FFCP PHASE1:Mm9::chr19:5560202..5560216,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=727 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:5560202..5560216,+ | |||
|description=CAGE_peak_at_chr19:5560202..5560216,+ | |description=CAGE_peak_at_chr19:5560202..5560216,+ | ||
|id=chr19:5560202..5560216,+ | |id=chr19:5560202..5560216,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.43e-08,6;CL:0000677,3.43e-08,6;CL:0000584,3.43e-08,6;CL:0000075,6.42e-07,7;CL:0002563,7.75e-07,9;CL:0002251,7.75e-07,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!9.20e-18!43;UBERON:0005409!3.55e-17!59;UBERON:0001007!2.30e-09!128;UBERON:0001555!2.30e-09!128;UBERON:0007026!2.30e-09!128;UBERON:0004119!2.46e-09!130;UBERON:0000925!2.46e-09!130;UBERON:0006595!2.46e-09!130;UBERON:0001008!3.06e-09!17;UBERON:0006554!8.64e-09!16;UBERON:0004921!1.09e-08!126;UBERON:0004185!1.09e-08!126;UBERON:0000344!1.39e-08!15;UBERON:0002113!3.05e-08!14;UBERON:0003918!3.05e-08!14;UBERON:0005095!3.05e-08!14;UBERON:0007687!3.05e-08!14;UBERON:0001242!9.93e-08!13;UBERON:0000060!9.93e-08!13;UBERON:0001262!9.93e-08!13;UBERON:0004786!9.93e-08!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.17e-20,31;UBERON:0002113,7.54e-16,14;UBERON:0003918,7.54e-16,14;UBERON:0011143,7.54e-16,14;UBERON:0005095,7.54e-16,14;UBERON:0007687,7.54e-16,14;UBERON:0005409,1.18e-15,47;UBERON:0001008,1.25e-14,19;UBERON:0006554,1.26e-13,18;UBERON:0000344,1.16e-09,15;UBERON:0000489,1.60e-09,21;UBERON:0001242,1.89e-09,13;UBERON:0001262,1.89e-09,13;UBERON:0004786,1.89e-09,13;UBERON:0003350,7.75e-07,9;UBERON:0004808,7.75e-07,9;UBERON:0001277,7.75e-07,9 | |||
|phase1_expression=0,4.88565570695105,5.0049916332849,6.95667686005709,7.01254021924886,0.671517087647559,2.80335168714631,0,0,0,0,0,0,0.0874204024189974,0.333109761815663,0.607425802169478,2.09868563438444,0.157731082679119,0,0,0.510259740906419,0.0992909512008853,0.261199789138935,1.59992422793407,0.91763712426868,2.8711598205751,2.15380998079537,2.15471232685889,1.14014051673824,1.76421090831952,0.665191531965914,0,0,0,0.288851619751275,0.664938581433969,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,0,0,0.122490799214954,0,0,0,0,0,0,0,0,0,0,0,0,0.284743361598206,0.186399445825301,0,0,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0.68510327831436,0,0,0.173485326766136,0,0.230615497256059,0,0,0.125666591329675,0.988779870937496,0,0.884610551949874,0,0,0,1.86391761218122,0,0,2.81002760729451,0,0,0.127070227073065,0,0,0,0,0,0,0,0.203678727700633,0.124406970610093,1.26361379216837,2.10441855886474,0.260240885925407,0.459804208866946,0.180062129805349,0.150704817835715,0.0680364991513279,0,0.187403449119458,0.258703370739016,0.215567992932842,0.378212160335639,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0.268273401399619,0.116765342367169,0,0,0.0810688095458557,0,0,0,0,0.205809224758569,12.2254949704005,4.23120906661671,0.213288250535234,0,0.515469845288373,1.21010114774006,1.33426826306922,1.90225626112559,2.37264530772256,1.31759163779209,1.50801125280162,0.994782360205754,0.974820435595601,4.49409704327111,1.51296634912286,1.99141273254367,3.22435431620239,3.65595240351132,2.25415471346161,3.25842124552503,3.68509725618489,2.73529697572242,1.96033265085198,3.69025369949005,2.511979645462,2.83813477020141,0,0,0,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0.234690248288502,0.502518772325447,0.238043640886014,0.195133647857799,0.157635144106191,0.221464689648775,0,0.327726629431476,0,0,0,0,0.983528546038072,1.37968373152366,0,0.117211686592203,0,0,0.315