FFCP PHASE1:Mm9::chr10:7581888..7581901,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:7581888..7581901,+|id=chr10:7581888..7581901,+|ontology_enrichment_celltype=CL:0002563!3.97e-25!9;CL:0002251!3.97e-25!9;CL:0000066!2.94e-16!25;CL:0000239!8.40e-16!6;CL:0000677!8.40e-16!6;CL:0000212!8.40e-16!6;CL:0000584!8.40e-16!6;CL:0002076!1.27e-14!15;CL:0000075!1.64e-13!7;CL:0000473!1.62e-12!3;CL:0000627!1.62e-12!3;CL:0000682!1.62e-12!3;CL:0002250!5.32e-11!3;CL:0000223!1.12e-10!20|ontology_enrichment_celltype_v019_2=CL:0000682,9.43e-22,3;CL:0002563,4.84e-19,9;CL:0002251,4.84e-19,9;CL:0000239,7.05e-19,6;CL:0000677,7.05e-19,6;CL:0000584,7.05e-19,6;CL:0000066,4.58e-17,25;CL:0000075,3.14e-16,7;CL:0002076,1.95e-11,15;CL:0000473,1.15e-09,7;CL:0000223,1.44e-08,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!4.52e-45!15;UBERON:0001242!4.31e-38!13;UBERON:0000060!4.31e-38!13;UBERON:0001262!4.31e-38!13;UBERON:0004786!4.31e-38!13;UBERON:0004923!3.36e-27!24;UBERON:0003350!3.97e-25!9;UBERON:0004808!3.97e-25!9;UBERON:0001277!3.97e-25!9;UBERON:0000485!2.35e-20!11;UBERON:0000160!1.59e-18!43;UBERON:0005409!1.75e-14!59;UBERON:0000331!3.02e-11!3;UBERON:0002116!3.02e-11!3;UBERON:0001204!3.02e-11!3;UBERON:0001168!3.02e-11!3;UBERON:0001962!1.95e-08!2;UBERON:0001961!1.95e-08!2;UBERON:0001744!1.95e-08!2;UBERON:0001007!1.34e-07!128;UBERON:0001555!1.34e-07!128;UBERON:0007026!1.34e-07!128;UBERON:0004119!2.01e-07!130;UBERON:0000925!2.01e-07!130;UBERON:0006595!2.01e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.55e-28,15;UBERON:0003350,4.84e-19,9;UBERON:0004808,4.84e-19,9;UBERON:0001277,4.84e-19,9;UBERON:0001242,1.22e-18,13;UBERON:0001262,1.22e-18,13;UBERON:0004786,1.22e-18,13;UBERON:0004923,2.12e-17,24;UBERON:0000485,1.37e-15,11;UBERON:0001962,3.13e-14,2;UBERON:0001961,3.13e-14,2;UBERON:0001744,3.13e-14,2;UBERON:0000160,2.82e-13,31;UBERON:0002465,8.39e-10,3;UBERON:0005409,1.62e-08,47;UBERON:0003199,7.68e-08,1|phase1_expression=0,3.83872948403297,7.27998783023258,0.30246421130683,0,4.53274034162102,4.67225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19984845586813,2.06468352960453,4.59385571292016,5.59990595006797,4.74036711908956,0.190023419456374,0.756090389279792,3.10422714917427,0,0,0,0.577703239502549,0.166234645358492,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0.898819408654221,0,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.388844919875379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0|short_description=p@chr10:7581888..7581901,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:7581888..7581901,+ | |||
|id=chr10:7581888..7581901,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.97e-25!9;CL:0002251!3.97e-25!9;CL:0000066!2.94e-16!25;CL:0000239!8.40e-16!6;CL:0000677!8.40e-16!6;CL:0000212!8.40e-16!6;CL:0000584!8.40e-16!6;CL:0002076!1.27e-14!15;CL:0000075!1.64e-13!7;CL:0000473!1.62e-12!3;CL:0000627!1.62e-12!3;CL:0000682!1.62e-12!3;CL:0002250!5.32e-11!3;CL:0000223!1.12e-10!