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MCL coexpression mm9:217: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0000160!5.27e-33!31;UBERON:0005409!3.31e-30!47;UBERON:0000344!1.35e-13!15;UBERON:0001242!5.63e-11!13;UBERON:0000060!5.63e-11!13;UBERON:0001262!5.63e-11!13;UBERON:0004786!5.63e-11!13;UBERON:0004923!9.42e-09!24;UBERON:0001007!2.08e-08!116;UBERON:0001555!2.08e-08!116;UBERON:0007026!2.08e-08!116;UBERON:0004119!4.08e-08!118;UBERON:0000925!4.08e-08!118;UBERON:0006595!4.08e-08!118;UBERON:0003350!4.46e-08!9;UBERON:0004808!4.46e-08!9;UBERON:0001277!4.46e-08!9;UBERON:0004921!3.42e-07!114
|ontology_enrichment_uberon=UBERON:0000160!5.27e-33!31;UBERON:0005409!3.31e-30!47;UBERON:0000344!1.35e-13!15;UBERON:0001242!5.63e-11!13;UBERON:0000060!5.63e-11!13;UBERON:0001262!5.63e-11!13;UBERON:0004786!5.63e-11!13;UBERON:0004923!9.42e-09!24;UBERON:0001007!2.08e-08!116;UBERON:0001555!2.08e-08!116;UBERON:0007026!2.08e-08!116;UBERON:0004119!4.08e-08!118;UBERON:0000925!4.08e-08!118;UBERON:0006595!4.08e-08!118;UBERON:0003350!4.46e-08!9;UBERON:0004808!4.46e-08!9;UBERON:0001277!4.46e-08!9;UBERON:0004921!3.42e-07!114
|tfbs_overrepresentation_for_novel_motifs=0.0337853,0.00101943,0.113995,1.08064,0.249064,0.18995,0.0866288,0.31767,0.348171,0.140924,0.0681347,0.58397,0.00168426,0.0921882,0.485502,0,0.199777,0.639733,0.427442,0.328799,0.417619,0.0585376,0.0917729,0.429265,0.287488,0.342834,0.140658,0.0583037,0.0141199,0.36937,0.197064,0.268728,0.403511,0.478055,0.010156,0.0416882,0.00622713,0.0797829,0.507479,0.0169371,0.241128,0.202487,1.14526,1.42523,0.203251,0.1645,0.151073,0.0641975,2.07849,0.17895,0.188647,0.118842,0.678048,0.37598,1.01159,0.0955072,0.0739686,0.0759108,0.124815,0.0945544,0.254508,0.123779,0.586229,0.181599,0.330877,0.207411,0.503044,0.81757,0.251228,0.681742,0.244924,0.336585,0.000271306,0.417048,0.00069509,0.0965617,0.319176,0.444233,0.242532,0.427988,0.521756,0.211086,0.389282,1.19115,0.325875,0.000620214,1.44241,0.142392,0.153906,0.971002,0.563419,0.329674,0.761702,0.45197,0.0746676,0.640098,0.0912688,0.279988,0.151219,0.0068262,1.52571,0.268528,0.36221,0.553557,0.188358,0.0549469,1.20455,0.224798,0.231363,0.0876002,0.306923,0.363613,0.0901221,0.0701947,0.569603,0.416448,1.88148e-05,0.047388,0.200617,0.204936,1.08041,0.504314,0.106172,0.442945,0.617553,0.245094,0.0903068,0.273057,0.501748,0.461172,0.9213,0.381713,1.19944,0.102,0.588644,3.44347,0.604363,0.782693,0.54549,1.3282,0.940622,0.507078,0.112176,0.276262,1.63791,0.0552627,0.464996,1.28935,0.337991,0.0430736,0.0346456,1.06175e-05,0.377227,0.065019,1.12822,0.443629,0.379815,0.308817,2.81517,0.333317,0.553783,1.56397,0.245404,0.127937,1.02781,0.664591,0.588314,0.275991,0.169415
