FFCP PHASE1:Hg19::chr11:118184489..118184513,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:118184489..118184513,+ | |||
|coexpression_cluster_id=C3019 | |||
|description=CAGE_peak_at_chr11:118184489..118184513,+ | |description=CAGE_peak_at_chr11:118184489..118184513,+ | ||
|id=chr11:118184489..118184513,+ | |id=chr11:118184489..118184513,+ | ||
|ontology_enrichment_celltype=CL:0000738!3.64e-33!140;CL:0000037!7.74e-28!172;CL:0000566!7.74e-28!172;CL:0002087!4.27e-26!119;CL:0000988!5.96e-25!182;CL:0000084!6.82e-25!25;CL:0000827!6.82e-25!25;CL:0000791!1.55e-24!18;CL:0000789!1.55e-24!18;CL:0002420!1.55e-24!18;CL:0002419!1.55e-24!18;CL:0000790!1.55e-24!18;CL:0002032!1.02e-22!165;CL:0000837!1.02e-22!165;CL:0002031!1.06e-21!124;CL:0000838!6.83e-19!52;CL:0000542!2.48e-18!53;CL:0000051!2.48e-18!53;CL:0000625!1.63e-15!11;CL:0000766!1.06e-10!76;CL:0000624!1.89e-09!6;CL:0000763!7.90e-08!112;CL:0000049!7.90e-08!112;CL:0002057!1.08e-07!42;CL:0000094!1.37e-07!8;CL:0002194!2.12e-07!63;CL:0000576!2.12e-07!63;CL:0000040!2.12e-07!63;CL:0000559!2.12e-07!63;CL:0002009!5.75e-07!65;CL:0000860!7.97e-07!45 | |ontology_enrichment_celltype=CL:0000738!3.64e-33!140;CL:0000037!7.74e-28!172;CL:0000566!7.74e-28!172;CL:0002087!4.27e-26!119;CL:0000988!5.96e-25!182;CL:0000084!6.82e-25!25;CL:0000827!6.82e-25!25;CL:0000791!1.55e-24!18;CL:0000789!1.55e-24!18;CL:0002420!1.55e-24!18;CL:0002419!1.55e-24!18;CL:0000790!1.55e-24!18;CL:0002032!1.02e-22!165;CL:0000837!1.02e-22!165;CL:0002031!1.06e-21!124;CL:0000838!6.83e-19!52;CL:0000542!2.48e-18!53;CL:0000051!2.48e-18!53;CL:0000625!1.63e-15!11;CL:0000766!1.06e-10!76;CL:0000624!1.89e-09!6;CL:0000763!7.90e-08!112;CL:0000049!7.90e-08!112;CL:0002057!1.08e-07!42;CL:0000094!1.37e-07!8;CL:0002194!2.12e-07!63;CL:0000576!2.12e-07!63;CL:0000040!2.12e-07!63;CL:0000559!2.12e-07!63;CL:0002009!5.75e-07!65;CL:0000860!7.97e-07!45 | ||
|ontology_enrichment_celltype_v019=CL:0000084;9.29e-44;25!CL:0000791;5.63e-42;18!CL:0000789;5.63e-42;18!CL:0002419;5.63e-42;18!CL:0000625;4.56e-26;11!CL:0000624;2.07e-15;6!CL:0000542;9.26e-13;53!CL:0000094;1.62e-12;8!CL:0000081;7.81e-09;11!CL:0000898;1.15e-08;3!CL:0000623;2.52e-08;3!CL:0000226;5.12e-08;3!CL:0000842;5.12e-08;3!CL:0000775;3.68e-07;3!CL:0000767;4.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,9.40e-44,25;CL:0000827,9.40e-44,25;CL:0000791,5.50e-42,18;CL:0000789,5.50e-42,18;CL:0002420,5.50e-42,18;CL:0002419,5.50e-42,18;CL:0000790,5.50e-42,18;CL:0000625,4.56e-26,11;CL:0000838,1.10e-23,52;CL:0000542,4.22e-23,53;CL:0000051,4.22e-23,53;CL:0000738,6.89e-21,136;CL:0000624,2.09e-15,6;CL:0002087,3.77e-15,115;CL:0000037,8.86e-15,168;CL:0000988,1.79e-13,177;CL:0000094,1.75e-12,8;CL:0002032,3.43e-11,161;CL:0000837,3.43e-11,161;CL:0002031,4.53e-11,120;CL:0000081,8.24e-09,11;CL:0000898,1.18e-08,3;CL:0000623,2.55e-08,3;CL:0000825,2.55e-08,3;CL:0000226,5.18e-08,3;CL:0000842,5.18e-08,3;CL:0000775,3.52e-07,3;CL:0000767,4.83e