FFCP PHASE1:Mm9::chr6:78416874..78416888,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=219|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78416874..78416888,-|id=chr6:78416874..78416888,-|ontology_enrichment_celltype=CL:0000239!2.68e-18!6;CL:0000677!2.68e-18!6;CL:0000212!2.68e-18!6;CL:0000584!2.68e-18!6;CL:0002563!6.90e-16!9;CL:0002251!6.90e-16!9;CL:0000075!1.37e-15!7;CL:0000066!6.55e-13!25;CL:0002076!8.34e-12!15;CL:0000473!2.04e-10!3;CL:0000627!2.04e-10!3;CL:0000682!2.04e-10!3;CL:0000223!1.57e-08!20|ontology_enrichment_celltype_v019_2=CL:0000239,3.44e-29,6;CL:0000677,3.44e-29,6;CL:0000584,3.44e-29,6;CL:0000075,5.57e-25,7;CL:0002563,2.33e-19,9;CL:0002251,2.33e-19,9;CL:0000066,1.71e-18,25;CL:0000682,3.66e-16,3;CL:0002076,2.77e-15,15;CL:0000223,2.68e-11,20;CL:0000473,3.32e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.28e-32!15;UBERON:0001242!9.71e-27!13;UBERON:0000060!9.71e-27!13;UBERON:0001262!9.71e-27!13;UBERON:0004786!9.71e-27!13;UBERON:0004923!3.47e-19!24;UBERON:0003350!6.90e-16!9;UBERON:0004808!6.90e-16!9;UBERON:0001277!6.90e-16!9;UBERON:0000160!1.13e-14!43;UBERON:0000485!8.08e-13!11;UBERON:0000331!2.04e-10!3;UBERON:0002116!2.04e-10!3;UBERON:0001204!2.04e-10!3;UBERON:0001168!2.04e-10!3;UBERON:0005409!9.29e-10!59;UBERON:0001007!1.85e-08!128;UBERON:0001555!1.85e-08!128;UBERON:0007026!1.85e-08!128;UBERON:0004119!2.98e-08!130;UBERON:0000925!2.98e-08!130;UBERON:0006595!2.98e-08!130;UBERON:0001962!3.05e-07!2;UBERON:0001961!3.05e-07!2;UBERON:0001744!3.05e-07!2;UBERON:0004921!9.51e-07!126;UBERON:0004185!9.51e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000344,9.33e-39,15;UBERON:0001242,4.75e-30,13;UBERON:0001262,4.75e-30,13;UBERON:0004786,4.75e-30,13;UBERON:0004923,1.14e-23,24;UBERON:0003350,2.33e-19,9;UBERON:0004808,2.33e-19,9;UBERON:0001277,2.33e-19,9;UBERON:0000160,8.31e-18,31;UBERON:0000331,3.66e-16,3;UBERON:0002116,3.66e-16,3;UBERON:0001204,3.66e-16,3;UBERON:0001168,3.66e-16,3;UBERON:0000485,8.92e-16,11;UBERON:0002108,2.93e-12,4;UBERON:0005409,3.33e-11,47;UBERON:0001962,6.17e-11,2;UBERON:0001961,6.17e-11,2;UBERON:0001744,6.17e-11,2;UBERON:0002465,1.42e-07,3|phase1_expression=0,20.5895490507223,17.2899710968024,4.23449895829562,3.50627010962443,4.36486106970913,9.57811826441655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.63959083084396,10.782236210157,14.9300310669905,15.5074318617267,28.2267314818515,23.5629040125904,8.56902441183765,47.0068682589246,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01104889002957,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,6.34681359992506,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0.864552199498777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0.491589944147214,0,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05418608574999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:78416874..78416888,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=219 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78416874..78416888,- | |||
|id=chr6:78416874..78416888,- | |||
|ontology_enrichment_celltype=CL:0000239!2.68e-18!6;CL:0000677!2.68e-18!6;CL:0000212!2.68e-18!6;CL:0000584!2.68e-18!6;CL:0002563!6.90e-16!9;CL:0002251!6.90e-16!9;CL:0000075!1.37e-15!7;CL:0000066!6.55e-13!25;CL:0002076!8.34e-12!15;CL:0000473!2.04e-10!3;CL:0000627!2.04e-10!3;CL:0000682!2.04e-10!3;CL:0000223!1.57e-08!