508219416257,0.390438744296638,0.215423397732799,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,1.31976098378028,0,0.242780636154981,0.906970670894253,1.32023555829129,1.18120757152309,3.3817866273832,0.258428293168221,0.363533729477506,0.712994756769443,1.8962205476149,1.05418608574999,1.03135543248187,0,0,0,0.214337035031592,0.354680467284547,0,0,0.304464949114599,0.704015124191131,0,1.7642271844397,0.8244312647074,0.322928853391811,0.603129249281559,0.954978752025092,1.31312719796049,2.62332752966866,0,0,0,0.185194527369712,0,0,0,0,0.139951452323658,0,2.86401185404534,0.158167996790568,0.813277868507395,0.756037385752609,1.04544148007234,0.436725127492355,0.809186078308924,0.909188012978695,2.09404753587224,0.777689839750757,1.86401793926078,1.69107881605257,0,0,0,0.129159823477731,0.168956125490778,0,0.651021924219751,0.943734099831398,0.483168241652012,1.72818003754719,0,2.63542779877213,0.513554785824136,0.77952493786677,0.537080087002444,0.79472541912506,0.240390899039938,0.590758108698309,0.706765149637033,0.228620419965,0.201652370273681,0.38983152295901,0.577271049841977,0,0.453460767230423,0.665957860122194,0.179427713218951,0.167884616364078,0.386379188064381,0.563047426353546,0.36630324853453,1.2862102744744,2.50786052017682,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0,0.44449345560323,0,0,0.505394423527595,0.760437899670719,0.188626341386076,0.37456602987953,0.256100609619477,0.114870937911227,0,0.115884325944855,0.38581844092741,0.412085900803307,0.588795680537589,0.342869252385415,0.354951612318675,0.238436189947321,0.436039249896986,0.0941093804153306,0.25384382367503,0.548783918618318,0.526139422875686,0.407412341537585,0,0.237270036248348,0.591026894253381,0.409231043169689,0.464810523557898,0.192906610981141,0.249810577937946,0.467863216890817,0.644613162144895,0.191288332068843,0.441182838239031,0 | |phase1_expression=0,4.88565570695105,5.0049916332849,6.95667686005709,7.01254021924886,0.671517087647559,2.80335168714631,0,0,0,0,0,0,0.0874204024189974,0.333109761815663,0.607425802169478,2.09868563438444,0.157731082679119,0,0,0.510259740906419,0.0992909512008853,0.261199789138935,1.59992422793407,0.91763712426868,2.8711598205751,2.15380998079537,2.15471232685889,1.14014051673824,1.76421090831952,0.665191531965914,0,0,0,0.288851619751275,0.664938581433969,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210324961351382,0,0,0.122490799214954,0,0,0,0,0,0,0,0,0,0,0,0,0.284743361598206,0.186399445825301,0,0,0.289864488701678,0,0,0,0,0,0.280888840263504,0,0,0,0.281686839553361,0,0,0,0.649473123033642,0.506719730950197,0.505524445014783,0.68510327831436,0,0,0.173485326766136,0,0.230615497256059,0,0,0.125666591329675,0.988779870937496,0,0.884610551949874,0,0,0,1.86391761218122,0,0,2.81002760729451,0,0,0.127070227073065,0,0,0,0,0,0,0,0.203678727700633,0.124406970610093,1.26361379216837,2.10441855886474,0.260240885925407,0.459804208866946,0.180062129805349,0.150704817835715,0.0680364991513279,0,0.187403449119458,0.258703370739016,0.215567992932842,0.378212160335639,0,0,0,0,0,0,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0.268273401399619,0.116765342367169,0,0,0.0810688095458557,0,0,0,0,0.205809224758569,12.2254949704005,4.23120906661671,0.213288250535234,0,0.515469845288373,1.21010114774006,1.33426826306922,1.90225626112559,2.37264530772256,1.31759163779209,1.50801125280162,0.994782360205754,0.974820435595601,4.49409704327111,1.51296634912286,1.99141273254367,3.22435431620239,3.65595240351132,2.25415471346161,3.25842124552503,3.68509