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MacroAPE 1083:TGIF1 f1: Difference between revisions

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1!10717-109I6;0.00701058!10455-106G5;0.0872482!10534-107G3;0.0335919!10429-106D6;0.000683135!10464-106H5;0.140098!10827-111C8;0.0121495!10789-110H6;0.0889371!10828-111C9;0.159722!10788-110H5;0.4956!10792-110H9;0.000295055!10765-110E9;0.0702191!10829-111D1;0.011035!10830-111D2;0.0221308!10831-111D3;0.4011!10832-111D4;0.00934668!10833-111D5;0.00116732!10764-110E8;0.00151394!10770-110F5;0.200087!10399-106A3;0.0765238!10400-106A4;0.0405822!10405-106A9;0.0653024!10834-111D6;0.0819768!10835-111D7;0.0194307!10836-111D8;0.00247188!10837-111D9;0.015477!10699-109G6;3.64237e-05!10802-111A1;0.012035!10796-110I4;0.00146649!10010-101C1;0.107128!10810-111A9;0.0204794!10421-106C7;0.000131571!10708-109H6;0.00677097!12235-129G3;0.0706086!12236-129G4;0.00658612!12237-129G5;0.581887!10167-103B5;0.0493251!10151-102I7;0.0428907!10428-106D5;0.0502764!10795-110I3;0.235299!10805-111A4;0.00264357!10052-101G7;0.238603!10189-103D9;0.0513344!10589-108D4;0.0154109!10425-106D2;0.311297!10427-106D4;0.64071!10702-109G9;0.822042!10432-106D9;0.926701!10496-107C1;0.0413924!10718-109I7;0.177965!10011-101C2;0.00959036!10053-101G8;0.00156038!10686-109F2;0.953641!10084-102B3;0.934432!10012-101C3;0.120334!10085-102B4;0.0625957!10482-107A5;0.237574!10419-106C5;0.528601!10080-102A8;0.810476!10760-110E4;0.113523!10709-109H7;0.115303!10710-109H8;0.240981!10703-109H1;0.45302!10719-109I8;0.336054!10642-109A3;0.197332!10177-103C6;0.823273!10164-103B2;0.0681631!10173-103C2;0.119411!10166-103B4;0.196352!10083-102B2;0.0829262!10188-103D8;0.228402!10552-107I3;0.0948792!10553-107I4;0.0321326!10013-101C4;0.0809687!10536-107G5;0.0239147!10618-108G6;0.116616!10423-106C9;0.90215!10785-110H2;0.404084!12238-129G6;0.814886!12239-129G7;0.00297961!12240-129G8;0.593645!10416-106C2;0.00608347!10801-110I9;0.00576983!10766-110F1;0.000233645!10824-111C5;0.0124199!10825-111C6;0.00011317!10826-111C7;0.000260312!10454-106G4;0.000454679!10409-106B4;0.000469769!10638-108I8;0.0133465!10636-108I6;0.0164297!10513-107D9;0.979839!10420-106C6;0.0890352!10082-102B1;0.150899!10014-101C5;0.0249909!10070-101I7;0.00012646!10452-106G2;0.00109674!10453-106G3;0.290404!10449-106F8;0.010418!10042-101F6;0.0122764!10069-101I6;0.0392346!10193-103E4;0.00523015!10631-108I1;0.182733!10438-106E6;0.0147869!10488-107B2;0.783583!10196-103E7;0.128691!10071-101I8;0.00152001!10071-101I8;0.126983!10041-101F5;0.16629!10451-106G1;0.0294211!10450-106F9;0.619467!10604-108F1;0.804622!10605-108F2;0.0387485!10606-108F3;0.00223838!10603-108E9;0.0326622!10497-107C2;0.0524107!10448-106F7;0.549965!10643-109A4;0.0479057!10426-106D3;0.809917!10431-106D8;0.776041!10197-103E8;0.0513711!10443-106F2;0.000187878!10815-111B5;0.0776172!10816-111B6;0.0144336!10817-111B7;0.0260565!10015-101C6