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;5.63e-42;18!CL:0000051;9.26e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.02e-15!102;UBERON:0003061!4.02e-15!102;UBERON:0002193!2.82e-14!112;UBERON:0000178!8.60e-12!15;UBERON:0000179!8.60e-12!15;UBERON:0000463!8.60e-12!15;UBERON:0007023!4.60e-08!115;UBERON:0004177!4.81e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.75e-20;15!UBERON:0000179;1.75e-20;15!UBERON:0000463;1.75e-20;15!UBERON:0002390;2.01e-10;32!UBERON:0002193;6.54e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.73e-20,15;UBERON:0000179,1.73e-20,15;UBERON:0000463,1.73e-20,15;UBERON:0002370,2.00e-10,4;UBERON:0005058,2.00e-10,4;UBERON:0009113,2.00e-10,4;UBERON:0003295,2.00e-10,4;UBERON:0005562,2.00e-10,4;UBERON:0003408,4.70e-08,10;UBERON:0001042,4.70e-08,10;UBERON:0009145,4.70e-08,10;UBERON:0006562,2.97e-07,11;UBERON:0003351,6.35e-07,6 | |||
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| ||
|short_description=p@chr11:118184489..118184513,+ | |short_description=p@chr11:118184489..118184513,+ | ||
}} | }} |
Latest revision as of 18:45, 23 July 2015
Short description: | p@chr11:118184489..118184513, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:118184489..118184513, + |
Coexpression cluster: | C3019_chronic_CD4_CD8_Natural_Hodgkin_thymus_Whole |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 9.40e-44 | 25 |
pro-T cell | 9.40e-44 | 25 |
mature alpha-beta T cell | 5.50e-42 | 18 |
alpha-beta T cell | 5.50e-42 | 18 |
immature T cell | 5.50e-42 | 18 |
mature T cell | 5.50e-42 | 18 |
immature alpha-beta T cell | 5.50e-42 | 18 |
CD8-positive, alpha-beta T cell | 4.56e-26 | 11 |
lymphoid lineage restricted progenitor cell | 1.10e-23 | 52 |
lymphocyte | 4.22e-23 | 53 |
common lymphoid progenitor | 4.22e-23 | 53 |
leukocyte | 6.89e-21 | 136 |
CD4-positive, alpha-beta T cell | 2.09e-15 | 6 |
nongranular leukocyte | 3.77e-15 | 115 |
hematopoietic stem cell | 8.86e-15 | 168 |
hematopoietic cell | 1.79e-13 | 177 |
granulocyte | 1.75e-12 | 8 |
hematopoietic oligopotent progenitor cell | 3.43e-11 | 161 |
hematopoietic multipotent progenitor cell | 3.43e-11 | 161 |
hematopoietic lineage restricted progenitor cell | 4.53e-11 | 120 |
blood cell | 8.24e-09 | 11 |
naive T cell | 1.18e-08 | 3 |
natural killer cell | 2.55e-08 | 3 |
pro-NK cell | 2.55e-08 | 3 |
single nucleate cell | 5.18e-08 | 3 |
mononuclear cell | 5.18e-08 | 3 |
neutrophil | 3.52e-07 | 3 |
basophil | 4.83e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 1.73e-20 | 15 |
haemolymphatic fluid | 1.73e-20 | 15 |
organism substance | 1.73e-20 | 15 |
thymus | 2.00e-10 | 4 |
hemolymphoid system gland | 2.00e-10 | 4 |
thymic region | 2.00e-10 | 4 |
pharyngeal gland | 2.00e-10 | 4 |
thymus primordium | 2.00e-10 | 4 |
gland of gut | 4.70e-08 | 10 |
chordate pharynx | 4.70e-08 | 10 |
pharyngeal region of foregut | 4.70e-08 | 10 |
pharynx | 2.97e-07 | 11 |
pharyngeal epithelium | 6.35e-07 | 6 |