CL:0000990: Difference between revisions
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|id=CL:0000990 | |id=CL:0000990 | ||
|name=conventional dendritic cell | |name=conventional dendritic cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="Conventional dendritic cell is a dendritic cell that is CD11c-high." [GO_REF:0000031, GOC:amm, PMID:17850486] | |def="Conventional dendritic cell is a dendritic cell that is CD11c-high." [GO_REF:0000031, GOC:amm, PMID:17850486] | ||
|xref=FMA:84191 | |xref=FMA:84191 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:26, 26 June 2012
| Name: | conventional dendritic cell | ||
|---|---|---|---|
| Namespace: | cell;;efo | ||
| Definition: | "Conventional dendritic cell is a dendritic cell that is CD11c-high." [GO_REF:0000031, GOC:amm, PMID:17850486] | ||
| Xrefs: |
| ||
| Synonyms: |
"cDC" EXACT [] "DC1" EXACT [] "dendritic reticular cell" EXACT [] "interdigitating cell" BROAD [] "type 1 DC" EXACT [] "veiled cell" BROAD [] | ||
| Comments: | Originally described in the dendritic cell ontology (DC_CL: 0000003)(PMID: 19243617) These cells are also CD20-negative, MHCII-positive. |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000451(dendritic cell) |
|---|
Children
| is a: | CL:0000453 (Langerhans cell),CL:0000840 (immature conventional dendritic cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
- 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
- 11901-125F2 (migratory langerhans cells, donor1)
- 11902-125F3 (migratory langerhans cells, donor2)
- 11903-125F4 (migratory langerhans cells, donor3)
- 11904-125F5 (immature langerhans cells, donor1)
... further results Mouse (Mus musculus)
- 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
- 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
- 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
- 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
- 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
- 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
- 11901-125F2 (migratory langerhans cells, donor1)
- 11902-125F3 (migratory langerhans cells, donor2)
- 11903-125F4 (migratory langerhans cells, donor3)
- 11904-125F5 (immature langerhans cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000990 (conventional dendritic cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.96e-174 | FFCP PHASE1:Hg19::chr15:101535004..101535045,+#_1ec5ca570a35492eb6cdf2322d4a86a3 | p@chr15:101535004..101535045, + |
| 9.96e-174 | FFCP PHASE2:Hg19::chr15:101535004..101535045,+#_1ec5ca570a35492eb6cdf2322d4a86a3 | p@chr15:101535004..101535045, + |
| 3.95e-152 | FFCP PHASE1:Hg19::chr16:57398251..57398254,+#_e123fca2244f1fe4dcf6882733320750 | p@chr16:57398251..57398254, + |
| 3.95e-152 | FFCP PHASE1:Hg19::chr15:101534994..101535003,+#_e123fca2244f1fe4dcf6882733320750 | p@chr15:101534994..101535003, + |
| 3.95e-152 | FFCP PHASE2:Hg19::chr15:101534994..101535003,+#_e123fca2244f1fe4dcf6882733320750 | p@chr15:101534994..101535003, + |