;0.00958945!10410-106B5;0.00431521!10054-101G9;0.271616!10758-110E2;0.0189827!10711-109H9;0.000722903!10040-101F4;0.00179763!10470-106I2;0.0582779!10415-106C1;0.630712!10198-103E9;0.363495!10614-108G2;0.0756587!10612-108F9;0.354599!10549-107H9;0.75254!10615-108G3;0.077105!10487-107B1;0.00731025!10433-106E1;0.464007!10688-109F4;0.178753!10444-106F3;0.483462!10444-106F3;0.519338!10485-107A8;0.472119!10413-106B8;0.00131471!10175-103C4;0.0515445!10161-103A8;0.141619!12131-128D7;0.101!10624-108H3;0.34131!10712-109I1;0.259347!10205-103F7;0.00427494!10206-103F8;0.0257537!10207-103F9;0.0169367!10050-101G5;0.132983!10051-101G6;6.30082e-05!10016-101C7;0.00359234!10046-101G1;0.00423648!10778-110G4;0.0133784!10633-108I3;0.986165!10818-111B8;0.210949!10819-111B9;0.00258938!10820-111C1;0.000839646!10484-107A7;0.00234923!10808-111A7;0.221761!10169-103B7;0.019292!10153-102I9;0.0327996!13425-144D5;0.0512721!13433-144E4;0.00267978!13437-144E8;0.00500953!11904-125F5;0.00513838!11905-125F6;0.160148!10039-101F3;0.102643!10791-110H8;0.0686093!10017-101C8;0.408079!10045-101F9;1.12189e-05!10509-107D5;0.00788838!10839-111E2;0.103057!10692-109F8;0.00785282!10079-102A7;0.447685!10078-102A6;0.00527681!10721-110A1;0.0610641!10569-108B2;2.32418e-05!10570-108B3;0.573185!10571-108B4;0.563397!10647-109A8;0.686826!10752-110D5;0.400896!10782-110G8;0.0127592!10726-110A6;0.559694!10018-101C9;0.000622372!10086-102B5;0.0267709!10182-103D2;0.0994691!10165-103B3;0.0762158!10499-107C4;0.0779904!10408-106B3;0.581152!10019-101D1;0.300566!10068-101I5;0.0213727!10075-102A3;0.032116!10077-102A5;0.0288447!10727-110A7;0.443967!10775-110G1;0.00262586!10412-106B7;0.0918593!12231-129F8;0.618049!12232-129F9;0.00629584!12233-129G1;0.00397729!12234-129G2;0.01946!10414-106B9;0.0191879!10170-103B8;0.310023!10183-103D3;0.0949302!10150-102I6;0.114429!10174-103C3;0.0579668!10155-103A2;0.0439173!10038-101F2;0.0373067!10838-111E1;0.0203474!10759-110E3;0.0146626!10514-107E1;5.88086e-07!10465-106H6;0.443614!10691-109F7;0.0200507!10843-111E6;0.213116!10844-111E7;0.690819!11747-123G1;0.449026!11748-123G2;0.245264!11749-123G3;0.590017!11750-123G4;0.30203!11751-123G5;0.81125!11840-124H4;0.363913!11752-123G6;0.257904!11753-123G7;0.175965!11754-123G8;0.847023!11755-123G9;0.315614!11756-123H1;0.107104!11833-124G6;0.704747!11760-123H5;0.686421!11836-124G9;0.202542!11758-123H3;0.405022!11835-124G8;0.729089!11762-123H7;0.516921!11838-124H2;0.27298!11757-123H2;0.47617!11759-123H4;0.835782!11761-123H6;0.572028!11842-124H6;0.751782!11837-124H1;0.400196!10568-108B1;0.59954!13230-141I8;0.145603!13231-141I9;0.544149!10696-109G3;0.37675!10493-107B7;0.187565!10494-107B8;0.120152!10850-111F4;0.838239!10851-111F5;0.0140011!10852-111F6;0.00228739!10853-111F7;0.0506194!10854-111F8;0.00228863!10855-111F9;0.00562309!10856-111G1;0.00857039!10847-111F1;0.0564853!10846-111E9;0.0893584!10848-111F2;0.037796!10845-111E