|tfbs_overrepresentation_for_novel_motifs=0.0337853,0.00101943,0.113995,1.08064,0.249064,0.18995,0.0866288,0.31767,0.348171,0.140924,0.0681347,0.58397,0.00168426,0.0921882,0.485502,0,0.199777,0.639733,0.427442,0.328799,0.417619,0.0585376,0.0917729,0.429265,0.287488,0.342834,0.140658,0.0583037,0.0141199,0.36937,0.197064,0.268728,0.403511,0.478055,0.010156,0.0416882,0.00622713,0.0797829,0.507479,0.0169371,0.241128,0.202487,1.14526,1.42523,0.203251,0.1645,0.151073,0.0641975,2.07849,0.17895,0.188647,0.118842,0.678048,0.37598,1.01159,0.0955072,0.0739686,0.0759108,0.124815,0.0945544,0.254508,0.123779,0.586229,0.181599,0.330877,0.207411,0.503044,0.81757,0.251228,0.681742,0.244924,0.336585,0.000271306,0.417048,0.00069509,0.0965617,0.319176,0.444233,0.242532,0.427988,0.521756,0.211086,0.389282,1.19115,0.325875,0.000620214,1.44241,0.142392,0.153906,0.971002,0.563419,0.329674,0.761702,0.45197,0.0746676,0.640098,0.0912688,0.279988,0.151219,0.0068262,1.52571,0.268528,0.36221,0.553557,0.188358,0.0549469,1.20455,0.224798,0.231363,0.0876002,0.306923,0.363613,0.0901221,0.0701947,0.569603,0.416448,1.88148e-05,0.047388,0.200617,0.204936,1.08041,0.504314,0.106172,0.442945,0.617553,0.245094,0.0903068,0.273057,0.501748,0.461172,0.9213,0.381713,1.19944,0.102,0.588644,3.44347,0.604363,0.782693,0.54549,1.3282,0.940622,0.507078,0.112176,0.276262,1.63791,0.0552627,0.464996,1.28935,0.337991,0.0430736,0.0346456,1.06175e-05,0.377227,0.065019,1.12822,0.443629,0.379815,0.308817,2.81517,0.333317,0.553783,1.56397,0.245404,0.127937,1.02781,0.664591,0.588314,0.275991,0.169415
|tfbs_overrepresentation_jaspar=MA0003.1;2.48439e-05,MA0004.1;0.0463278,MA0006.1;0.00955452,MA0007.1;0.36842,MA0009.1;0.28789,MA0014.1;9.66333e-06,MA0017.1;0.556989,MA0019.1;0.165823,MA0024.1;0.256408,MA0025.1;1.19128,MA0027.1;1.82121,MA0028.1;0.0108633,MA0029.1;0.241245,MA0030.1;0.245792,MA0031.1;0.630961,MA0038.1;0.105238,MA0040.1;0.29711,MA0041.1;2.55345,MA0042.1;1.08866,MA0043.1;0.361422,MA0046.1;0.314603,MA0048.1;0.179538,MA0050.1;1.73211,MA0051.1;0.354431,MA0052.1;0.818766,MA0055.1;2.0977,MA0056.1;0,MA0057.1;0.0162903,MA0058.1;0.0213244,MA0059.1;0.102551,MA0060.1;0.248105,MA0061.1;0.00471153,MA0063.1;0,MA0066.1;0.0999207,MA0067.1;0.568484,MA0068.1;0.720463,MA0069.1;0.303349,MA0070.1;0.29615,MA0071.1;1.23683,MA0072.1;0.7889,MA0073.1;0.522174,MA0074.1;0.283849,MA0076.1;0.0161593,MA0077.1;0.752964,MA0078.1;0.126717,MA0081.1;0.12094,MA0083.1;0.360799,MA0084.1;0.868194,MA0087.1;0.32742,MA0088.1;0.112068,MA0089.1;0,MA0090.1;0.143477,MA0091.1;0.421301,MA0092.1;0.14376,MA0093.1;0.0119855,MA0095.1;0,MA0098.1;0,MA0100.1;0.0784991,MA0101.1;0.109484,MA0103.1;0.180657,MA0105.1;0.00429974,MA0106.1;0.130893,MA0107.1;0.172402,MA0108.2;0.179719,MA0109.1;0,MA0111.1;0.359123,MA0113.1;0.116032,MA0114.1;0.510981,MA0115.1;0.9538,MA0116.1;0.0480973,MA0117.1;0.33849,MA0119.1;0.26679,MA0122.1;0.353887,MA0124.1;0.522168,MA0125.1;0.459209,MA0130.1;0,MA0131.1;0.163115,MA0132.1;0,MA0133.1;0,MA0135.1;0.390343,MA0136.1;1.06486,MA0139.1;0.0895555,MA0140.1;0.269842,MA0141.1;0.660564,MA0142.1;1.14485,MA0143.1;1.27993,MA0144.1;0.522773,MA0145.1;0.0176945,MA0146.1;0.00805085,MA0147.1;0.0057423,MA0148.1;0.0516927,MA0149.1;0.274777,MA0062.2;0.018869,MA0035.2;0.978521,MA0039.2;0.00