FFCP PHASE1:Mm9::chr3:34101597..34101601,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=107|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:34101597..34101601,+|id=chr3:34101597..34101601,+|ontology_enrichment_celltype=CL:0000107!5.23e-13!9;CL:0000540!1.00e-08!33;CL:0000047!1.00e-08!33;CL:0000031!1.00e-08!33;CL:0000404!1.00e-08!33|ontology_enrichment_celltype_v019_2=CL:0000107,3.71e-57,9;CL:0000540,1.67e-26,33;CL:0000047,1.67e-26,33;CL:0000031,1.67e-26,33;CL:0000404,1.67e-26,33;CL:0000393,3.02e-22,39;CL:0000211,3.02e-22,39;CL:0002319,4.60e-20,43;CL:0000221,1.40e-19,44;CL:0000133,1.40e-19,44;CL:0002321,7.98e-12,70;CL:0002608,5.12e-09,3;CL:0000723,9.02e-09,91;CL:0000048,9.02e-09,91;CL:0000034,3.87e-08,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.10e-15!75;UBERON:0001016!5.10e-15!75;UBERON:0001017!6.55e-15!73;UBERON:0005743!6.55e-15!73;UBERON:0002410!5.23e-13!9;UBERON:0000010!8.73e-12!11;UBERON:0004121!4.40e-11!102;UBERON:0000924!4.40e-11!102;UBERON:0006601!4.40e-11!102;UBERON:0002346!1.38e-09!71;UBERON:0003075!1.38e-09!71;UBERON:0007284!1.38e-09!71;UBERON:0001049!3.53e-09!52;UBERON:0005068!3.53e-09!52;UBERON:0006241!3.53e-09!52;UBERON:0007135!3.53e-09!52;UBERON:0003080!8.68e-09!40;UBERON:0003056!9.22e-09!49;UBERON:0000955!2.38e-08!50;UBERON:0006238!2.38e-08!50;UBERON:0000033!2.99e-08!63;UBERON:0002780!3.70e-08!39;UBERON:0001890!3.70e-08!39;UBERON:0006240!3.70e-08!39;UBERON:0002616!1.24e-07!49;UBERON:0002791!5.26e-07!29;UBERON:0003528!5.26e-07!29;UBERON:0001893!5.26e-07!29;UBERON:0002020!5.44e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0002410,3.71e-57,9;UBERON:0000010,1.21e-46,11;UBERON:0000011,1.91e-20,3;UBERON:0010313,6.21e-20,3;UBERON:0002342,6.21e-20,3;UBERON:0002005,6.21e-20,3;UBERON:0005428,6.21e-20,3;UBERON:0005062,6.21e-20,3;UBERON:0000013,8.33e-20,3;UBERON:0001017,1.24e-15,73;UBERON:0001016,3.51e-15,75;UBERON:0004121,1.10e-11,95;UBERON:0000924,1.10e-11,95;UBERON:0006601,1.10e-11,95|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5869729378161,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0.61245399607477,1.24599112323707,1.83843757322004,0,0,0,0.131886287730194,0,0.52091337055676,0,0,0,0.294628585473668,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0,0,0,0,0,0.299581278809645,1.37250180845588,0.628271760564322,0.173824320192276,0.255715457330331,0.20778804455956,0.324482526135515,0,0,0,0,0,0,0,0,0.340182495756639,0.512454881139399,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0.639864751605702,0.232236671860439,0.38660238396628,0.403367049246685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234423373184406,0,0.252470927204373,5.67914794949262,1.95219372148319,3.23135096599198,3.58453196928828,5.79276552614225,4.81230102341015,4.45291771842384,2.33804686329049,2.76701444562566,1.60660658210904,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0.428674070063185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0.627264888043406,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0.343706364687375,0.685082519770642,0,0,0.45032120322422,0.906284817968409,0.51776031175182,0,0.399024873401031,0.341467211508268,0.486213434136588,0.209613162627982,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0,0.192909220463705,0,0.294397840268795,0.342869252385415,0.177475806159338,0,0.145346416632329,0.0941093804153306,0.423073039458382,0.365855945745545,0,0.135804113845862,0,0.237270036248348,0.394017929502254,0,0.154936841185966,0,0.249810577937946,0,0.214871054048298,0,0,0|short_description=p@chr3:34101597..34101601,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=107 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:34101597..34101601,+ | |||
|id=chr3:34101597..34101601,+ | |||
|ontology_enrichment_celltype=CL:0000107!5.23e-13!9;CL:0000540!1.00e-08!33;CL:0000047!1.00e-08!33;CL:0000031!1.00e-08!33;CL:0000404!1.00e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000107,3.71e-57,9;CL:0000540,1.67e-26,33;CL:0000047,1.67e-26,33;CL:0000031,1.67e-26,33;CL:0000404,1.67e-26,33;CL:0000393,3.02e-22,39;CL:0000211,3.02e-22,39;CL:0002319,4.60e-20,43;CL:0000221,1.40e-19,44;CL:0000133,1.40e-19,44;CL:0002321,7.98e-12,70;CL:0002608,5.12e-09,3;CL:0000723,9.02e-09,91;CL:0000048,9.02e-09,91;CL:0000034,3.87e-08,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.10e-15!75;UBERON:0001016!5.10e-15!75;UBERON:0001017!6.55e-15!73;UBERON:0005743!6.55