Personal tools

MCL coexpression mm9:344: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 7: Line 7:
|ontology_enrichment_uberon=UBERON:0005172!3.33e-14!49;UBERON:0005173!3.33e-14!49;UBERON:0002417!3.33e-14!49;UBERON:0000916!3.33e-14!49;UBERON:0004119!8.92e-14!118;UBERON:0000925!8.92e-14!118;UBERON:0006595!8.92e-14!118;UBERON:0001007!5.56e-13!116;UBERON:0001555!5.56e-13!116;UBERON:0007026!5.56e-13!116;UBERON:0002100!2.25e-12!90;UBERON:0005177!2.45e-12!79;UBERON:0004921!2.95e-12!114;UBERON:0009569!7.54e-12!66;UBERON:0002365!1.54e-10!25;UBERON:0002330!1.54e-10!25;UBERON:0003104!3.79e-10!61;UBERON:0009142!3.79e-10!61;UBERON:0000466!4.49e-10!79;UBERON:0009854!7.55e-10!23;UBERON:0009856!7.55e-10!23;UBERON:0005256!8.46e-10!45;UBERON:0002107!2.88e-09!22;UBERON:0007499!2.88e-09!22;UBERON:0006925!2.88e-09!22;UBERON:0009497!2.88e-09!22;UBERON:0000015!2.88e-09!22;UBERON:0002423!2.88e-09!22;UBERON:0006235!2.88e-09!22;UBERON:0008835!2.88e-09!22;UBERON:0003894!2.88e-09!22;UBERON:0004161!2.88e-09!22;UBERON:0008836!2.88e-09!22;UBERON:0000475!9.26e-08!150;UBERON:0005409!2.34e-07!47;UBERON:0000467!6.88e-07!308;UBERON:0000480!6.88e-07!308
|ontology_enrichment_uberon=UBERON:0005172!3.33e-14!49;UBERON:0005173!3.33e-14!49;UBERON:0002417!3.33e-14!49;UBERON:0000916!3.33e-14!49;UBERON:0004119!8.92e-14!118;UBERON:0000925!8.92e-14!118;UBERON:0006595!8.92e-14!118;UBERON:0001007!5.56e-13!116;UBERON:0001555!5.56e-13!116;UBERON:0007026!5.56e-13!116;UBERON:0002100!2.25e-12!90;UBERON:0005177!2.45e-12!79;UBERON:0004921!2.95e-12!114;UBERON:0009569!7.54e-12!66;UBERON:0002365!1.54e-10!25;UBERON:0002330!1.54e-10!25;UBERON:0003104!3.79e-10!61;UBERON:0009142!3.79e-10!61;UBERON:0000466!4.49e-10!79;UBERON:0009854!7.55e-10!23;UBERON:0009856!7.55e-10!23;UBERON:0005256!8.46e-10!45;UBERON:0002107!2.88e-09!22;UBERON:0007499!2.88e-09!22;UBERON:0006925!2.88e-09!22;UBERON:0009497!2.88e-09!22;UBERON:0000015!2.88e-09!22;UBERON:0002423!2.88e-09!22;UBERON:0006235!2.88e-09!22;UBERON:0008835!2.88e-09!22;UBERON:0003894!2.88e-09!22;UBERON:0004161!2.88e-09!22;UBERON:0008836!2.88e-09!22;UBERON:0000475!9.26e-08!150;UBERON:0005409!2.34e-07!47;UBERON:0000467!6.88e-07!308;UBERON:0000480!6.88e-07!308
|tfbs_overrepresentation_for_novel_motifs=0.119369,1.36836,0.104705,0.444236,0.425918,0.15366,0.214952,2.36731,0.247005,0.0552943,0.184424,0.206436,1.04792,0.223743,0.211839,0,0.374352,0.719963,0.202974,0.726362,0.0854539,0.495413,0.223092,0.42246,0.108863,0.243873,0.612988,0.50041,0.070875,0.443023,0.15805,1.16433,0.179513,0.157141,0.21244,0.239233,0.0440547,0.2039,0.144722,0.115421,0.416906,0.486105,2.55827,0.468447,0.113054,0.137727,0.309657,0.177618,1.21544,0.252327,0.359925,0.264025,0.238206,0.586014,1.46504,0.22892,0.264175,0.197526,0.575924,0.227439,0.442975,0.271204,0.804186,0.350689,0.237053,0.384144,0.727642,1.06142,0.438956,0.919268,0.0946191,0.454788,0.0443679,0.632466,0.0127734,0.295983,0.808662,0.300684,0.428247,0.0875778,0.0226705,0.388829,0.270104,0.683588