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MCL coexpression mm9:1855: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004535!1.81e-11!23;UBERON:0001009!1.81e-11!23;UBERON:0007100!7.57e-10!18;UBERON:0000948!7.57e-10!18;UBERON:0005498!7.57e-10!18;UBERON:0004140!7.57e-10!18;UBERON:0009881!7.57e-10!18;UBERON:0004141!7.57e-10!18;UBERON:0003084!7.57e-10!18;UBERON:0007005!7.57e-10!18;UBERON:0004139!7.57e-10!18;UBERON:0004291!7.57e-10!18;UBERON:0002048!7.72e-09!14;UBERON:0000117!7.72e-09!14;UBERON:0000171!7.72e-09!14;UBERON:0000170!7.72e-09!14;UBERON:0005597!7.72e-09!14;UBERON:0000118!7.72e-09!14;UBERON:0004872!3.40e-08!33;UBERON:0005153!2.48e-07!17
}}
}}

Revision as of 17:32, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr9:63869705..63869713,-p8@Smad6
Mm9::chr9:63869751..63869767,-p1@Smad6
Mm9::chr9:63869802..63869815,-p3@Smad6
Mm9::chr9:63869834..63869849,-p5@Smad6
Mm9::chr9:63869850..63869873,-p2@Smad6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
cardiovascular system1.81e-1123
circulatory system1.81e-1123
primary circulatory organ7.57e-1018
heart7.57e-1018
primitive heart tube7.57e-1018
primary heart field7.57e-1018
anterior lateral plate mesoderm7.57e-1018
heart tube7.57e-1018
heart primordium7.57e-1018
cardiac mesoderm7.57e-1018
cardiogenic plate7.57e-1018
heart rudiment7.57e-1018
lung7.72e-0914
respiratory tube7.72e-0914
respiration organ7.72e-0914
pair of lungs7.72e-0914
lung primordium7.72e-0914
lung bud7.72e-0914
splanchnic layer of lateral plate mesoderm3.40e-0833
epithelial bud2.48e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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