938379,MA0138.2;0.158423,MA0002.2;0.698114,MA0137.2;0.65048,MA0104.2;0.00218821,MA0047.2;0.104862,MA0112.2;0.318815,MA0065.2;0.0403502,MA0150.1;0.161196,MA0151.1;0,MA0152.1;0.696832,MA0153.1;1.04185,MA0154.1;0.0205059,MA0155.1;0.0568556,MA0156.1;0.923041,MA0157.1;0.191171,MA0158.1;0,MA0159.1;0.220195,MA0160.1;0.433091,MA0161.1;0,MA0162.1;0.00030983,MA0163.1;0.000669928,MA0164.1;0.638816,MA0080.2;0.575326,MA0018.2;0.0971053,MA0099.2;0.154738,MA0079.2;0,MA0102.2;0.917775,MA0258.1;0.152721,MA0259.1;0.182728,MA0442.1;0
}}
}}

Revision as of 11:22, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:24533549..24533553,-p@chr10:24533549..24533553
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Mm9::chr10:24548511..24548514,-p@chr10:24548511..24548514
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Mm9::chr11:71016353..71016387,-p@chr11:71016353..71016387
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Mm9::chr11:99294870..99294876,-p@chr11:99294870..99294876
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Mm9::chr12:104689302..104689342,+p@chr12:104689302..104689342
+
Mm9::chr12:37968255..37968270,+p8@Agmo
Mm9::chr13:54831604..54831607,+p@chr13:54831604..54831607
+
Mm9::chr13:54833079..54833089,+p@chr13:54833079..54833089
+
Mm9::chr13:54833136..54833151,+p@chr13:54833136..54833151
+
Mm9::chr13:54833390..54833414,+p@chr13:54833390..54833414
+
Mm9::chr13:96295240..96295247,-p3@F2rl1
Mm9::chr15:84505618..84505629,-p@chr15:84505618..84505629
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Mm9::chr16:21855200..21855215,+p@chr16:21855200..21855215
+
Mm9::chr17:34634313..34634343,-p1@Btnl5
Mm9::chr17:34655584..34655617,-p@chr17:34655584..34655617
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Mm9::chr17:35479244..35479275,+p1@H2-Q2
Mm9::chr17:36221177..36221200,-p1@H2-Bl
Mm9::chr17:44309492..44309496,+p@chr17:44309492..44309496
+
Mm9::chr17:87663567..87663578,-p@chr17:87663567..87663578
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Mm9::chr17:88047682..88047685,+p@chr17:88047682..88047685
+
Mm9::chr1:130224888..130224903,-p1@Lct
Mm9::chr1:88995134..88995174,-p@chr1:88995134..88995174
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Mm9::chr1:95756423..95756443,+p@chr1:95756423..95756443
+
Mm9::chr2:164349163..164349184,+p@chr2:164349163..164349184
+
Mm9::chr4:133154680..133154703,-p@chr4:133154680..133154703
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Mm9::chr4:133154712..133154745,-p@chr4:133154712..133154745
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Mm9::chr5:100808176..100808181,-p@chr5:100808176..100808181
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Mm9::chr5:100993749..100993752,-p@chr5:100993749..100993752
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Mm9::chr5:101079560..101079572,+p@chr5:101079560..101079572
+
Mm9::chr5:137395097..137395108,+p3@4933404O12Rik
Mm9::chr5:138339183..138339188,-p@chr5:138339183..138339188