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,9.43e-22,3;CL:0002563,4.84e-19,9;CL:0002251,4.84e-19,9;CL:0000239,7.05e-19,6;CL:0000677,7.05e-19,6;CL:0000584,7.05e-19,6;CL:0000066,4.58e-17,25;CL:0000075,3.14e-16,7;CL:0002076,1.95e-11,15;CL:0000473,1.15e-09,7;CL:0000223,1.44e-08,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!4.52e-45!15;UBERON:0001242!4.31e-38!13;UBERON:0000060!4.31e-38!13;UBERON:0001262!4.31e-38!13;UBERON:0004786!4.31e-38!13;UBERON:0004923!3.36e-27!24;UBERON:0003350!3.97e-25!9;UBERON:0004808!3.97e-25!9;UBERON:0001277!3.97e-25!9;UBERON:0000485!2.35e-20!11;UBERON:0000160!1.59e-18!43;UBERON:0005409!1.75e-14!59;UBERON:0000331!3.02e-11!3;UBERON:0002116!3.02e-11!3;UBERON:0001204!3.02e-11!3;UBERON:0001168!3.02e-11!3;UBERON:0001962!1.95e-08!2;UBERON:0001961!1.95e-08!2;UBERON:0001744!1.95e-08!2;UBERON:0001007!1.34e-07!128;UBERON:0001555!1.34e-07!128;UBERON:0007026!1.34e-07!128;UBERON:0004119!2.01e-07!130;UBERON:0000925!2.01e-07!130;UBERON:0006595!2.01e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.55e-28,15;UBERON:0003350,4.84e-19,9;UBERON:0004808,4.84e-19,9;UBERON:0001277,4.84e-19,9;UBERON:0001242,1.22e-18,13;UBERON:0001262,1.22e-18,13;UBERON:0004786,1.22e-18,13;UBERON:0004923,2.12e-17,24;UBERON:0000485,1.37e-15,11;UBERON:0001962,3.13e-14,2;UBERON:0001961,3.13e-14,2;UBERON:0001744,3.13e-14,2;UBERON:0000160,2.82e-13,31;UBERON:0002465,8.39e-10,3;UBERON:0005409,1.62e-08,47;UBERON:0003199,7.68e-08,1 | |||
|phase1_expression=0,3.83872948403297,7.27998783023258,0.30246421130683,0,4.53274034162102,4.67225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19984845586813,2.06468352960453,4.59385571292016,5.59990595006797,4.74036711908956,0.190023419456374,0.756090389279792,3.10422714917427,0,0,0,0.577703239502549,0.166234645358492,1.02084678131185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0.898819408654221,0,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.388844919875379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974578807397524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr10:7581888..7581901,+ | |||
}} |
Revision as of 17:24, 12 September 2013
Short description: | p@chr10:7581888..7581901, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:7581888..7581901, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 9.43e-22 | 3 |
intestinal epithelial cell | 4.84e-19 | 9 |
epithelial cell of alimentary canal | 4.84e-19 | 9 |
brush border epithelial cell | 7.05e-19 | 6 |
gut absorptive cell | 7.05e-19 | 6 |
enterocyte | 7.05e-19 | 6 |
epithelial cell | 4.58e-17 | 25 |
columnar/cuboidal epithelial cell | 3.14e-16 | 7 |
endo-epithelial cell | 1.95e-11 | 15 |
defensive cell | 1.15e-09 | 7 |
endodermal cell | 1.44e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.55e-28 | 15 |
epithelium of mucosa | 4.84e-19 | 9 |
gastrointestinal system epithelium | 4.84e-19 | 9 |
intestinal epithelium | 4.84e-19 | 9 |
intestinal mucosa | 1.22e-18 | 13 |
wall of intestine | 1.22e-18 | 13 |
gastrointestinal system mucosa | 1.22e-18 | 13 |
organ component layer | 2.12e-17 | 24 |
simple columnar epithelium | 1.37e-15 | 11 |
gut-associated lymphoid tissue | 3.13e-14 | 2 |
mucosa-associated lymphoid tissue | 3.13e-14 | 2 |
lymphoid tissue | 3.13e-14 | 2 |
intestine | 2.82e-13 | 31 |
lymphoid system | 8.39e-10 | 3 |
gastrointestinal system | 1.62e-08 | 47 |
egg chamber | 7.68e-08 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.