FFCP PHASE1:Hg19::chr4:40198602..40198614,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:40198602..40198614,+ to FFCP PHASE1:Hg19::chr4:40198602..40198614,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=399 | |EntrezGene=399 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=686 | |HGNC=686 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000513894,ENST00000514839_5end | |||
|cluster_id=chr4:40198602..40198614,+ | |||
|coexpression_cluster_id=C47 | |||
|description=CAGE_peak_3_at_RHOH_5end | |||
|id=chr4:40198602..40198614,+ | |||
|ontology_enrichment_celltype=CL:0000542!2.00e-45!53;CL:0000051!2.00e-45!53;CL:0000838!1.23e-44!52;CL:0000738!3.37e-40!140;CL:0000037!1.75e-37!172;CL:0000566!1.75e-37!172;CL:0002087!4.53e-35!119;CL:0002031!3.20e-34!124;CL:0000988!1.11e-33!182;CL:0002032!3.08e-32!165;CL:0000837!3.08e-32!165;CL:0000945!1.90e-25!24;CL:0000826!1.90e-25!24;CL:0000084!1.52e-17!25;CL:0000827!1.52e-17!25;CL:0000236!2.32e-17!14;CL:0000791!5.59e-17!18;CL:0000789!5.59e-17!18;CL:0002420!5.59e-17!18;CL:0002419!5.59e-17!18;CL:0000790!5.59e-17!18;CL:0000625!6.46e-12!11;CL:0000624!4.70e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000542;4.86e-37;53!CL:0000945;2.20e-34;24!CL:0000084;5.22e-28;25!CL:0000791;1.04e-25;18!CL:0000789;1.04e-25;18!CL:0002419;1.04e-25;18!CL:0000236;1.17e-24;13!CL:0000625;2.01e-16;11!CL:0000624;7.44e-13;6!CL:0002087;8.44e-12;104!CL:0000738;7.95e-10;136!CL:0000898;3.38e-07;3!CL:0000784;6.16e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.95e-67,52;CL:0000542,1.64e-65,53;CL:0000051,1.64e-65,53;CL:0000738,1.26e-43,136;CL:0002087,8.42e-41,115;CL:0002031,4.03e-39,120;CL:0000945,2.15e-34,24;CL:0000826,2.15e-34,24;CL:0000037,4.30e-32,168;CL:0000988,1.32e-29,177;CL:0000084,3.97e-28,25;CL:0000827,3.97e-28,25;CL:0002032,2.07e-26,161;CL:0000837,2.07e-26,161;CL:0000791,8.70e-26,18;CL:0000789,8.70e-26,18;CL:0002420,8.70e-26,18;CL:0002419,8.70e-26,18;CL:0000790,8.70e-26,18;CL:0000236,1.18e-22,14;CL:0000625,1.85e-16,11;CL:0000624,6.66e-13,6;CL:0000898,3.39e-07,3;CL:0000134,4.69e-07,354;CL:0000784,8.34e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000051;4.86e-37;53!CL:0000790;1.04e-25;18 | |||
|ontology_enrichment_disease=DOID:0060058!1.55e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;7.71e-13;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.13e-12,10 | |||
|ontology_enrichment_uberon=UBERON:0002390!6.91e-10!102;UBERON:0003061!6.91e-10!102;UBERON:0002193!2.55e-09!112;UBERON:0000178!3.07e-07!15;UBERON:0000179!3.07e-07!15;UBERON:0000463!3.07e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004177;2.75e-11;5!UBERON:0005057;2.75e-11;5!UBERON:0002346;7.76e-09;4!UBERON:0000923;7.76e-09;4!UBERON:0010316;7.76e-09;4!UBERON:0005291;7.76e-09;4!UBERON:0002390;2.63e-07;32!UBERON:0002106;2.95e-07;3!UBERON:0002050;4.72e-07;5!UBERON:0005423;4.72e