FFCP PHASE1:Mm9::chr8:108804912..108804931,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=58994|HGNC=|MCL_coexpression_id=3650|UniProt=Q9JJY3|association_with_transcript=-34bp_to_uc009nfx.1_5end|description=CAGE_peak_3_at_Smpd3_5end|id=chr8:108804912..108804931,-|ontology_enrichment_celltype=CL:0002563!4.89e-09!9;CL:0002251!4.89e-09!9;CL:0000066!7.70e-08!25;CL:0000223!6.57e-07!20|ontology_enrichment_celltype_v019_2=CL:0002563,3.65e-15,9;CL:0002251,3.65e-15,9;CL:0000066,5.44e-11,25;CL:0000239,1.01e-10,6;CL:0000677,1.01e-10,6;CL:0000584,1.01e-10,6;CL:0000075,4.58e-09,7;CL:0000223,1.02e-08,20;CL:0002076,2.53e-08,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!8.10e-21!59;UBERON:0000160!2.74e-17!43;UBERON:0000344!5.69e-15!15;UBERON:0004119!5.00e-14!130;UBERON:0000925!5.00e-14!130;UBERON:0006595!5.00e-14!130;UBERON:0001007!7.05e-14!128;UBERON:0001555!7.05e-14!128;UBERON:0007026!7.05e-14!128;UBERON:0001242!5.65e-13!13;UBERON:0000060!5.65e-13!13;UBERON:0001262!5.65e-13!13;UBERON:0004786!5.65e-13!13;UBERON:0004921!1.48e-12!126;UBERON:0004185!1.48e-12!126;UBERON:0004923!1.95e-09!24;UBERON:0003350!4.89e-09!9;UBERON:0004808!4.89e-09!9;UBERON:0001277!4.89e-09!9;UBERON:0000485!7.52e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.24e-48,47;UBERON:0000160,9.21e-44,31;UBERON:0000344,5.54e-26,15;UBERON:0001242,2.46e-22,13;UBERON:0001262,2.46e-22,13;UBERON:0004786,2.46e-22,13;UBERON:0001007,1.36e-20,116;UBERON:0001555,1.36e-20,116;UBERON:0007026,1.36e-20,116;UBERON:0004119,4.62e-20,118;UBERON:0000925,4.62e-20,118;UBERON:0006595,4.62e-20,118;UBERON:0004921,2.46e-18,114;UBERON:0004923,1.04e-16,24;UBERON:0003350,3.65e-15,9;UBERON:0004808,3.65e-15,9;UBERON:0001277,3.65e-15,9;UBERON:0000485,4.77e-12,11;UBERON:0002108,1.36e-08,4;UBERON:0000945,3.11e-07,16;UBERON:0010039,3.11e-07,16;UBERON:0000331,4.45e-07,3;UBERON:0002116,4.45e-07,3;UBERON:0001204,4.45e-07,3;UBERON:0001168,4.45e-07,3|phase1_expression=0,9.42233600626275,8.18998630901165,13.6108895088074,11.0197060588196,9.56911849897772,13.0823078733494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,18.3991286212418,15.5998311125676,6.31655160526522,11.1998119001359,10.1271479362368,20.5225293012884,16.6339885641554,22.1730510655305,0,0,0,8.66554859253824,11.470190529736,8.77928231928187,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279972843250725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,4.54843492213368,10.7526452903361,1.54488862144927,0,0,0,0,0,0,0,0.432982082022428,0.506719730950197,0,2.16949371466214,0,0,0,0,0,0.150722640552623,0,0,5.6854842578906,0,0,0,0.220841518460394,0,24.2309289583559,0,0,20.9474785271045,0,0,0,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0.189106080167819,0,0.43839146485515,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0,0,11.5646574044329,18.2470890997846,0,0.464473343720877,2.31961430379768,1.81515172161008,2.66853652613844,4.94586627892654,17.5575752771469,3.78807595865225,4.52403375840485,3.58121649674071,2.9244613067868,20.6728463990471,14.2651112917298,13.9398891278057,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0.166845105716094,0.196558995113203,0.674586337154561,0,0.241177159752417,0,0.287696137450811,0.810676133875177,0.274561413188081,0,1.11642284300551,0.312037673114561,0.757736633841335,1.61457672169721,0.482443521363367,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42366414172764,0,0,0,0,0,0,10.4933101186746,0,0,0,0,0,0,0,0,0,0,15.2747298882418,0.316335993581135,2.03319467