,0.5282,0.00146799,0.00214041,0.685943,1.52233,1.21975,0.793151,0.532634,0.471416,0.439258,0.0351424,0.53819,0.700484,0.473864,0.309859,0.0947155,0.382998,0.460042,0.570262,0.360414,0.359547,0.161095,0.409409,0.174935,0.301886,0.0863521,0.115332,0.57187,1.03451,0.187937,0.799811,0.0491861,0.00328254,0.146927,0.375433,0.164609,0.637418,0.333667,1.96957,0.811709,0.851175,0.43141,0.220786,0.465518,0.726225,1.18711,0.554981,0.140083,0.698665,0.238902,0.820264,0.183848,0.78425,0.488358,0.773792,1.58317,1.18855,0.732048,0.707182,0.469382,0.35423,0.486829,1.51727,1.54387,1.28685,0.193635,0.261373,0.00126457,0.587436,0.30395,0.238221,0.662158,0.264789,0.491663,0.117954,0.124089,0.782756,1.30789,1.10281,0.365959,0.351524,0.232792,0.167532,0.205322,0.0723599
|tfbs_overrepresentation_for_novel_motifs=0.119369,1.36836,0.104705,0.444236,0.425918,0.15366,0.214952,2.36731,0.247005,0.0552943,0.184424,0.206436,1.04792,0.223743,0.211839,0,0.374352,0.719963,0.202974,0.726362,0.0854539,0.495413,0.223092,0.42246,0.108863,0.243873,0.612988,0.50041,0.070875,0.443023,0.15805,1.16433,0.179513,0.157141,0.21244,0.239233,0.0440547,0.2039,0.144722,0.115421,0.416906,0.486105,2.55827,0.468447,0.113054,0.137727,0.309657,0.177618,1.21544,0.252327,0.359925,0.264025,0.238206,0.586014,1.46504,0.22892,0.264175,0.197526,0.575924,0.227439,0.442975,0.271204,0.804186,0.350689,0.237053,0.384144,0.727642,1.06142,0.438956,0.919268,0.0946191,0.454788,0.0443679,0.632466,0.0127734,0.295983,0.808662,0.300684,0.428247,0.0875778,0.0226705,0.388829,0.270104,0.683588,0.5282,0.00146799,0.00214041,0.685943,1.52233,1.21975,0.793151,0.532634,0.471416,0.439258,0.0351424,0.53819,0.700484,0.473864,0.309859,0.0947155,0.382998,0.460042,0.570262,0.360414,0.359547,0.161095,0.409409,0.174935,0.301886,0.0863521,0.115332,0.57187,1.03451,0.187937,0.799811,0.0491861,0.00328254,0.146927,0.375433,0.164609,0.637418,0.333667,1.96957,0.811709,0.851175,0.43141,0.220786,0.465518,0.726225,1.18711,0.554981,0.140083,0.698665,0.238902,0.820264,0.183848,0.78425,0.488358,0.773792,1.58317,1.18855,0.732048,0.707182,0.469382,0.35423,0.486829,1.51727,1.54387,1.28685,0.193635,0.261373,0.00126457,0.587436,0.30395,0.238221,0.662158,0.264789,0.491663,0.117954,0.124089,0.782756,1.30789,1.10281,0.365959,0.351524,0.232792,0.167532,0.205322,0.0723599
|tfbs_overrepresentation_jaspar=MA0003.1;0.0282723,MA0004.1;2.02605,MA0006.1;0.0564154,MA0007.1;1.35014,MA0009.1;1.21381,MA0014.1;0.00148366,MA0017.1;1.32958,MA0019.1;0.329708,MA0024.1;0.445298,MA0025.1;0.694475,MA0027.1;2.07936,MA0028.1;0.0607913,MA0029.1;0.426655,MA0030.1;0.43227,MA0031.1;0.402033,MA0038.1;0.683113,MA0040.1;0.494317,MA0041.1;0.10094,MA0042.1;0.312557,MA0043.1;0.569356,MA0046.1;0.514989,MA0048.1;0.582467,MA0050.1;0.169675,MA0051.1;0.250459,MA0052.1;0.501416,MA0055.1;0.00826433,MA0056.1;0,MA0057.1;0.523647,MA0058.1;2.76845,MA0059.1;3.56672,MA0060.1;0.0282014,MA0061.1;0.968084,MA0063.1;0,MA0066.1;6.44193,MA0067.1;0.798606,MA0068.1;0.189439