8;0.967276!10857-111G2;0.0750939!10858-111G3;0.00820302!10156-103A3;0.788531!11901-125F2;0.0689184!11902-125F3;0.684947!11903-125F4;0.983936!10689-109F5;0.705192!10648-109A9;0.464538!10784-110H1;0.000185605!10744-110C6;0.936363!10772-110F7;0.00426609!10474-106I6;0.00268304!10600-108E6;0.631075!10684-109E9;0.251884!12226-129F3;0.4562!12227-129F4;0.360668!10508-107D4;0.054274!10539-107G8;0.219939!10607-108F4;0.368984!10555-107I6;0.0426742!10774-110F9;0.154891!10637-108I7;5.13559e-05!10663-109C6;0.046889!10728-110A8;0.0560597!10729-110A9;0.00908872!10430-106D7;0.939451!10730-110B1;0.0499737!10813-111B3;0.396534!10812-111B2;0.0347157!10037-101F1;0.207344!10172-103C1;0.0618924!10163-103B1;0.0421214!10076-102A4;0.0801431!10073-102A1;0.157323!10036-101E9;0.331895!10195-103E6;0.0637397!10277-104E7;0.0792656!10434-106E2;0.0623419!10550-107I1;0.544621!10545-107H5;0.123779!10544-107H4;0.615219!10704-109H2;0.422863!10510-107D6;0.025322!10558-107I9;0.359542!10020-101D2;0.833429!10732-110B3;0.433659!10049-101G4;0.00405661!10698-109G5;0.00280576!10437-106E5;0.915126!10417-106C3;0.0756992!10035-101E8;0.794361!10171-103B9;0.0562494!10157-103A4;0.12209!10034-101E7;0.0708249!10072-101I9;0.0580952!10199-103F1;0.462562!10200-103F2;6.13041e-05!10697-109G4;0.000108146!10723-110A3;0.433983!10179-103C8;0.787869!10160-103A7;0.00124264!10180-103C9;0.00722635!10162-103A9;0.000212515!10021-101D3;0.0023823!10840-111E3;0.00227047!10706-109H4;0.880698!10033-101E6;0.548407!10032-101E5;0.0467568!10490-107B4;0.0477788!10439-106E7;0.0063748!10022-101D4;0.178291!10176-103C5;0.0154789!10469-106I1;0.173419!10067-101I4;0.286287!10411-106B6;0.585623!10471-106I3;0.782258!10030-101E3;0.423363!10475-106I7;0.0200111!10787-110H4;0.0028403!10477-106I9;0.225069!10695-109G2;0.398042!11771-123I7;0.573896!11772-123I8;0.0378236!11773-123I9;0.148914!10093-102C3;0.092576!10442-106F1;0.000250014!10442-106F1;0.906636!10201-103F3;0.831671!10639-108I9;0.00390039!11843-124H7;0.315823!11841-124H5;0.077037!10693-109F9;0.00325389!10436-106E4;0.542011!10483-107A6;0.379814!10282-104F3;0.726315!10023-101D5;0.000812005!10066-101I3;0.000343276!10065-101I2;0.02497!10800-110I8;0.00129746!10610-108F7;0.0429452!10841-111E4;0.706711!10541-107H1;0.0356564!10842-111E5;0.873461!10562-108A4;0.104581!10024-101D6;0.00823209!10064-101I1;1.369e-06!10609-108F6;0.0977642!10048-101G3;8.71863e-05!10781-110G7;0.0406069!10181-103D1;0.000614565!10159-103A6;0.0579085!10056-101H2;0.0532458!10737-110B8;0.0936025!10025-101D7;0.833357!10044-101F8;0.3202!10424-106D1;0.112518!10463-106H4;0.35163!10616-108G4;0.465876!10486-107A9;0.879291!10062-101H8;0.300499!10202-103F4;0.125617!10158-103A5;5.94879e-05!10441-106E9;0.0322587!10031-101E4;0.0698577!10063-101H9;0.0615693!10063-101H9;0.260327!11763-123H8;0.0143291!11765-123I1;0.550086!11768-123I4;0.745899!10807-111A6;0.688701!10790-110H7;0.00162343!10798-110I6;0.0229678!10786