126849,4.64422965533745,9.61806161666556,11.7915784422936,6.74321731924104,8.01738520535759,9.6849698534091,7.77689839750757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.24182309202693,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.666740183404846,0.206035057238894,0,0.252697211763798,0.25347929989024,0.377252682772152,0.561849044819294,0.256100609619477,0.229741875822453,0,0.347652977834566,0.192909220463705,0.412085900803307,0.294397840268795,1.02860775715625,0,0.715308569841963,0.436039249896986,0.282328141245992,0.592302255241736,0.182927972872773,0.263069711437843,0.135804113845862,0.561142271657738,0.118635018124174,0.492522411877817,0,0.464810523557898,0,0,0.233931608445408,1.50409737833809,0.191288332068843,0.441182838239031,0.927471342481686|short_description=p3@Smpd3}} | ||
|EntrezGene=58994 | |||
|HGNC= | |||
|MCL_coexpression_id=3650 | |||
|UniProt=Q9JJY3 | |||
|association_with_transcript=-34bp_to_uc009nfx.1_5end | |||
|description=CAGE_peak_3_at_Smpd3_5end | |||
|id=chr8:108804912..108804931,- | |||
|ontology_enrichment_celltype=CL:0002563!4.89e-09!9;CL:0002251!4.89e-09!9;CL:0000066!7.70e-08!25;CL:0000223!6.57e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.65e-15,9;CL:0002251,3.65e-15,9;CL:0000066,5.44e-11,25;CL:0000239,1.01e-10,6;CL:0000677,1.01e-10,6;CL:0000584,1.01e-10,6;CL:0000075,4.58e-09,7;CL:0000223,1.02e-08,20;CL:0002076,2.53e-08,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!8.10e-21!59;UBERON:0000160!2.74e-17!43;UBERON:0000344!5.69e-15!15;UBERON:0004119!5.00e-14!130;UBERON:0000925!5.00e-14!130;UBERON:0006595!5.00e-14!130;UBERON:0001007!7.05e-14!128;UBERON:0001555!7.05e-14!128;UBERON:0007026!7.05e-14!128;UBERON:0001242!5.65e-13!13;UBERON:0000060!5.65e-13!13;UBERON:0001262!5.65e-13!13;UBERON:0004786!5.65e-13!13;UBERON:0004921!1.48e-12!126;UBERON:0004185!1.48e-12!126;UBERON:0004923!1.95e-09!24;UBERON:0003350!4.89e-09!9;UBERON:0004808!4.89e-09!9;UBERON:0001277!4.89e-09!9;UBERON:0000485!7.52e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.24e-48,47;UBERON:0000160,9.21e-44,31;UBERON:0000344,5.54e-26,15;UBERON:0001242,2.46e-22,13;UBERON:0001262,2.46e-22,13;UBERON:0004786,2.46e-22,13;UBERON:0001007,1.36e-20,116;UBERON:0001555,1.36e-20,116;UBERON:0007026,1.36e-20,116;UBERON:0004119,4.62e-20,118;UBERON:0000925,4.62e-20,118;UBERON:0006595,4.62e-20,118;UBERON:0004921,2.46e-18,114;UBERON:0004923,1.04e-16,24;UBERON:0003350,3.65e-15,9;UBERON:0004808,3.65e-15,9;UBERON:0001277,3.65e-15,9;UBERON:0000485,4.77e-12,11;UBERON:0002108,1.36e-08,4;UBERON:0000945,3.11e-07,16;UBERON:0010039,3.11e-07,16;UBERON:0000331,4.45e-07,3;UBERON:0002116,4.45e-07,3;UBERON:0001204,4.45e-07,3;UBERON:0001168,4.45e-07,3 | |||
|phase1_expression=0,9.42233600626275,8.18998630901165,13.6108895088074,11.0197060588196,9.56911849897772,13.0823078733494,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0,0,18.3991286212418,15.5998311125676,6.31655160526522,11.1998119001359,10.1271479362368,20.5225293012884,16.6339885641554,22.1730510655305,0,0,0,8.66554859253824,11.470190529736,8.77928231928187,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279972843250725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,4.54843492213368,10.7526452903361,1.54488862144927,0,0,0,0,0,0,0,0.432982082022428,0.506719730950197,0,2.16949371466214,0,0,0,0,0,0.150722640552623,0,0,5.6854842578906,0,0,0,0.220841518460394,0,24.2309289583559,0,0,20.9474785271045,0,0,0,0,0,0,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