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.44e-29,6;CL:0000677,3.44e-29,6;CL:0000584,3.44e-29,6;CL:0000075,5.57e-25,7;CL:0002563,2.33e-19,9;CL:0002251,2.33e-19,9;CL:0000066,1.71e-18,25;CL:0000682,3.66e-16,3;CL:0002076,2.77e-15,15;CL:0000223,2.68e-11,20;CL:0000473,3.32e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.28e-32!15;UBERON:0001242!9.71e-27!13;UBERON:0000060!9.71e-27!13;UBERON:0001262!9.71e-27!13;UBERON:0004786!9.71e-27!13;UBERON:0004923!3.47e-19!24;UBERON:0003350!6.90e-16!9;UBERON:0004808!6.90e-16!9;UBERON:0001277!6.90e-16!9;UBERON:0000160!1.13e-14!43;UBERON:0000485!8.08e-13!11;UBERON:0000331!2.04e-10!3;UBERON:0002116!2.04e-10!3;UBERON:0001204!2.04e-10!3;UBERON:0001168!2.04e-10!3;UBERON:0005409!9.29e-10!59;UBERON:0001007!1.85e-08!128;UBERON:0001555!1.85e-08!128;UBERON:0007026!1.85e-08!128;UBERON:0004119!2.98e-08!130;UBERON:0000925!2.98e-08!130;UBERON:0006595!2.98e-08!130;UBERON:0001962!3.05e-07!2;UBERON:0001961!3.05e-07!2;UBERON:0001744!3.05e-07!2;UBERON:0004921!9.51e-07!126;UBERON:0004185!9.51e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,9.33e-39,15;UBERON:0001242,4.75e-30,13;UBERON:0001262,4.75e-30,13;UBERON:0004786,4.75e-30,13;UBERON:0004923,1.14e-23,24;UBERON:0003350,2.33e-19,9;UBERON:0004808,2.33e-19,9;UBERON:0001277,2.33e-19,9;UBERON:0000160,8.31e-18,31;UBERON:0000331,3.66e-16,3;UBERON:0002116,3.66e-16,3;UBERON:0001204,3.66e-16,3;UBERON:0001168,3.66e-16,3;UBERON:0000485,8.92e-16,11;UBERON:0002108,2.93e-12,4;UBERON:0005409,3.33e-11,47;UBERON:0001962,6.17e-11,2;UBERON:0001961,6.17e-11,2;UBERON:0001744,6.17e-11,2;UBERON:0002465,1.42e-07,3 | |||
|phase1_expression=0,20.5895490507223,17.2899710968024,4.23449895829562,3.50627010962443,4.36486106970913,9.57811826441655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.63959083084396,10.782236210157,14.9300310669905,15.5074318617267,28.2267314818515,23.5629040125904,8.56902441183765,47.0068682589246,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01104889002957,0.68510327831436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210441855886474,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,6.34681359992506,0,0,0,0,0,0,0.474529061544512,0,0,0,0,0,0.864552199498777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0.157635144106191,0,0,0.491589944147214,0,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05418608574999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0,0,0,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:78416874..78416888,- | |||
}} |
Revision as of 10:40, 14 September 2013
Short description: | p@chr6:78416874..78416888, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78416874..78416888, - |
Coexpression cluster: | MCL_coexpression_mm9:219 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.44e-29 | 6 |
gut absorptive cell | 3.44e-29 | 6 |
enterocyte | 3.44e-29 | 6 |
columnar/cuboidal epithelial cell | 5.57e-25 | 7 |
intestinal epithelial cell | 2.33e-19 | 9 |
epithelial cell of alimentary canal | 2.33e-19 | 9 |
epithelial cell | 1.71e-18 | 25 |
M cell of gut | 3.66e-16 | 3 |
endo-epithelial cell | 2.77e-15 | 15 |
endodermal cell | 2.68e-11 | 20 |
defensive cell | 3.32e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 9.33e-39 | 15 |
intestinal mucosa | 4.75e-30 | 13 |
wall of intestine | 4.75e-30 | 13 |
gastrointestinal system mucosa | 4.75e-30 | 13 |
organ component layer | 1.14e-23 | 24 |
epithelium of mucosa | 2.33e-19 | 9 |
gastrointestinal system epithelium | 2.33e-19 | 9 |
intestinal epithelium | 2.33e-19 | 9 |
intestine | 8.31e-18 | 31 |
ileal mucosa | 3.66e-16 | 3 |
ileum | 3.66e-16 | 3 |
mucosa of small intestine | 3.66e-16 | 3 |
wall of small intestine | 3.66e-16 | 3 |
simple columnar epithelium | 8.92e-16 | 11 |
small intestine | 2.93e-12 | 4 |
gastrointestinal system | 3.33e-11 | 47 |
gut-associated lymphoid tissue | 6.17e-11 | 2 |
mucosa-associated lymphoid tissue | 6.17e-11 | 2 |
lymphoid tissue | 6.17e-11 | 2 |
lymphoid system | 1.42e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.