-110H3;0.00027399!10591-108D6;0.105581!10593-108D8;0.138364!10590-108D5;0.257146!10026-101D8;0.0310182!10096-102C6;0.247861!10168-103B6;0.453381!10154-103A1;0.0520932!10209-103G2;0.0708019!10061-101H7;5.84892e-06!10027-101D9;0.0105177!10043-101F7;0.711222!10783-110G9;0.160115!10028-101E1;0.0187284!10060-101H6;0.000525687!10203-103F5;0.00622443!10059-101H5;5.40573e-06!10047-101G2;4.2907e-05!10029-101E2;3.64117e-06!10058-101H4;0.00283091!10418-106C4;0.00306957!10492-107B6;0.347234!10694-109G1;0.0315452!10797-110I5;0.0351835!10057-101H3;0.960002!10100-102D1;0.00385866!10055-101H1;0.0303349!10204-103F6;0.236913!10191-103E2;0.00182161!10563-108A5;0.00360743
|name=TGIF1_f1
|name=TGIF1_f1
|tomtom_result=INSM1#MA0155.1;0;0.000592977;0.282257;0.303337;12;TGTCAGGTGTCACCTG;TGTCAGGGGGCG;+!sna#MA0086.1;-3;0.000642361;0.305764;0.303337;6;TGTCAGGTGTCACCTG;CAGGTG;+!vis#MA0252.1;-6;0.00194019;0.92353;0.390309;6;TGTCAGGTGTCACCTG;CTGTCA;-!HAC1#MA0310.1;-3;0.00269412;1.2824;0.390309;8;TGTCAGGTGTCACCTG;CACGTGTC;-!h#MA0449.1;-1;0.00286747;1.36491;0.390309;10;TGTCAGGTGTCACCTG;GGCACGTGCC;+!ZEB1#MA0103.1;-3;0.00330615;1.57373;0.390309;6;TGTCAGGTGTCACCTG;CAGGTG;-!Six4#MA0204.1;-6;0.00330615;1.57373;0.390309;6;TGTCAGGTGTCACCTG;GTATCA;-!ceh-22#MA0264.1;0;0.00405344;1.92944;0.400727;11;TGTCAGGTGTCACCTG;TTTCAAGTGGT;-!Tal1::Gata1#MA0140.1;2;0.00503523;2.39677;0.400727;16;TGTCAGGTGTCACCTG;CTTATCTGTCCCCACCAG;-!GCN4#MA0303.1;2;0.0051391;2.44621;0.400727;16;TGTCAGGTGTCACCTG;CAAGGGATGAGTCATACTTCA;+!RTG3#MA0376.1;4;0.00581532;2.76809;0.400727;16;TGTCAGGTGTCACCTG;GACTAAGCACGTGCTAATAT;-!BAS1#MA0278.1;3;0.00582389;2.77217;0.400727;16;TGTCAGGTGTCACCTG;GCACAGCCAGAGTCAAGTCAA;+!CUP9#MA0288.1;-3;0.00594018;2.82753;0.400727;9;TGTCAGGTGTCACCTG;AATGTGTCA;-!Mafb#MA0117.1;-6;0.00639241;3.04279;0.402485;8;TGTCAGGTGTCACCTG;GCGTCAGC;-!Gamyb#MA0034.1;-1;0.00768525;3.65818;0.453643;10;TGTCAGGTGTCACCTG;GGCGGTTGTC;-!TYE7#MA0409.1;-2;0.00876093;4.1702;0.486718;7;TGTCAGGTGTCACCTG;TCACGTG;-!GAL4#MA0299.1;-1;0.0153882;7.32477;0.628001;15;TGTCAGGTGTCACCTG;GAGTACTGTTCCCCG;-!PPARG::RXRA#MA0065.2;5;0.0156338;7.44171;0.628001;15;TGTCAGGTGTCACCTG;CTAGGGGTCAAAGGTCATCG;+!twi#MA0249.1;0;0.0156727;7.46022;0.628001;12;TGTCAGGTGTCACCTG;TCGCATATGTTG;+!achi#MA0207.1;-6;0.0161109;7.66879;0.628001;6;TGTCAGGTGTCACCTG;CTGTCA;-!ESR1#MA0112.2;-1;0.016859;8.0249;0.628001;15;TGTCAGGTGTCACCTG;GGCCCAGGTCACCCTGACCT;+!hth#MA0227.1;-6;0.0171675;8.17174;0.628001;6;TGTCAGGTGTCACCTG;CTGTCA;-!ARG81#MA0272.1;-5;0.0172885;8.22933;0.628001;8;TGTCAGGTGTCACCTG;AGAGTCAC;-!PPARG::RXRA#MA0065.2;3;0.0200321;9.53527;0.677219;12;TGTCAGGTGTCACCTG;GTAGGGCAAAGGTCA;+!Pax4#MA0068.1;-1;0.0200775;9.55691;0.677219;15;TGTCAGGTGTCACCTG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-
}}
}}

Latest revision as of 14:59, 7 September 2012

Full Name: TGIF1_f1

Motif matrix
POACGT
12.4677419354838781.48064516129032692.4677419354838786.525806451612916