725618489,2.73529697572242,1.96033265085198,3.69025369949005,2.511979645462,2.83813477020141,0,0,0,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0,0.162964976442026,0,0.234690248288502,0.502518772325447,0.238043640886014,0.195133647857799,0.157635144106191,0.221464689648775,0,0.327726629431476,0,0,0,0,0.983528546038072,1.37968373152366,0,0.117211686592203,0,0,0.315508219416257,0.390438744296638,0.215423397732799,0,0,0,0.404810701674894,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,1.31976098378028,0,0.242780636154981,0.906970670894253,1.32023555829129,1.18120757152309,3.3817866273832,0.258428293168221,0.363533729477506,0.712994756769443,1.8962205476149,1.05418608574999,1.03135543248187,0,0,0,0.214337035031592,0.354680467284547,0,0,0.304464949114599,0.704015124191131,0,1.7642271844397,0.8244312647074,0.322928853391811,0.603129249281559,0.954978752025092,1.31312719796049,2.62332752966866,0,0,0,0.185194527369712,0,0,0,0,0.139951452323658,0,2.86401185404534,0.158167996790568,0.813277868507395,0.756037385752609,1.04544148007234,0.436725127492355,0.809186078308924,0.909188012978695,2.09404753587224,0.777689839750757,1.86401793926078,1.69107881605257,0,0,0,0.129159823477731,0.168956125490778,0,0.651021924219751,0.943734099831398,0.483168241652012,1.72818003754719,0,2.63542779877213,0.513554785824136,0.77952493786677,0.537080087002444,0.79472541912506,0.240390899039938,0.590758108698309,0.706765149637033,0.228620419965,0.201652370273681,0.38983152295901,0.577271049841977,0,0.453460767230423,0.665957860122194,0.179427713218951,0.167884616364078,0.386379188064381,0.563047426353546,0.36630324853453,1.2862102744744,2.50786052017682,0,0,0,0,0,0,0,0,0,0,0.103787347584177,0,0.170733605754134,0,0,0,0.44449345560323,0,0,0.505394423527595,0.760437899670719,0.188626341386076,0.37456602987953,0.256100609619477,0.114870937911227,0,0.115884325944855,0.38581844092741,0.412085900803307,0.588795680537589,0.342869252385415,0.354951612318675,0.238436189947321,0.436039249896986,0.0941093804153306,0.25384382367503,0.548783918618318,0.526139422875686,0.407412341537585,0,0.237270036248348,0.591026894253381,0.409231043169689,0.464810523557898,0.192906610981141,0.249810577937946,0.467863216890817,0.644613162144895,0.191288332068843,0.441182838239031,0 | ||
|short_description=p@chr19:5560202..5560216,+ | |short_description=p@chr19:5560202..5560216,+ | ||
}} | }} |
Latest revision as of 08:46, 4 August 2015
Short description: | p@chr19:5560202..5560216, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:5560202..5560216, + |
Coexpression cluster: | MCL_coexpression_mm9:727 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.43e-08 | 6 |
gut absorptive cell | 3.43e-08 | 6 |
enterocyte | 3.43e-08 | 6 |
columnar/cuboidal epithelial cell | 6.42e-07 | 7 |
intestinal epithelial cell | 7.75e-07 | 9 |
epithelial cell of alimentary canal | 7.75e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.17e-20 | 31 |
kidney | 7.54e-16 | 14 |
kidney mesenchyme | 7.54e-16 | 14 |
upper urinary tract | 7.54e-16 | 14 |
kidney rudiment | 7.54e-16 | 14 |
kidney field | 7.54e-16 | 14 |
gastrointestinal system | 1.18e-15 | 47 |
renal system | 1.25e-14 | 19 |
urinary system structure | 1.26e-13 | 18 |
mucosa | 1.16e-09 | 15 |
cavitated compound organ | 1.60e-09 | 21 |
intestinal mucosa | 1.89e-09 | 13 |
wall of intestine | 1.89e-09 | 13 |
gastrointestinal system mucosa | 1.89e-09 | 13 |
epithelium of mucosa | 7.75e-07 | 9 |
gastrointestinal system epithelium | 7.75e-07 | 9 |
intestinal epithelium | 7.75e-07 | 9 |