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Mm9::chr6:137435738..137435742,-p@chr6:137435738..137435742
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Mm9::chr7:105266265..105266276,-p@chr7:105266265..105266276
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Mm9::chr7:28856249..28856261,+p1@Fcgbp
Mm9::chr8:23276885..23276907,-p1@Nek3
Mm9::chr8:67621636..67621639,-p@chr8:67621636..67621639
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Mm9::chr8:67624984..67624997,-p@chr8:67624984..67624997
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Mm9::chr9:34861325..34861329,-p@chr9:34861325..34861329
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Mm9::chr9:34861687..34861716,-p@chr9:34861687..34861716
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Mm9::chr9:95719829..95719832,-p@chr9:95719829..95719832
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.12.48439e-05
MA0004.10.0463278
MA0006.10.00955452
MA0007.10.36842
MA0009.10.28789
MA0014.19.66333e-06
MA0017.10.556989
MA0019.10.165823
MA0024.10.256408
MA0025.11.19128
MA0027.11.82121
MA0028.10.0108633
MA0029.10.241245
MA0030.10.245792
MA0031.10.630961
MA0038.10.105238
MA0040.10.29711
MA0041.12.55345
MA0042.11.08866
MA0043.10.361422
MA0046.10.314603
MA0048.10.179538
MA0050.11.73211
MA0051.10.354431
MA0052.10.818766
MA0055.12.0977
MA0056.10
MA0057.10.0162903
MA0058.10.0213244
MA0059.10.102551
MA0060.10.248105
MA0061.10.00471153
MA0063.10
MA0066.10.0999207
MA0067.10.568484
MA0068.10.720463
MA0069.10.303349
MA0070.10.29615
MA0071.11.23683
MA0072.10.7889
MA0073.10.522174
MA0074.10.283849
MA0076.10.0161593
MA0077.10.752964
MA0078.10.126717
MA0081.10.12094
MA0083.10.360799
MA0084.10.868194
MA0087.10.32742
MA0088.10.112068
MA0089.10
MA0090.10.143477
MA0091.10.421301
MA0092.10.14376
MA0093.10.0119855
MA0095.10
MA0098.10
MA0100.10.0784991
MA0101.10.109484
MA0103.10.180657
MA0105.10.00429974
MA0106.10.130893
MA0107.10.172402
MA0108.20.179719
MA0109.10
MA0111.10.359123
MA0113.10.116032
MA0114.10.510981
MA0115.10.9538
MA0116.10.0480973
MA0117.10.33849
MA0119.10.26679
MA0122.10.353887
MA0124.10.522168
MA0125.10.459209
MA0130.10
MA0131.10.163115
MA0132.10
MA0133.10
MA0135.10.390343
MA0136.11.06486
MA0139.10.0895555
MA0140.10.269842
MA0141.10.660564
MA0142.11.14485
MA0143.11.27993
MA0144.10.522773
MA0145.10.0176945
MA0146.10.00805085
MA0147.10.0057423
MA0148.10.0516927
MA0149.10.274777
MA0062.20.018869
MA0035.20.978521
MA0039.20.00938379
MA0138.20.158423
MA0002.20.698114
MA0137.20.65048
MA0104.20.00218821
MA0047.20.104862
MA0112.20.318815
MA0065.20.0403502
MA0150.10.161196
MA0151.10
MA0152.10.696832
MA0153.11.04185
MA0154.10.0205059
MA0155.10.0568556
MA0156.10.923041
MA0157.10.191171
MA0158.10
MA0159.10.220195
MA0160.10.433091
MA0161.10
MA0162.10.00030983
MA0163.10.000669928
MA0164.10.638816
MA0080.20.575326
MA0018.20.0971053
MA0099.20.154738
MA0079.20
MA0102.20.917775
MA0258.10.152721
MA0259.10.182728
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:217&oldid=2573612"