FFCP PHASE1:Hg19::chr6:152793678..152793688,-: Difference between revisions
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|ontology_enrichment_celltype=CL:0000242!9.24e-10!2 | |ontology_enrichment_celltype=CL:0000242!9.24e-10!2 | ||
|ontology_enrichment_celltype_v019=CL:0000123;4.27e-34;2!CL:0000242;4.27e-34;2!CL:0000312;1.50e-14;5!CL:0000240;2.31e-12;6!CL:0000311;2.31e-12;6!CL:0000079;2.31e-12;6!CL:0000237;2.31e-12;6!CL:0000138;2.31e-12;6!CL:0000153;1.08e-08;9!CL:0000447;1.08e-08;9!CL:0000362;1.08e-08;9 | |ontology_enrichment_celltype_v019=CL:0000123;4.27e-34;2!CL:0000242;4.27e-34;2!CL:0000312;1.50e-14;5!CL:0000240;2.31e-12;6!CL:0000311;2.31e-12;6!CL:0000079;2.31e-12;6!CL:0000237;2.31e-12;6!CL:0000138;2.31e-12;6!CL:0000153;1.08e-08;9!CL:0000447;1.08e-08;9!CL:0000362;1.08e-08;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.04e-34,2;CL:0000312,1.60e-14,5;CL:0000058,2.19e-12,6;CL:0000138,2.19e-12,6;CL:0000240,2.45e-12,6;CL:0000311,2.45e-12,6;CL:0000079,2.45e-12,6;CL:0000237,2.45e-12,6;CL:0000036,2.45e-12,6;CL:0000357,2.45e-12,6;CL:0000114,2.45e-12,6;CL:0000153,1.04e-08,9;CL:0000447,1.04e-08,9;CL:0000362,1.12e-08,9 | |||
|ontology_enrichment_development_v019=UBERON:0006215;4.09e-23;3!CL:0000357;2.31e-12;6!CL:0000114;2.31e-12;6 | |ontology_enrichment_development_v019=UBERON:0006215;4.09e-23;3!CL:0000357;2.31e-12;6!CL:0000114;2.31e-12;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;1.71e-66;1!DOID:4549;1.71e-66;1!DOID:5861;1.71e-66;1!DOID:6496;1.71e-66;1!DOID:201;2.31e-12;6!DOID:0060100;2.31e-12;6 | |ontology_enrichment_disease_v019=DOID:3371;1.71e-66;1!DOID:4549;1.71e-66;1!DOID:5861;1.71e-66;1!DOID:6496;1.71e-66;1!DOID:201;2.31e-12;6!DOID:0060100;2.31e-12;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3371,1.23e-66,1;DOID:4549,1.23e-66,1;DOID:5861,1.23e-66,1;DOID:6496,1.23e-66,1;DOID:201,2.19e-12,6;DOID:0060100,2.19e-12,6 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.79e-45!57;UBERON:0005068!2.79e-45!57;UBERON:0006241!2.79e-45!57;UBERON:0007135!2.79e-45!57;UBERON:0002616!1.51e-43!59;UBERON:0002780!2.12e-42!41;UBERON:0001890!2.12e-42!41;UBERON:0006240!2.12e-42!41;UBERON:0000955!8.27e-42!69;UBERON:0006238!8.27e-42!69;UBERON:0003080!2.76e-41!42;UBERON:0001893!4.08e-38!34;UBERON:0002020!5.52e-38!34;UBERON:0003528!5.52e-38!34;UBERON:0005743!2.07e-37!86;UBERON:0001017!8.88e-37!82;UBERON:0001869!1.38e-36!32;UBERON:0002791!4.12e-35!33;UBERON:0000073!3.03e-33!94;UBERON:0001016!3.03e-33!94;UBERON:0003075!1.13e-32!86;UBERON:0007284!1.13e-32!86;UBERON:0002346!6.31e-31!90;UBERON:0003056!1.17e-29!61;UBERON:0000033!4.40e-26!123;UBERON:0007023!1.24e-24!115;UBERON:0000153!1.54e-24!129;UBERON:0007811!1.54e-24!129;UBERON:0002619!3.68e-23!22;UBERON:0002420!1.09e-22!9;UBERON:0007245!1.09e-22!9;UBERON:0010009!1.09e-22!9;UBERON:0010011!1.09e-22!9;UBERON:0000454!1.09e-22!9;UBERON:0002308!5.88e-22!9;UBERON:0000125!5.88e-22!9;UBERON:0001950!1.90e-21!20;UBERON:0000956!3.49e-20!25;UBERON:0000203!3.49e-20!25;UBERON:0004121!9.57e-20!169;UBERON:0000924!4.08e-19!173;UBERON:0006601!4.08e-19!173;UBERON:0000369!1.30e-17!4;UBERON:0002435!1.30e-17!4;UBERON:0000204!1.30e-17!4;UBERON:0010082!1.30e-17!4;UBERON:0009663!2.37e-15!7;UBERON:0000349!6.20e-14!5;UBERON:0005383!1.48e-13!3;UBERON:0005382!1.48e-13!3;UBERON:0000025!8.40e-11!194;UBERON:0001873!9.24e-10!2;UBERON:0010122!9.24e-10!2;UBERON:0001876!1.35e-09!2;UBERON:0002148!1.19e-08!2;UBERON:0009662!1.19e-08!2;UBERON:0001871!1.26e-08!7;UBERON:0000475!2.34e-08!365;UBERON:0004111!3.23e-08!241;UBERON:0004733!3.30e-08!12;UBERON:0002028!3.30e-08!12;UBERON:0007277!3.30e-08!12;UBERON:0000064!5.53e-08!219;UBERON:0001872!8.70e-08!5;UBERON:0004732!1.49e-07!13;UBERON:0000483!1.72e-07!309;UBERON:0002680!1.89e-07!9;UBERON:0001895!1.89e-07!9;UBERON:0010092!1.89e-07!9;UBERON:0000119!2.39e-07!312;UBERON:0000477!3.40e-07!286 | |ontology_enrichment_uberon=UBERON:0001049!2.79e-45!57;UBERON:0005068!2.79e-45!57;UBERON:0006241!2.79e-45!57;UBERON:0007135!2.79e-45!57;UBERON:0002616!1.51e-43!59;UBERON:0002780!2.12e-42!41;UBERON:0001890!2.12e-42!41;UBERON:0006240!2.12e-42!41;UBERON:0000955!8.27e-42!69;UBERON:0006238!8.27e-42!69;UBERON:0003080!2.76e-41!42;UBERON:0001893!4.08e-38!34;UBERON:0002020!5.52e-38!34;UBERON:0003528!5.52e-38!34;UBERON:0005743!2.07e-37!86;UBERON:0001017!8.88e-37!82;UBERON:0001869!1.38e-36!32;UBERON:0002791!4.12e-35!33;UBERON:0000073!3.03e-33!94;UBERON:0001016!3.03e-33!94;UBERON:0003075!1.13e-32!86;UBERON:0007284!1.13e-32!86;UBERON:0002346!6.31e-31!90;UBERON:0003056!1.17e-29!61;UBERON:0000033!4.40e-26!123;UBERON:0007023!1.24e-24!115;UBERON:0000153!1.54e-24!129;UBERON:0007811!1.54e-24!129;UBERON:0002619!3.68e-23!22;UBERON:0002420!1.09e-22!9;UBERON:0007245!1.09e-22!9;UBERON:0010009!1.09e-22!9;UBERON:0010011!1.09e-22!9;UBERON:0000454!1.09e-22!9;UBERON:0002308!5.88e-22!9;UBERON:0000125!5.88e-22!9;UBERON:0001950!1.90e-21!20;UBERON:0000956!3.49e-20!25;UBERON:0000203!3.49e-20!25;UBERON:0004121!9.57e-20!169;UBERON:0000924!4.08e-19!173;UBERON:0006601!4.08e-19!173;UBERON:0000369!1.30e-17!4;UBERON:0002435!1.30e-17!4;UBERON:0000204!1.30e-17!4;UBERON:0010082!1.30e-17!4;UBERON:0009663!2.37e-15!7;UBERON:0000349!6.20e-14!5;UBERON:0005383!1.48e-13!3;UBERON:0005382!1.48e-13!3;UBERON:0000025!8.40e-11!194;UBERON:0001873!9.24e-10!2;UBERON:0010122!9.24e-10!2;UBERON:0001876!1.35e-09!2;UBERON:0002148!1.19e-08!2;UBERON:0009662!1.19e-08!2;UBERON:0001871!1.26e-08!7;UBERON:0000475!2.34e-08!365;UBERON:0004111!3.23e-08!241;UBERON:0004733!3.30e-08!12