| 3.95e-152 | FFCP PHASE2:Hg19::chr16:57398251..57398254,+#_e123fca2244f1fe4dcf6882733320750 | p@chr16:57398251..57398254, + |
| 1.9e-139 | FFCP PHASE1:Hg19::chr13:75884283..75884317,-#_15103c23248e87474d89e8b81ac2a6ea | p@chr13:75884283..75884317, - |
| 1.9e-139 | FFCP PHASE2:Hg19::chr13:75884283..75884317,-#_15103c23248e87474d89e8b81ac2a6ea | p@chr13:75884283..75884317, - |
| 1.82e-133 | FFCP PHASE2:Hg19::chr16:10960104..10960115,+#_85cbdbc3b5a525b0da9259a6f318f606 | p4@AB463580 |
| 1.82e-133 | FFCP PHASE1:Hg19::chr15:101529373..101529387,+#_85cbdbc3b5a525b0da9259a6f318f606 | p@chr15:101529373..101529387, + |
| 1.82e-133 | FFCP PHASE2:Hg19::chr15:101529373..101529387,+#_85cbdbc3b5a525b0da9259a6f318f606 | p@chr15:101529373..101529387, + |
| 1.82e-133 | FFCP PHASE1:Hg19::chr16:10960104..10960115,+#_85cbdbc3b5a525b0da9259a6f318f606 | p4@AB463580 |
| 1.42e-130 | FFCP PHASE2:Hg19::chr3:119198717..119198735,+#_68339fa729e72aea9bd64b29de987e3d | p@chr3:119198717..119198735, + |
| 1.42e-130 | FFCP PHASE1:Hg19::chr3:119198717..119198735,+#_68339fa729e72aea9bd64b29de987e3d | p@chr3:119198717..119198735, + |
| 1.42e-130 | FFCP PHASE2:Hg19::chr2:61080954..61080964,+#_68339fa729e72aea9bd64b29de987e3d | p@chr2:61080954..61080964, + |
| 1.42e-130 | FFCP PHASE1:Hg19::chr18:59991691..59991708,+#_68339fa729e72aea9bd64b29de987e3d | p@chr18:59991691..59991708, + |
| 1.42e-130 | FFCP PHASE1:Hg19::chr2:61080954..61080964,+#_68339fa729e72aea9bd64b29de987e3d | p@chr2:61080954..61080964, + |
| 1.42e-130 | FFCP PHASE2:Hg19::chr18:59991691..59991708,+#_68339fa729e72aea9bd64b29de987e3d | p@chr18:59991691..59991708, + |
| 3.16e-127 | FFCP PHASE1:Hg19::chr16:10960091..10960099,+#_4a83ff0e022691943dea7d07fd2a6f49 | p3@AB463580 |
| 3.16e-127 | FFCP PHASE2:Hg19::chr16:10960091..10960099,+#_4a83ff0e022691943dea7d07fd2a6f49 | p3@AB463580 |
| 8.55e-119 | FFCP PHASE1:Hg19::chr12:112513512..112513567,-#_fa2d33d370f7adc04cbba2f873c97cd0 | p@chr12:112513512..112513567, - |
| 8.55e-119 | FFCP PHASE2:Hg19::chr12:112513512..112513567,-#_fa2d33d370f7adc04cbba2f873c97cd0 | p@chr12:112513512..112513567, - |
| 8.55e-119 | FFCP PHASE1:Hg19::chr16:57398441..57398460,+#_fa2d33d370f7adc04cbba2f873c97cd0 | p@chr16:57398441..57398460, + |
| 8.55e-119 | FFCP PHASE2:Hg19::chr16:57398441..57398460,+#_fa2d33d370f7adc04cbba2f873c97cd0 | p@chr16:57398441..57398460, + |
| 1.19e-116 | FFCP PHASE1:Hg19::chr13:75884320..75884362,-#_36a9804301a132c99964e91c825ab26a | p@chr13:75884320..75884362, - |
| 1.19e-116 | FFCP PHASE2:Hg19::chr13:75884320..75884362,-#_36a9804301a132c99964e91c825ab26a | p@chr13:75884320..75884362, - |
| 3.66e-112 | FFCP PHASE1:Hg19::chr16:57398263..57398266,+#_df8396f901a98c61a096e7333be276b4 | p@chr16:57398263..57398266, + |
| 3.66e-112 | FFCP PHASE2:Hg19::chr16:57398263..57398266,+#_df8396f901a98c61a096e7333be276b4 | p@chr16:57398263..57398266, + |
| 4.43e-112 | FFCP PHASE1:Hg19::chr16:57398271..57398274,+#_e447576d9d84e89de1a0f32c5f9951f6 | p@chr16:57398271..57398274, + |