e-15!73;UBERON:0002410!5.23e-13!9;UBERON:0000010!8.73e-12!11;UBERON:0004121!4.40e-11!102;UBERON:0000924!4.40e-11!102;UBERON:0006601!4.40e-11!102;UBERON:0002346!1.38e-09!71;UBERON:0003075!1.38e-09!71;UBERON:0007284!1.38e-09!71;UBERON:0001049!3.53e-09!52;UBERON:0005068!3.53e-09!52;UBERON:0006241!3.53e-09!52;UBERON:0007135!3.53e-09!52;UBERON:0003080!8.68e-09!40;UBERON:0003056!9.22e-09!49;UBERON:0000955!2.38e-08!50;UBERON:0006238!2.38e-08!50;UBERON:0000033!2.99e-08!63;UBERON:0002780!3.70e-08!39;UBERON:0001890!3.70e-08!39;UBERON:0006240!3.70e-08!39;UBERON:0002616!1.24e-07!49;UBERON:0002791!5.26e-07!29;UBERON:0003528!5.26e-07!29;UBERON:0001893!5.26e-07!29;UBERON:0002020!5.44e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002410,3.71e-57,9;UBERON:0000010,1.21e-46,11;UBERON:0000011,1.91e-20,3;UBERON:0010313,6.21e-20,3;UBERON:0002342,6.21e-20,3;UBERON:0002005,6.21e-20,3;UBERON:0005428,6.21e-20,3;UBERON:0005062,6.21e-20,3;UBERON:0000013,8.33e-20,3;UBERON:0001017,1.24e-15,73;UBERON:0001016,3.51e-15,75;UBERON:0004121,1.10e-11,95;UBERON:0000924,1.10e-11,95;UBERON:0006601,1.10e-11,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0,0,0,0,0,0.17008658030214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5869729378161,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0.61245399607477,1.24599112323707,1.83843757322004,0,0,0,0.131886287730194,0,0.52091337055676,0,0,0,0.294628585473668,0.142371680799103,0,0.075726193333184,0,0,0,0,0,0,0,0,0.170430322578058,0,0,0.281686839553361,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0,0,0,0,0,0.299581278809645,1.37250180845588,0.628271760564322,0.173824320192276,0.255715457330331,0.20778804455956,0.324482526135515,0,0,0,0,0,0,0,0,0.340182495756639,0.512454881139399,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0.639864751605702,0.232236671860439,0.38660238396628,0.403367049246685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234423373184406,0,0.252470927204373,5.67914794949262,1.95219372148319,3.23135096599198,3.58453196928828,5.79276552614225,4.81230102341015,4.45291771842384,2.33804686329049,2.76701444562566,1.60660658210904,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36012218806262,0.129358683782755,0.428674070063185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0.627264888043406,0,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0,0.343706364687375,0.685082519770642,0,0,0.45032120322422,0.906284817968409,0.51776031175182,0,0.399024873401031,0.341467211508268,0.486213434136588,0.209613162627982,0,0,0.206035057238894,0,0,0,0,0.0936415074698824,0.0640251524048693,0.114870937911227,0,0,0.192909220463705,0,0.294397840268795,0.342869252385415,0.177475806159338,0,0.145346416632329,0.0941093804153306,0.423073039458382,0.365855945745545,0,0.135804113845862,0,0.237270036248348,0.394017929502254,0,0.154936841185966,0,0.249810577937946,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr3:34101597..34101601,+ | |||
}} |
Revision as of 02:08, 14 September 2013
Short description: | p@chr3:34101597..34101601, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:34101597..34101601, + |
Coexpression cluster: | MCL_coexpression_mm9:107 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
autonomic neuron | 3.71e-57 | 9 |
neuron | 1.67e-26 | 33 |
neuronal stem cell | 1.67e-26 | 33 |
neuroblast | 1.67e-26 | 33 |
electrically signaling cell | 1.67e-26 | 33 |
electrically responsive cell | 3.02e-22 | 39 |
electrically active cell | 3.02e-22 | 39 |
neural cell | 4.60e-20 | 43 |
ectodermal cell | 1.40e-19 | 44 |
neurectodermal cell | 1.40e-19 | 44 |
embryonic cell | 7.98e-12 | 70 |
hippocampal neuron | 5.12e-09 | 3 |
somatic stem cell | 9.02e-09 | 91 |
multi fate stem cell | 9.02e-09 | 91 |
stem cell | 3.87e-08 | 97 |
Ontology term | p-value | n |
---|---|---|
autonomic nervous system | 3.71e-57 | 9 |
peripheral nervous system | 1.21e-46 | 11 |
parasympathetic nervous system | 1.91e-20 | 3 |
neural crest-derived structure | 6.21e-20 | 3 |
neural crest | 6.21e-20 | 3 |
enteric nervous system | 6.21e-20 | 3 |
vagal neural crest | 6.21e-20 | 3 |
neural fold | 6.21e-20 | 3 |
sympathetic nervous system | 8.33e-20 | 3 |
central nervous system | 1.24e-15 | 73 |
nervous system | 3.51e-15 | 75 |
ectoderm-derived structure | 1.10e-11 | 95 |
ectoderm | 1.10e-11 | 95 |
presumptive ectoderm | 1.10e-11 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.