;UBERON:0002028!3.30e-08!12;UBERON:0007277!3.30e-08!12;UBERON:0000064!5.53e-08!219;UBERON:0001872!8.70e-08!5;UBERON:0004732!1.49e-07!13;UBERON:0000483!1.72e-07!309;UBERON:0002680!1.89e-07!9;UBERON:0001895!1.89e-07!9;UBERON:0010092!1.89e-07!9;UBERON:0000119!2.39e-07!312;UBERON:0000477!3.40e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0002418;2.93e-23;3!UBERON:0004755;2.93e-23;3!UBERON:0002037;2.74e-12;6!UBERON:0002680;1.21e-08;9!UBERON:0001895;1.21e-08;9!UBERON:0004733;8.38e-07;12!UBERON:0002028;8.38e-07;12 | |ontology_enrichment_uberon_v019=UBERON:0002418;2.93e-23;3!UBERON:0004755;2.93e-23;3!UBERON:0002037;2.74e-12;6!UBERON:0002680;1.21e-08;9!UBERON:0001895;1.21e-08;9!UBERON:0004733;8.38e-07;12!UBERON:0002028;8.38e-07;12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002418,2.62e-23,3;UBERON:0004755,2.62e-23,3;UBERON:0002037,2.74e-12,6;UBERON:0006215,2.74e-12,6;UBERON:0002680,1.21e-08,9;UBERON:0001895,1.21e-08,9;UBERON:0010092,1.21e-08,9;UBERON:0004733,8.38e-07,12;UBERON:0002028,8.38e-07,12;UBERON:0007277,8.38e-07,12 | |||
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| ||
|short_description=p50@SYNE1 | |short_description=p50@SYNE1 | ||
}} | }} |
Revision as of 12:19, 17 November 2012
Short description: | p50@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_50_at_SYNE1_5end |
Coexpression cluster: | NA |
Association with transcript: | -24bp_to_ENST00000468937_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.04e-34 | 2 |
keratinocyte | 1.60e-14 | 5 |
chondroblast | 2.19e-12 | 6 |
chondrocyte | 2.19e-12 | 6 |
stratified squamous epithelial cell | 2.45e-12 | 6 |
keratin accumulating cell | 2.45e-12 | 6 |
stratified epithelial cell | 2.45e-12 | 6 |
keratinizing barrier epithelial cell | 2.45e-12 | 6 |
epithelial fate stem cell | 2.45e-12 | 6 |
stratified epithelial stem cell | 2.45e-12 | 6 |
surface ectodermal cell | 2.45e-12 | 6 |
GAG secreting cell | 1.04e-08 | 9 |
carbohydrate secreting cell | 1.04e-08 | 9 |
epidermal cell | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
cartilage tissue | 2.62e-23 | 3 |
skeletal tissue | 2.62e-23 | 3 |
cerebellum | 2.74e-12 | 6 |
rhombic lip | 2.74e-12 | 6 |
regional part of metencephalon | 1.21e-08 | 9 |
metencephalon | 1.21e-08 | 9 |
future metencephalon | 1.21e-08 | 9 |
segmental subdivision of hindbrain | 8.38e-07 | 12 |
hindbrain | 8.38e-07 | 12 |
presumptive hindbrain | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.23e-66 | 1 |
extraosseous chondrosarcoma | 1.23e-66 | 1 |
myxoid chondrosarcoma | 1.23e-66 | 1 |
extraskeletal myxoid chondrosarcoma | 1.23e-66 | 1 |
connective tissue cancer | 2.19e-12 | 6 |
musculoskeletal system cancer | 2.19e-12 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.