0.189106080167819,0,0.43839146485515,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0,0,0,0,11.5646574044329,18.2470890997846,0,0.464473343720877,2.31961430379768,1.81515172161008,2.66853652613844,4.94586627892654,17.5575752771469,3.78807595865225,4.52403375840485,3.58121649674071,2.9244613067868,20.6728463990471,14.2651112917298,13.9398891278057,0,0,0,0,0,0,0,0,0,0,0.296452627087149,0.166845105716094,0.196558995113203,0.674586337154561,0,0.241177159752417,0,0.287696137450811,0.810676133875177,0.274561413188081,0,1.11642284300551,0.312037673114561,0.757736633841335,1.61457672169721,0.482443521363367,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.35613120733451,0.162886959353576,0.164970122972535,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.42366414172764,0,0,0,0,0,0,10.4933101186746,0,0,0,0,0,0,0,0,0,0,15.2747298882418,0.316335993581135,2.03319467126849,4.64422965533745,9.61806161666556,11.7915784422936,6.74321731924104,8.01738520535759,9.6849698534091,7.77689839750757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.24182309202693,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0.183843508450014,0.666740183404846,0.206035057238894,0,0.252697211763798,0.25347929989024,0.377252682772152,0.561849044819294,0.256100609619477,0.229741875822453,0,0.347652977834566,0.192909220463705,0.412085900803307,0.294397840268795,1.02860775715625,0,0.715308569841963,0.436039249896986,0.282328141245992,0.592302255241736,0.182927972872773,0.263069711437843,0.135804113845862,0.561142271657738,0.118635018124174,0.492522411877817,0,0.464810523557898,0,0,0.233931608445408,1.50409737833809,0.191288332068843,0.441182838239031,0.927471342481686 | |||
|short_description=p3@Smpd3 | |||
}} | |||
Revision as of 14:39, 14 September 2013
| Short description: | p3@Smpd3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Smpd3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3650 |
| Association with transcript: | -34bp_to_uc009nfx.1_5end |
| EntrezGene: | Smpd3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 3.65e-15 | 9 |
| epithelial cell of alimentary canal | 3.65e-15 | 9 |
| epithelial cell | 5.44e-11 | 25 |
| brush border epithelial cell | 1.01e-10 | 6 |
| gut absorptive cell | 1.01e-10 | 6 |
| enterocyte | 1.01e-10 | 6 |
| columnar/cuboidal epithelial cell | 4.58e-09 | 7 |
| endodermal cell | 1.02e-08 | 20 |
| endo-epithelial cell | 2.53e-08 | 15 |
| Ontology term | p-value | n |
|---|---|---|
| gastrointestinal system | 4.24e-48 | 47 |
| intestine | 9.21e-44 | 31 |
| mucosa | 5.54e-26 | 15 |
| intestinal mucosa | 2.46e-22 | 13 |
| wall of intestine | 2.46e-22 | 13 |
| gastrointestinal system mucosa | 2.46e-22 | 13 |
| digestive system | 1.36e-20 | 116 |
| digestive tract | 1.36e-20 | 116 |
| primitive gut | 1.36e-20 | 116 |
| endoderm-derived structure | 4.62e-20 | 118 |
| endoderm | 4.62e-20 | 118 |
| presumptive endoderm | 4.62e-20 | 118 |
| subdivision of digestive tract | 2.46e-18 | 114 |
| organ component layer | 1.04e-16 | 24 |
| epithelium of mucosa | 3.65e-15 | 9 |
| gastrointestinal system epithelium | 3.65e-15 | 9 |
| intestinal epithelium | 3.65e-15 | 9 |
| simple columnar epithelium | 4.77e-12 | 11 |
| small intestine | 1.36e-08 | 4 |
| stomach | 3.11e-07 | 16 |
| food storage organ | 3.11e-07 | 16 |
| ileal mucosa | 4.45e-07 | 3 |
| ileum | 4.45e-07 | 3 |
| mucosa of small intestine | 4.45e-07 | 3 |
| wall of small intestine | 4.45e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
