Personal tools

UBERON:0010230: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0010230
|alt_id=
|name=eyeball of camera-type eye
|namespace=
|def="The camera-type eye apart from its appendages/adnexa." [Wikipedia:Globe_(human_eye)]
|xref=FMA:12513;;MIAA:0000283;;SCTID:244486005
|is_a=UBERON:0000020;;UBERON:0004121
|synonym="bulbus oculi" EXACT [];;"eye" RELATED INCONSISTENT [];;"eyeball" EXACT [FMA:12513];;"globe" RELATED [HP:0100886, MIAA:0000283]
|comment=See notes for camera-type eye
|comment=See notes for camera-type eye
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The camera-type eye apart from its appendages/adnexa." [Wikipedia:Globe_(human_eye)]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010230
|is_a=UBERON:0000020 ;;UBERON:0004121
|is_obsolete=
|located_in=
|located_in=
|name=eyeball of camera-type eye
|namespace=
|obo_creation_date=
|part_of=UBERON:0000019
|part_of=UBERON:0000019
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bulbus oculi" EXACT [];;"eye" RELATED INCONSISTENT [];;"eyeball" EXACT [FMA:12513];;"globe" RELATED [HP:0100886, MIAA:0000283]
|union_of=
|xref=FMA:12513;;MIAA:0000283;;SCTID:244486005
}}
}}

Revision as of 11:49, 12 September 2014

Name:eyeball of camera-type eye
Definition:"The camera-type eye apart from its appendages/adnexa." [Wikipedia:Globe_(human_eye)]
Xrefs:
links:

FMA:12513
MIAA:0000283

SCTID:244486005
Synonyms: "bulbus oculi" EXACT []
"eye" RELATED INCONSISTENT []
"eyeball" EXACT [FMA:12513]
"globe" RELATED [HP:0100886, MIAA:0000283]
Comments:See notes for camera-type eye

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0000019(camera-type eye)



Children

derives from:FF:0011252 (mouse eyeball- neonate N01 sample),FF:0011264 (mouse eyeball- neonate N00 sample),FF:0011281 (mouse eyeball- neonate N02 sample),FF:0011309 (mouse eyeball- adult sample),FF:0011316 (mouse eyeball- embryo E12 sample),FF:0011335 (mouse eyeball- embryo E14 sample),FF:0011344 (mouse eyeball- embryo E15 sample),FF:0011423 (mouse eyeball- neonate N16 sample),FF:0011521 (mouse eyeball- embryo E17 sample)
part of:UBERON:0001801 (anterior segment of eyeball),UBERON:0001802 (posterior segment of eyeball),UBERON:0012430 (tunica fibrosa of eyeball)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010230 (eyeball of camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.96e-70FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_9ddbfc1e6995fa808800012abd51d2e4p10@SIX3
7.96e-70FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_9ddbfc1e6995fa808800012abd51d2e4p10@SIX3
7.68e-69FFCP PHASE1:Hg19::chr8:53853672..53853682,-#_7b7ec63e6e554a2c56b3090cfea57658p1@BC033145
7.68e-69FFCP PHASE2:Hg19::chr8:53853672..53853682,-#_7b7ec63e6e554a2c56b3090cfea57658p1@BC033145
3.68e-57FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_014581427ef74fe0ed45cb40c9e02fe6p@chr14:87636652..87636657, -
3.68e-57FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_014581427ef74fe0ed45cb40c9e02fe6p@chr14:87636652..87636657, -
7.11e-57FFCP PHASE1:Hg19::chr2:45168617..45168631,-#_b30e595a1aaaafc729c036c36a009fa3p1@ENST00000456467
7.11e-57FFCP PHASE2:Hg19::chr2:45168617..45168631,-#_b30e595a1aaaafc729c036c36a009fa3p1@ENST00000456467
1.55e-56FFCP PHASE1:Hg19::chr1:26498321..26498327,-#_7b348f28d7f02318d53981e2e6975d6bp1@ENST00000448923
1.55e-56FFCP PHASE2:Hg19::chr1:26498321..26498327,-#_7b348f28d7f02318d53981e2e6975d6bp1@ENST00000448923
1.88e-56FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_290aaba5d088c86ec53445bcdb71e047p11@SIX3
1.88e-56FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_290aaba5d088c86ec53445bcdb71e047p11@SIX3
1.02e-52FFCP PHASE1:Hg19::chr2:45162900..45162914,-#_356b69d7c68127b60ea38d5fa14dab58p1@ENST00000432125
1.02e-52FFCP PHASE2:Hg19::chr2:45162900..45162914,-#_356b69d7c68127b60ea38d5fa14dab58p1@ENST00000432125
2.0e-52FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_d1b9af330c5c2766a08151282cc8cc55p7@PTPRU
2.0e-52FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_d1b9af330c5c2766a08151282cc8cc55p7@PTPRU
1.16e-49FFCP PHASE1:Hg19::chr7:115723925..115723935,-#_de03571e2604820936e0d21f719600f3p@chr7:115723925..115723935, -
1.16e-49FFCP PHASE2:Hg19::chr7:115723925..115723935,-#_de03571e2604820936e0d21f719600f3p@chr7:115723925..115723935, -
4.83e-49FFCP PHASE1:Hg19::chr2:45169179..45169190,+#_0a4b829317c16aa144d1bec36266c211p8@SIX3
4.83e-49FFCP PHASE2:Hg19::chr2:45169179..45169190,+#_0a4b829317c16aa144d1bec36266c211p8@SIX3
6.21e-49FFCP PHASE1:Hg19::chr18:56940663..56940691,-#_13ce65970e4ebdb7903508eac7bd9c2dp2@RAX
6.21e-49FFCP PHASE2:Hg19::chr18:56940663..56940691,-#_13ce65970e4ebdb7903508eac7bd9c2dp2@RAX
2.35e-48FFCP PHASE2:Hg19::chr2:45165994..45166012,-#_44b7b33ca305c097b4ee8a55f6bcea85p1@ENST00000444871
2.35e-48FFCP PHASE1:Hg19::chr2:45165994..45166012,-#_44b7b33ca305c097b4ee8a55f6bcea85p1@ENST00000444871
3.15e-48FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_6dee04c66f5d55e824ccfa2c60e08051p3@SIX6
3.15e-48FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_6dee04c66f5d55e824ccfa2c60e08051p3@SIX6
6.51e-47FFCP PHASE1:Hg19::chr2:45168856..45168867,+#_37a0024d7fee20b12d66e1e5fa694290p7@SIX3
6.51e-47FFCP PHASE2:Hg19::chr2:45168856..45168867,+#_37a0024d7fee20b12d66e1e5fa694290p7@SIX3
4.73e-46FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_313247baac7d9c2805710daa4a00204bp2@SIX6
4.73e-46FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_313247baac7d9c2805710daa4a00204bp2@SIX6