,MA0069.1;0.501715,MA0070.1;0.493176,MA0071.1;1.55083,MA0072.1;0.485733,MA0073.1;0.070907,MA0074.1;3.32022,MA0076.1;0.0767377,MA0077.1;0.466808,MA0078.1;0.275441,MA0081.1;0.109386,MA0083.1;0.568641,MA0084.1;1.11388,MA0087.1;0.530004,MA0088.1;0.0121376,MA0089.1;0,MA0090.1;0.392445,MA0091.1;0.153118,MA0092.1;0.785025,MA0093.1;2.98443,MA0095.1;0,MA0098.1;0,MA0100.1;0.201797,MA0101.1;0.681587,MA0103.1;0.54098,MA0105.1;0.515449,MA0106.1;0.769607,MA0107.1;0.526347,MA0108.2;0.348212,MA0109.1;0,MA0111.1;0.820963,MA0113.1;0.720329,MA0114.1;1.36887,MA0115.1;0.571881,MA0116.1;0.0563303,MA0117.1;0.542889,MA0119.1;0.101951,MA0122.1;0.560692,MA0124.1;0.748494,MA0125.1;0.67944,MA0130.1;0,MA0131.1;0.870354,MA0132.1;0,MA0133.1;0,MA0135.1;0.602346,MA0136.1;0.224107,MA0139.1;0.425271,MA0140.1;0.201717,MA0141.1;0.588454,MA0142.1;0.389844,MA0143.1;1.37286,MA0144.1;0.344625,MA0145.1;0.371879,MA0146.1;0.0539901,MA0147.1;1.9513,MA0148.1;0.155077,MA0149.1;0.104621,MA0062.2;0.012228,MA0035.2;0.205003,MA0039.2;0.0146707,MA0138.2;0.319705,MA0002.2;0.434007,MA0137.2;0.276466,MA0104.2;1.99577,MA0047.2;0.243248,MA0112.2;3.93828,MA0065.2;1.391,MA0150.1;0.833976,MA0151.1;0,MA0152.1;0.243327,MA0153.1;0.617506,MA0154.1;0.360977,MA0155.1;1.21447,MA0156.1;0.0763253,MA0157.1;1.69756,MA0158.1;0,MA0159.1;1.0751,MA0160.1;0.924598,MA0161.1;0,MA0162.1;0.00444313,MA0163.1;0.768601,MA0164.1;0.224368,MA0080.2;0.247073,MA0018.2;0.654151,MA0099.2;0.314682,MA0079.2;0.00581275,MA0102.2;1.16504,MA0258.1;6.11707,MA0259.1;0.626539,MA0442.1;0
}}
}}

Revision as of 11:36, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:126609088..126609102,+p@chr10:126609088..126609102
+
Mm9::chr11:120359399..120359417,+p@chr11:120359399..120359417
+
Mm9::chr11:78776834..78776858,-p@chr11:78776834..78776858
-
Mm9::chr14:56377145..56377150,-p5@Cideb
Mm9::chr15:103129216..103129239,+p@chr15:103129216..103129239
+
Mm9::chr15:99236280..99236308,+p3@Tmbim6
Mm9::chr15:99238959..99238984,+p@chr15:99238959..99238984
+
Mm9::chr16:11805078..11805091,-p@chr16:11805078..11805091
-
Mm9::chr16:17925854..17925892,-p@chr16:17925854..17925892
-
Mm9::chr19:45066815..45066834,+p@chr19:45066815..45066834
+
Mm9::chr19:45066921..45066946,+p@chr19:45066921..45066946
+
Mm9::chr1:173059851..173059876,-p@chr1:173059851..173059876
-
Mm9::chr1:74442224..74442252,+p@chr1:74442224..74442252
+
Mm9::chr3:130937075..130937100,-p@chr3:130937075..130937100
-
Mm9::chr3:95124069..95124087,+p10@Lass2
Mm9::chr3:95124089..95124125,+p5@Lass2
Mm9::chr4:40131983..40132022,+p@chr4:40131983..40132022
+
Mm9::chr7:106305561..106305588,-p@chr7:106305561..106305588
-
Mm9::chr7:19846337..19846356,-p4@Vasp
Mm9::chr7:86441901..86441934,+p@chr7:86441901..86441934
+
Mm9::chr7:86441991..86442025,+p@chr7:86441991..86442025
+
Mm9::chr9:108847397..108847459,+p@chr9:108847397..108847459
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
abdomen element3.33e-1449
abdominal segment element3.33e-1449
abdominal segment of trunk3.33e-1449