20.98709677419355120.010.9677419354838970.9870967741935512
30.98709677419355120.03.9483870967742058.006451612903243
40.07.8967741935483974.0580645161290380.9870967741935512
59.9806451612903460.98709677419355120.01.9741935483871025
61.97419354838710252.08387096774193566.9096774193548591.9741935483871025
71.97419354838710252.08387096774193566.9096774193548591.9741935483871025
82.96129032258065370.00.09.980645161290346
90.98709677419355121.97419354838710259.9806451612903460.0
102.96129032258065370.01.97419354838710258.006451612903243
110.08.8838709677419472.08387096774193561.9741935483871025
128.9935483870967940.03.9483870967742050.0
131.97419354838710255.0451612903225893.9483870967742051.9741935483871025
140.98709677419355128.0064516129032431.97419354838710251.9741935483871025
152.96129032258065371.97419354838710251.97419354838710256.0322580645161405
161.48064516129032692.4677419354838785.5387096774193653.4548387096774293

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
INSM1#MA0155.100.0005929770.2822570.30333712TGTCAGGTGTCACCTGTGTCAGGGGGCG+
sna#MA0086.1-30.0006423610.3057640.3033376TGTCAGGTGTCACCTGCAGGTG+
vis#MA0252.1-60.001940190.923530.3903096TGTCAGGTGTCACCTGCTGTCA-
HAC1#MA0310.1-30.002694121.28240.3903098TGTCAGGTGTCACCTGCACGTGTC-
h#MA0449.1-10.002867471.364910.39030910TGTCAGGTGTCACCTGGGCACGTGCC+
ZEB1#MA0103.1-30.003306151.573730.3903096TGTCAGGTGTCACCTGCAGGTG-
Six4#MA0204.1-60.003306151.573730.3903096TGTCAGGTGTCACCTGGTATCA-
ceh-22#MA0264.100.004053441.929440.40072711TGTCAGGTGTCACCTGTTTCAAGTGGT-
Tal1::Gata1#MA0140.120.005035232.396770.40072716TGTCAGGTGTCACCTGCTTATCTGTCCCCACCAG-
GCN4#MA0303.120.00513912.446210.40072716TGTCAGGTGTCACCTGCAAGGGATGAGTCATACTTCA+
RTG3#MA0376.140.005815322.768090.40072716TGTCAGGTGTCACCTGGACTAAGCACGTGCTAATAT-
BAS1#MA0278.130.005823892.772170.40072716TGTCAGGTGTCACCTGGCACAGCCAGAGTCAAGTCAA+
CUP9#MA0288.1-30.005940182.827530.4007279TGTCAGGTGTCACCTGAATGTGTCA-
Mafb#MA0117.1-60.006392413.042790.4024858TGTCAGGTGTCACCTGGCGTCAGC-
Gamyb#MA0034.1-10.007685253.658180.45364310TGTCAGGTGTCACCTGGGCGGTTGTC-
TYE7#MA0409.1-20.008760934.17020.4867187TGTCAGGTGTCACCTGTCACGTG-
GAL4#MA0299.1-10.01538827.324770.62800115TGTCAGGTGTCACCTGGAGTACTGTTCCCCG-
PPARG::RXRA#MA0065.250.01563387.441710.62800115TGTCAGGTGTCACCTGCTAGGGGTCAAAGGTCATCG+
twi#MA0249.100.01567277.460220.62800112TGTCAGGTGTCACCTGTCGCATATGTTG+
achi#MA0207.1-60.01611097.668790.6280016TGTCAGGTGTCACCTGCTGTCA-
ESR1#MA0112.2-10.0168598.02490.62800115TGTCAGGTGTCACCTGGGCCCAGGTCACCCTGACCT+
hth#MA0227.1-60.01716758.171740.6280016TGTCAGGTGTCACCTGCTGTCA-
ARG81#MA0272.1-50.01728858.229330.6280018TGTCAGGTGTCACCTGAGAGTCAC-
PPARG::RXRA#MA0065.230.02003219.535270.67721912TGTCAGGTGTCACCTGGTAGGGCAAAGGTCA+
Pax4#MA0068.1-10.02007759.556910.67721915TGTCAGGTGTCACCTGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
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