4.7e-45FFCP PHASE1:Hg19::chr2:45166504..45166533,-#_f1c04c2619b4e74ce9ee357502871628p2@ENST00000437916
4.7e-45FFCP PHASE2:Hg19::chr2:45166504..45166533,-#_f1c04c2619b4e74ce9ee357502871628p2@ENST00000437916
8.95e-44FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_201278da04654fe93f0a4f703fc8d1a0p11@PAX6
8.95e-44FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_201278da04654fe93f0a4f703fc8d1a0p11@PAX6
4.79e-42FFCP PHASE1:Hg19::chr8:99076582..99076599,+#_6c854e2e5ac0dcc7c95f15b40b45dd3bp6@C8orf47
4.79e-42FFCP PHASE2:Hg19::chr8:99076582..99076599,+#_6c854e2e5ac0dcc7c95f15b40b45dd3bp6@C8orf47
1.93e-41FFCP PHASE1:Hg19::chr9:73483992..73484003,-#_b99abc381b121ef641b507f4bd301279p6@TRPM3
1.93e-41FFCP PHASE2:Hg19::chr9:73483992..73484003,-#_b99abc381b121ef641b507f4bd301279p6@TRPM3
2.19e-41FFCP PHASE2:Hg19::chr14:60975883..60975911,+#_dcb0e2fd97c93c03afb9b178a913b7f5p1@SIX6
2.19e-41FFCP PHASE1:Hg19::chr14:60975883..60975911,+#_dcb0e2fd97c93c03afb9b178a913b7f5p1@SIX6
4.28e-40FFCP PHASE2:Hg19::chr7:115723897..115723915,-#_d3b5609c236b2a7388a18f54b52f557fp@chr7:115723897..115723915, -
4.28e-40FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_d3b5609c236b2a7388a18f54b52f557fp@chr13:99135322..99135327, -
4.28e-40FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_d3b5609c236b2a7388a18f54b52f557fp2@SERPINE3
4.28e-40FFCP PHASE1:Hg19::chr12:97856211..97856221,+#_d3b5609c236b2a7388a18f54b52f557fp@chr12:97856211..97856221, +
4.28e-40FFCP PHASE2:Hg19::chr12:97856211..97856221,+#_d3b5609c236b2a7388a18f54b52f557fp@chr12:97856211..97856221, +
4.28e-40FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_d3b5609c236b2a7388a18f54b52f557fp2@SERPINE3
4.28e-40FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_d3b5609c236b2a7388a18f54b52f557fp@chr13:99135322..99135327, -
4.28e-40FFCP PHASE1:Hg19::chr8:53853688..53853698,-#_d3b5609c236b2a7388a18f54b52f557fp3@BC033145
4.28e-40FFCP PHASE2:Hg19::chr8:53853688..53853698,-#_d3b5609c236b2a7388a18f54b52f557fp3@BC033145
4.28e-40FFCP PHASE1:Hg19::chr2:45166428..45166437,-#_d3b5609c236b2a7388a18f54b52f557fp4@ENST00000437916
4.28e-40FFCP PHASE1:Hg19::chr7:115723897..115723915,-#_d3b5609c236b2a7388a18f54b52f557fp@chr7:115723897..115723915, -
4.28e-40FFCP PHASE2:Hg19::chr2:45166428..45166437,-#_d3b5609c236b2a7388a18f54b52f557fp4@ENST00000437916
2.36e-37FFCP PHASE2:Hg19::chr16:82068585..82068600,+#_e740358943ccac8700de4377cce7a63cp8@HSD17B2
2.36e-37FFCP PHASE1:Hg19::chr16:82068585..82068600,+#_e740358943ccac8700de4377cce7a63cp8@HSD17B2
4.32e-37FFCP PHASE1:Hg19::chr1:203463245..203463294,+#_75618fe87ba813b6503a0cacbabb3b0cp1@OPTC
4.32e-37FFCP PHASE2:Hg19::chr1:203463245..203463294,+#_75618fe87ba813b6503a0cacbabb3b0cp1@OPTC
6.3e-37FFCP PHASE2:Hg19::chr13:36050976..36050990,+#_cfd83c12b7caa2b08f7168517ab2540cp8@NBEA
6.3e-37FFCP PHASE1:Hg19::chr13:36050976..36050990,+#_cfd83c12b7caa2b08f7168517ab2540cp8@NBEA
6.29e-36FFCP PHASE1:Hg19::chr2:45171888..45171968,+#_a464d31d53ca24339911baaa3102d89ep@chr2:45171888..45171968, +
6.29e-36FFCP PHASE2:Hg19::chr2:45171888..45171968,+#_a464d31d53ca24339911baaa3102d89ep@chr2:45171888..45171968, +
1.4e-35FFCP PHASE1:Hg19::chr3:150690508..150690520,-#_c2420ba6272e79bfbf0190399598df9bp1@CLRN1
1.4e-35FFCP PHASE2:Hg19::chr3:150690508..150690520,-#_c2420ba6272e79bfbf0190399598df9bp1@CLRN1
6.96e-35FFCP PHASE1:Hg19::chr2:45168959..45168990,+#_499221087e99e03cd8a75ae7dd3c1c0ap6@SIX3
6.96e-35FFCP PHASE2:Hg19::chr2:45168959..45168990,+#_499221087e99e03cd8a75ae7dd3c1c0ap6@SIX3
2.7e-34FFCP PHASE1:Hg19::chr8:99076509..99076530,+#_8c6be0625606f8dcc537d8b18eb3ec02p4@C8orf47
2.7e-34FFCP PHASE2:Hg19::chr8:99076509..99076530,+#_8c6be0625606f8dcc537d8b18eb3ec02p4@C8orf47
8.68e-34FFCP PHASE1:Hg19::chr18:56940611..56940660,-#_ab8f104b65e60f6728cf073fa80f9198p1@RAX