| 4.43e-112 | FFCP PHASE2:Hg19::chr16:57398271..57398274,+#_e447576d9d84e89de1a0f32c5f9951f6 | p@chr16:57398271..57398274, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr6:32729529..32729536,-#_fb55be8ce958b459609dde489b645a52 | p3@M95729 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr16:10959868..10959879,+#_fb55be8ce958b459609dde489b645a52 | p2@AB463580 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr3:119188705..119188718,+#_fb55be8ce958b459609dde489b645a52 | p@chr3:119188705..119188718, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr16:10959868..10959879,+#_fb55be8ce958b459609dde489b645a52 | p2@AB463580 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr16:10885979..10885991,+#_fb55be8ce958b459609dde489b645a52 | p@chr16:10885979..10885991, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr16:10885979..10885991,+#_fb55be8ce958b459609dde489b645a52 | p@chr16:10885979..10885991, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr8:120974832..120974840,+#_fb55be8ce958b459609dde489b645a52 | p@chr8:120974832..120974840, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr6:32729529..32729536,-#_fb55be8ce958b459609dde489b645a52 | p3@M95729 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr16:10959880..10959887,+#_fb55be8ce958b459609dde489b645a52 | p6@AB463580 |
| 4.6e-109 | FFCP PHASE2:Hg19::chr16:10959880..10959887,+#_fb55be8ce958b459609dde489b645a52 | p6@AB463580 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr8:120974832..120974840,+#_fb55be8ce958b459609dde489b645a52 | p@chr8:120974832..120974840, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr1:201376546..201376550,+#_fb55be8ce958b459609dde489b645a52 | p@chr1:201376546..201376550, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr3:52813932..52813943,+#_fb55be8ce958b459609dde489b645a52 | p11@ITIH1 |
| 4.6e-109 | FFCP PHASE2:Hg19::chr6:32726761..32726781,-#_fb55be8ce958b459609dde489b645a52 | p@chr6:32726761..32726781, - |
| 4.6e-109 | FFCP PHASE1:Hg19::chr13:75884392..75884395,-#_fb55be8ce958b459609dde489b645a52 | p@chr13:75884392..75884395, - |
| 4.6e-109 | FFCP PHASE2:Hg19::chr19:45487650..45487661,+#_fb55be8ce958b459609dde489b645a52 | p@chr19:45487650..45487661, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr1:201376546..201376550,+#_fb55be8ce958b459609dde489b645a52 | p@chr1:201376546..201376550, + |
| 4.6e-109 | FFCP PHASE2:Hg19::chr13:75884392..75884395,-#_fb55be8ce958b459609dde489b645a52 | p@chr13:75884392..75884395, - |
| 4.6e-109 | FFCP PHASE1:Hg19::chr3:52813932..52813943,+#_fb55be8ce958b459609dde489b645a52 | p11@ITIH1 |
| 4.6e-109 | FFCP PHASE1:Hg19::chr6:32726761..32726781,-#_fb55be8ce958b459609dde489b645a52 | p@chr6:32726761..32726781, - |
| 4.6e-109 | FFCP PHASE1:Hg19::chr19:45487650..45487661,+#_fb55be8ce958b459609dde489b645a52 | p@chr19:45487650..45487661, + |
| 4.6e-109 | FFCP PHASE1:Hg19::chr16:10959804..10959811,+#_fb55be8ce958b459609dde489b645a52 | p5@AB463580 |