-07;5!UBERON:0000178;5.54e-07;15!UBERON:0000179;5.54e-07;15!UBERON:0000463;5.54e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,5.97e-11,7;UBERON:0005057,5.97e-11,7;UBERON:0002106,3.25e-07,3;UBERON:0004854,3.25e-07,3;UBERON:0009034,3.25e-07,3;UBERON:0002095,3.25e-07,3;UBERON:0004782,3.25e-07,3;UBERON:0003281,3.25e-07,3;UBERON:0009664,3.25e-07,3;UBERON:0002296,3.25e-07,3;UBERON:0005602,3.25e-07,3;UBERON:0001179,3.25e-07,3;UBERON:0006293,3.25e-07,3;UBERON:0002193,3.86e-07,108;UBERON:0000178,6.22e-07,15;UBERON:0000179,6.22e-07,15;UBERON:0000463,6.22e-07,15;UBERON:0002390,6.99e-07,98;UBERON:0003061,6.99e-07,98 | |||
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| ||
|short_description=p3@RHOH | |||
}} | }} |
Latest revision as of 18:07, 17 September 2015
Short description: | p3@RHOH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RHOH_5end |
Coexpression cluster: | C47_CD19_Burkitt_acute_xeroderma_tonsil_lymphoma_appendix |
Association with transcript: | 0bp_to_ENST00000513894, ENST00000514839_5end |
EntrezGene: | RHOH |
HGNC: | 686 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.95e-67 | 52 |
lymphocyte | 1.64e-65 | 53 |
common lymphoid progenitor | 1.64e-65 | 53 |
leukocyte | 1.26e-43 | 136 |
nongranular leukocyte | 8.42e-41 | 115 |
hematopoietic lineage restricted progenitor cell | 4.03e-39 | 120 |
lymphocyte of B lineage | 2.15e-34 | 24 |
pro-B cell | 2.15e-34 | 24 |
hematopoietic stem cell | 4.30e-32 | 168 |
hematopoietic cell | 1.32e-29 | 177 |
T cell | 3.97e-28 | 25 |
pro-T cell | 3.97e-28 | 25 |
hematopoietic oligopotent progenitor cell | 2.07e-26 | 161 |
hematopoietic multipotent progenitor cell | 2.07e-26 | 161 |
mature alpha-beta T cell | 8.70e-26 | 18 |
alpha-beta T cell | 8.70e-26 | 18 |
immature T cell | 8.70e-26 | 18 |
mature T cell | 8.70e-26 | 18 |
immature alpha-beta T cell | 8.70e-26 | 18 |
B cell | 1.18e-22 | 14 |
CD8-positive, alpha-beta T cell | 1.85e-16 | 11 |
CD4-positive, alpha-beta T cell | 6.66e-13 | 6 |
naive T cell | 3.39e-07 | 3 |
mesenchymal cell | 4.69e-07 | 354 |
plasmacytoid dendritic cell | 8.34e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 5.97e-11 | 7 |
immune organ | 5.97e-11 | 7 |
spleen | 3.25e-07 | 3 |
gastrointestinal system mesentery | 3.25e-07 | 3 |
stomach region | 3.25e-07 | 3 |
mesentery | 3.25e-07 | 3 |
gastrointestinal system serosa | 3.25e-07 | 3 |
mesentery of stomach | 3.25e-07 | 3 |
gut mesentery | 3.25e-07 | 3 |
dorsal mesentery | 3.25e-07 | 3 |
dorsal mesogastrium | 3.25e-07 | 3 |
peritoneal cavity | 3.25e-07 | 3 |
spleen primordium | 3.25e-07 | 3 |
hemolymphoid system | 3.86e-07 | 108 |
blood | 6.22e-07 | 15 |
haemolymphatic fluid | 6.22e-07 | 15 |
organism substance | 6.22e-07 | 15 |
hematopoietic system | 6.99e-07 | 98 |
blood island | 6.99e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.13e-12 | 10 |