8.68e-34FFCP PHASE2:Hg19::chr18:56940611..56940660,-#_ab8f104b65e60f6728cf073fa80f9198p1@RAX
1.5e-32FFCP PHASE1:Hg19::chr2:45169039..45169058,-#_f79ac93cee9bb0c6576292036f6e5458p1@ENST00000419364
1.5e-32FFCP PHASE2:Hg19::chr2:45169039..45169058,-#_f79ac93cee9bb0c6576292036f6e5458p1@ENST00000419364
2.39e-32FFCP PHASE2:Hg19::chr14:60975914..60975925,+#_8f4399d0cb1a0cd37c6afb7a65b40943p5@SIX6
2.39e-32FFCP PHASE1:Hg19::chr14:60975914..60975925,+#_8f4399d0cb1a0cd37c6afb7a65b40943p5@SIX6
3.13e-32FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_b66457bb146cfd239ea61155ac69e45bp@chr11:109990513..109990520, -
3.13e-32FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_b66457bb146cfd239ea61155ac69e45bp@chr11:109990513..109990520, -
3.13e-32FFCP PHASE1:Hg19::chr11:31671561..31671580,+#_b66457bb146cfd239ea61155ac69e45bp@chr11:31671561..31671580, +
3.13e-32FFCP PHASE2:Hg19::chr11:31671561..31671580,+#_b66457bb146cfd239ea61155ac69e45bp@chr11:31671561..31671580, +
3.13e-32FFCP PHASE1:Hg19::chr2:35680607..35680613,-#_b66457bb146cfd239ea61155ac69e45bp@chr2:35680607..35680613, -
3.13e-32FFCP PHASE2:Hg19::chr2:35680607..35680613,-#_b66457bb146cfd239ea61155ac69e45bp@chr2:35680607..35680613, -
3.67e-32FFCP PHASE1:Hg19::chr7:131803806..131803815,+#_a441bc18fc5abb614a137bf82c199f62p@chr7:131803806..131803815, +
3.67e-32FFCP PHASE2:Hg19::chr7:131803806..131803815,+#_a441bc18fc5abb614a137bf82c199f62p@chr7:131803806..131803815, +
3.98e-32FFCP PHASE1:Hg19::chr13:36052762..36052767,-#_16a624e0b80e633c2f8386f335e6e89ap@chr13:36052762..36052767, -
3.98e-32FFCP PHASE2:Hg19::chr13:36052762..36052767,-#_16a624e0b80e633c2f8386f335e6e89ap@chr13:36052762..36052767, -
4.08e-32FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_2a5091f2b8609d226c3f195265c4e8fap@chr16:68301840..68301845, +
4.08e-32FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_2a5091f2b8609d226c3f195265c4e8fap@chr16:68301840..68301845, +
4.31e-32FFCP PHASE2:Hg19::chrX:106198807..106198826,-#_87b5da4a8ab39b11b84a6eade1cd1d78p@chrX:106198807..106198826, -
4.31e-32FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_87b5da4a8ab39b11b84a6eade1cd1d78p@chr5:70308745..70308754, -
4.31e-32FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_87b5da4a8ab39b11b84a6eade1cd1d78p@chr5:70308745..70308754, -
4.31e-32FFCP PHASE1:Hg19::chrX:106198807..106198826,-#_87b5da4a8ab39b11b84a6eade1cd1d78p@chrX:106198807..106198826, -
4.31e-32FFCP PHASE1:Hg19::chr16:58896129..58896134,-#_87b5da4a8ab39b11b84a6eade1cd1d78p@chr16:58896129..58896134, -
4.31e-32FFCP PHASE2:Hg19::chr16:58896129..58896134,-#_87b5da4a8ab39b11b84a6eade1cd1d78p@chr16:58896129..58896134, -
5.39e-32FFCP PHASE1:Hg19::chr2:45166354..45166379,-#_2468d92c5ed4b6d63c3f101973e7454dp1@ENST00000437916
5.39e-32FFCP PHASE2:Hg19::chr2:45166354..45166379,-#_2468d92c5ed4b6d63c3f101973e7454dp1@ENST00000437916
7.83e-32FFCP PHASE2:Hg19::chr13:24190079..24190098,+#_f07b12aa8a1243df7c6f21dfb151f0a4p@chr13:24190079..24190098, +
7.83e-32FFCP PHASE1:Hg19::chr13:24190079..24190098,+#_f07b12aa8a1243df7c6f21dfb151f0a4p@chr13:24190079..24190098, +
2.77e-31FFCP PHASE2:Hg19::chr2:45166478..45166502,-#_4f753206c66aef215af6f2abba029500p3@ENST00000437916
2.77e-31FFCP PHASE1:Hg19::chr2:45166478..45166502,-#_4f753206c66aef215af6f2abba029500p3@ENST00000437916
3.02e-31FFCP PHASE1:Hg19::chr22:31536360..31536389,-#_b6ac236fa4e457cdb23b7d76f73f3458p4@PLA2G3
3.02e-31FFCP PHASE2:Hg19::chr22:31536360..31536389,-#_b6ac236fa4e457cdb23b7d76f73f3458p4@PLA2G3
4.86e-31FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_afb04a2ec91c3218c7b6e8c7e0d121d0p@chr3:69928404..69928418, +
4.86e-31FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_afb04a2ec91c3218c7b6e8c7e0d121d0p@chr3:69928404..69928418, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0010230&oldid=3274689"