| 4.6e-109 | FFCP PHASE2:Hg19::chr16:10959804..10959811,+#_fb55be8ce958b459609dde489b645a52 | p5@AB463580 |
| 4.6e-109 | FFCP PHASE2:Hg19::chr3:119188705..119188718,+#_fb55be8ce958b459609dde489b645a52 | p@chr3:119188705..119188718, + |
| 4.63e-108 | FFCP PHASE1:Hg19::chr16:57397882..57397931,-#_deaa52a840ab0488621f4487c79b07f3 | p1@CU693343 |
| 4.63e-108 | FFCP PHASE2:Hg19::chr16:57397882..57397931,-#_deaa52a840ab0488621f4487c79b07f3 | p1@CU693343 |
| 5.32e-108 | FFCP PHASE1:Hg19::chr16:57397593..57397602,+#_5765d0e25382654070edaaf3d71fd5d5 | p@chr16:57397593..57397602, + |
| 5.32e-108 | FFCP PHASE2:Hg19::chr16:57397593..57397602,+#_5765d0e25382654070edaaf3d71fd5d5 | p@chr16:57397593..57397602, + |
| 8.06e-108 | FFCP PHASE1:Hg19::chr16:57399022..57399038,+#_288c76ded6fffcb90068d95f631ef504 | p@chr16:57399022..57399038, + |
| 8.06e-108 | FFCP PHASE2:Hg19::chr16:57399022..57399038,+#_288c76ded6fffcb90068d95f631ef504 | p@chr16:57399022..57399038, + |
| 2.5e-107 | FFCP PHASE1:Hg19::chr16:57394436..57394449,+#_08bdc8533db89a66db1910012672fda4 | p@chr16:57394436..57394449, + |
| 2.5e-107 | FFCP PHASE2:Hg19::chr16:57394436..57394449,+#_08bdc8533db89a66db1910012672fda4 | p@chr16:57394436..57394449, + |
| 3.43e-107 | FFCP PHASE1:Hg19::chr16:57399043..57399070,+#_17a996806499e6b77e3b5da90b04696a | p@chr16:57399043..57399070, + |
| 3.43e-107 | FFCP PHASE2:Hg19::chr16:57399043..57399070,+#_17a996806499e6b77e3b5da90b04696a | p@chr16:57399043..57399070, + |
| 4.01e-107 | FFCP PHASE1:Hg19::chr16:57397927..57397934,+#_f2230b514217bbb6da2bcd16b4c46fcc | p@chr16:57397927..57397934, + |
| 4.01e-107 | FFCP PHASE2:Hg19::chr16:57397927..57397934,+#_f2230b514217bbb6da2bcd16b4c46fcc | p@chr16:57397927..57397934, + |
| 1.07e-100 | FFCP PHASE2:Hg19::chr16:57397735..57397758,-#_ddedf8fb13b0dced5a0cd05870d225de | p3@CU693343 |
| 1.07e-100 | FFCP PHASE1:Hg19::chr16:57398987..57399006,+#_ddedf8fb13b0dced5a0cd05870d225de | p@chr16:57398987..57399006, + |
| 1.07e-100 | FFCP PHASE2:Hg19::chr16:57398987..57399006,+#_ddedf8fb13b0dced5a0cd05870d225de | p@chr16:57398987..57399006, + |
| 1.07e-100 | FFCP PHASE1:Hg19::chr16:57397735..57397758,-#_ddedf8fb13b0dced5a0cd05870d225de | p3@CU693343 |
| 2.05e-99 | FFCP PHASE1:Hg19::chr6:341221..341236,-#_a50bda5d69e5a966bcaf02f73e8c661a | p@chr6:341221..341236, - |
| 2.05e-99 | FFCP PHASE2:Hg19::chr6:341221..341236,-#_a50bda5d69e5a966bcaf02f73e8c661a | p@chr6:341221..341236, - |
| 5.3e-94 | FFCP PHASE1:Hg19::chr16:57397561..57397572,+#_351ab349f116915f027d44936a03563d | p@chr16:57397561..57397572, + |
| 5.3e-94 | FFCP PHASE2:Hg19::chr16:57397561..57397572,+#_351ab349f116915f027d44936a03563d | p@chr16:57397561..57397572, + |
| 3.38e-91 | FFCP PHASE2:Hg19::chr1:159272441..159272452,+#_c97711d788e437703d252840386b669c | p5@FCER1A |
| 3.38e-91 | FFCP PHASE1:Hg19::chr13:75884255..75884262,-#_c97711d788e437703d252840386b669c | p@chr13:75884255..75884262, - |
