112;UBERON:0002371!2.06e-13!80;UBERON:0001474!1.31e-12!86;UBERON:0002405!2.56e-10!115;UBERON:0004765!8.04e-10!101;UBERON:0001434!8.04e-10!101;UBERON:0000178!1.03e-07!15;UBERON:0000179!1.03e-07!15;UBERON:0000463!1.03e-07!15;UBERON:0002384!1.32e-07!375;UBERON:0002204!5.24e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.75e-08;15!UBERON:0000179;1.75e-08;15!UBERON:0000463;1.75e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,4.70e-15,98;UBERON:0003061,4.70e-15,98;UBERON:0002193,1.48e-13,108;UBERON:0000178,1.97e-08,15;UBERON:0000179,1.97e-08,15;UBERON:0000463,1.97e-08,15;UBERON:0002405,2.12e-08,93;UBERON:0002371,5.20e-08,76;UBERON:0001474,2.19e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,2.01523926815932,0.32389366601898,0.77272670290256,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0.236482229888585,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0.425208599930087,0.628975936525128,0.22465726229299,0.450530678524519,0.64290234678832,1.42506371870624,0.59675003159727,0.365328307529268,0,0,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0.560508562981536,0.263384084775077,0,0,0.205601498999509,0.167186495390678,0,0,0,0.222820913770347,0.294605907474837,0.221533894583621,0.270803863765016,0.384273959177026,0.520237390239513,0.822189523018381,1.10540007114339,0.579606171470105,0,0,0,0.453237370790265,0,0,0.506039384039006,0,0,0,0.150575119077773,0.383959833463255,0,0.473554504088034,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.348259474598534,0.531831842075461,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0.326923806226917,0.151357427644931,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.900273288253207,0.412210116953756,1.03056216018252,0,0.337552664482532,0.0974370051611986,0,0,0.484938170456436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.220587945464788,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72351904261178,0.234004265139238,0.297262324577456,0,0,0,0.0895585227028483,0,0,0.492663237895943,5.54705134283324,4.14656231081544,1.58531948758658,2.27236380167484,0.380987365753014,0,1.17217447210047,0,0,0.600686115687835,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,4.9317463357152,0.788123040807709,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.106727557803444,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.784306353074702,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0.322260734604821,0,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,1.13929437434833,0.952927101831156,0.411362273086194,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0.59873811429845,0,0,0,0,0,0,0,0,0.321176150207399,0.605399121573143,0.425846237690326,0.687010689511529,0,0.223676107892416,0.166849141711909,0.390776190804081,0.278406173895242,0,0,0,0,0,0,0,1.33732061132974,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.139423744278603,0,0,0,0,0,0,0,0,0,0.156980256395025,0.332423363800313,0,0,0,0,0.317873157960757,0,0,0,0,0,0.0884575645033392,0,0,0,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0.219267951258557,0.246346371159628,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533458648470704,0.172214979660816,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164201178899891,0,0,0.383829398097213,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,2.01523926815932,0.32389366601898,0.77272670290256,0,0,0,0.232429036905685,0,0.309706370895104,0,0,0.236482229888585,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0.425208599930087,0.628975936525128,0.22465726229299,0.450530678524519,0.64290234678832,1.42506371870624,0.59675003159727,0.365328307529268,0,0,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0.560508562981536,0.263384084775077,0,0,0.205601498999509,0.167186495390678,0,0,0,0.222820913770347,0.294605907474837,0.221533894583621,0.270803863765016,0.384273959177026,0.520237390239513,0.822189523018381,1.10540007114339,0.579606171470105,0,0,0,0.453237370790265,0,0,0.506039384039006,0,0,0,0.150575119077773,0.383959833463255,0,0.473554504088034,0,0.201606743224732,0.267440195783507,0.289648807765598,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.348259474598534,0.531831842075461,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0.354668382198357,0,0,0,0,0,0.326923806226917,0.151357427644931,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.900273288253207,0.412210116953756,1.03056216018252,0,0.337552664482532,0.0974370051611986,0,0,0.484938170456436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0.337169380156203,0,0.220587945464788,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72351904261178,0.234004265139238,0.297262324577456,0,0,0,0.0895585227028483,0,0,0.492663237895943,5.54705134283324,4.14656231081544,1.58531948758658,2.27236380167484,0.380987365753014,0,1.17217447210047,0,0,0.600686115687835,0.285826432630578,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,4.9317463357152,0.788123040807709,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0,0.106727557803444,0,0,0,0.496215615637554,0.306923946576125,0.280660094433074,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0.784306353074702,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0.322260734604821,0,0.255679882248303,0,0,0,0,0,0,0,0,0,0,0.869932992075073,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0.329294892959902,0,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0,1.13929437434833,0.952927101831156,0.411362273086194,1.29694662238543,1.08006287447623,0.79312517629427,0,0,0,0,0,0,0,0.59873811429845,0,0,0,0,0,0,0,0,0.321176150207399,0.605399121573143,0.425846237690326,0.687010689511529,0,0.223676107892416,0.166849141711909,0.390776190804081,0.278406173895242,0,0,0,0,0,0,0,1.33732061132974,0,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0,0,0.511572370226872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0.139423744278603,0,0,0,0,0,0,0,0,0,0.156980256395025,0.332423363800313,0,0,0,0,0.317873157960757,0,0,0,0,0,0.0884575645033392,0,0,0,0.208843899010911,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0967563312890851,0.219267951258557,0.246346371159628,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.533458648470704,0.172214979660816,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0.0939839179798536,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p1@CU689717 | |||
}} | }} |
Latest revision as of 22:10, 29 July 2015
Short description: | p1@CU689717 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CU689717_5end |
Coexpression cluster: | NA |
Association with transcript: | -126bp_to_CU689717_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 2.36e-43 | 5 |
basophil mast progenitor cell | 2.36e-43 | 5 |
endocrine cell | 2.75e-24 | 9 |
innate effector T cell | 5.42e-15 | 1 |
immature NK T cell | 5.42e-15 | 1 |
effector T cell | 5.42e-15 | 1 |
mature NK T cell | 5.42e-15 | 1 |
immature NK T cell stage IV | 5.42e-15 | 1 |
immature NK T cell stage I | 5.42e-15 | 1 |
immature NK T cell stage II | 5.42e-15 | 1 |
immature NK T cell stage III | 5.42e-15 | 1 |
myeloid lineage restricted progenitor cell | 2.70e-09 | 66 |
granulocyte monocyte progenitor cell | 3.78e-09 | 67 |
myeloid leukocyte | 1.76e-08 | 72 |
thymocyte | 3.82e-08 | 2 |
double negative thymocyte | 3.82e-08 | 2 |
double-positive, alpha-beta thymocyte | 3.82e-08 | 2 |
DN4 thymocyte | 3.82e-08 | 2 |
DN1 thymic pro-T cell | 3.82e-08 | 2 |
DN2 thymocyte | 3.82e-08 | 2 |
DN3 thymocyte | 3.82e-08 | 2 |
immature single positive thymocyte | 3.82e-08 | 2 |
early T lineage precursor | 3.82e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 5.01e-08 | 120 |
leukocyte | 5.75e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 4.70e-15 | 98 |
blood island | 4.70e-15 | 98 |
hemolymphoid system | 1.48e-13 | 108 |
blood | 1.97e-08 | 15 |
haemolymphatic fluid | 1.97e-08 | 15 |
organism substance | 1.97e-08 | 15 |
immune system | 2.12e-08 | 93 |
bone marrow | 5.20e-08 | 76 |
bone element | 2.19e-07 | 82 |