| 3.38e-91 | FFCP PHASE1:Hg19::chr1:159272441..159272452,+#_c97711d788e437703d252840386b669c | p5@FCER1A |
| 3.38e-91 | FFCP PHASE2:Hg19::chr13:75884255..75884262,-#_c97711d788e437703d252840386b669c | p@chr13:75884255..75884262, - |
| 3.38e-91 | FFCP PHASE2:Hg19::chr2:173867941..173867955,+#_c97711d788e437703d252840386b669c | p@chr2:173867941..173867955, + |
| 3.38e-91 | FFCP PHASE1:Hg19::chr2:173867941..173867955,+#_c97711d788e437703d252840386b669c | p@chr2:173867941..173867955, + |
| 4.08e-91 | FFCP PHASE2:Hg19::chr1:159272420..159272431,+#_4931bad15025c2d942da1f334949e94d | p3@FCER1A |
| 4.08e-91 | FFCP PHASE1:Hg19::chr1:159272420..159272431,+#_4931bad15025c2d942da1f334949e94d | p3@FCER1A |
| 1.95e-88 | FFCP PHASE1:Hg19::chr16:57394384..57394402,+#_03bbe7b7c12b108f68ab5862178e8099 | p@chr16:57394384..57394402, + |
| 1.95e-88 | FFCP PHASE2:Hg19::chr16:57394384..57394402,+#_03bbe7b7c12b108f68ab5862178e8099 | p@chr16:57394384..57394402, + |
| 2.18e-88 | FFCP PHASE2:Hg19::chr16:57397581..57397590,+#_771db516e21cdad11eaef5a99091b482 | p@chr16:57397581..57397590, + |
| 2.18e-88 | FFCP PHASE1:Hg19::chr16:57397581..57397590,+#_771db516e21cdad11eaef5a99091b482 | p@chr16:57397581..57397590, + |
| 1.15e-87 | FFCP PHASE2:Hg19::chr1:157108764..157108776,-#_41301066f1da97992e82e42d97faec1d | p7@ETV3 |
| 1.15e-87 | FFCP PHASE1:Hg19::chr1:157108764..157108776,-#_41301066f1da97992e82e42d97faec1d | p7@ETV3 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr6:32729494..32729506,-#_45bad81c2d27cef080fad815b8dcf782 | p1@M95729 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr2:71056842..71056868,+#_45bad81c2d27cef080fad815b8dcf782 | p@chr2:71056842..71056868, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr3:52813997..52814015,+#_45bad81c2d27cef080fad815b8dcf782 | p9@ITIH1 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr2:61081135..61081167,+#_45bad81c2d27cef080fad815b8dcf782 | p@chr2:61081135..61081167, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr16:57399642..57399651,+#_45bad81c2d27cef080fad815b8dcf782 | p@chr16:57399642..57399651, + |
| 1.37e-87 | FFCP PHASE2:Hg19::chr12:112590221..112590232,+#_45bad81c2d27cef080fad815b8dcf782 | p@chr12:112590221..112590232, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr18:22537624..22537627,-#_45bad81c2d27cef080fad815b8dcf782 | p@chr18:22537624..22537627, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr10:112109413..112109419,-#_45bad81c2d27cef080fad815b8dcf782 | p@chr10:112109413..112109419, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr2:71056842..71056868,+#_45bad81c2d27cef080fad815b8dcf782 | p@chr2:71056842..71056868, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr3:52813997..52814015,+#_45bad81c2d27cef080fad815b8dcf782 | p9@ITIH1 |
| 1.37e-87 | FFCP PHASE1:Hg19::chr2:61081135..61081167,+#_45bad81c2d27cef080fad815b8dcf782 | p@chr2:61081135..61081167, + |
| 1.37e-87 | FFCP PHASE1:Hg19::chr12:112513578..112513587,-#_45bad81c2d27cef080fad815b8dcf782 | p@chr12:112513578..112513587, - |