abdomen3.33e-1449
endoderm-derived structure8.92e-14118
endoderm8.92e-14118
presumptive endoderm8.92e-14118
digestive system5.56e-13116
digestive tract5.56e-13116
primitive gut5.56e-13116
trunk2.25e-1290
trunk region element2.45e-1279
subdivision of digestive tract2.95e-12114
subdivision of trunk7.54e-1266
exocrine gland1.54e-1025
exocrine system1.54e-1025
mesenchyme3.79e-1061
entire embryonic mesenchyme3.79e-1061
immaterial anatomical entity4.49e-1079
digestive tract diverticulum7.55e-1023
sac7.55e-1023
trunk mesenchyme8.46e-1045
liver2.88e-0922
epithelial sac2.88e-0922
digestive gland2.88e-0922
epithelium of foregut-midgut junction2.88e-0922
anatomical boundary2.88e-0922
hepatobiliary system2.88e-0922
foregut-midgut junction2.88e-0922
hepatic diverticulum2.88e-0922
liver primordium2.88e-0922
septum transversum2.88e-0922
liver bud2.88e-0922
organism subdivision9.26e-08150
gastrointestinal system2.34e-0747
anatomical system6.88e-07308
anatomical group6.88e-07308


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0282723
MA0004.12.02605
MA0006.10.0564154
MA0007.11.35014
MA0009.11.21381
MA0014.10.00148366
MA0017.11.32958
MA0019.10.329708
MA0024.10.445298
MA0025.10.694475
MA0027.12.07936
MA0028.10.0607913
MA0029.10.426655
MA0030.10.43227
MA0031.10.402033
MA0038.10.683113
MA0040.10.494317
MA0041.10.10094
MA0042.10.312557
MA0043.10.569356
MA0046.10.514989
MA0048.10.582467
MA0050.10.169675
MA0051.10.250459
MA0052.10.501416
MA0055.10.00826433
MA0056.10
MA0057.10.523647
MA0058.12.76845
MA0059.13.56672
MA0060.10.0282014
MA0061.10.968084
MA0063.10
MA0066.16.44193
MA0067.10.798606
MA0068.10.189439
MA0069.10.501715
MA0070.10.493176
MA0071.11.55083
MA0072.10.485733
MA0073.10.070907
MA0074.13.32022
MA0076.10.0767377
MA0077.10.466808
MA0078.10.275441
MA0081.10.109386
MA0083.10.568641
MA0084.11.11388
MA0087.10.530004
MA0088.10.0121376
MA0089.10
MA0090.10.392445
MA0091.10.153118
MA0092.10.785025
MA0093.12.98443
MA0095.10
MA0098.10
MA0100.10.201797
MA0101.10.681587
MA0103.10.54098
MA0105.10.515449
MA0106.10.769607
MA0107.10.526347
MA0108.20.348212
MA0109.10
MA0111.10.820963
MA0113.10.720329
MA0114.11.36887
MA0115.10.571881
MA0116.10.0563303
MA0117.10.542889
MA0119.10.101951
MA0122.10.560692
MA0124.10.748494
MA0125.10.67944
MA0130.10
MA0131.10.870354
MA0132.10
MA0133.10
MA0135.10.602346
MA0136.10.224107
MA0139.10.425271
MA0140.10.201717
MA0141.10.588454
MA0142.10.389844
MA0143.11.37286
MA0144.10.344625
MA0145.10.371879
MA0146.10.0539901
MA0147.11.9513
MA0148.10.155077
MA0149.10.104621
MA0062.20.012228
MA0035.20.205003
MA0039.20.0146707
MA0138.20.319705
MA0002.20.434007
MA0137.20.276466
MA0104.21.99577
MA0047.20.243248
MA0112.23.93828
MA0065.21.391
MA0150.10.833976
MA0151.10
MA0152.10.243327
MA0153.10.617506
MA0154.10.360977
MA0155.11.21447
MA0156.10.0763253
MA0157.11.69756
MA0158.10
MA0159.11.0751
MA0160.10.924598
MA0161.10
MA0162.10.00444313
MA0163.10.768601
MA0164.10.224368
MA0080.20.247073
MA0018.20.654151
MA0099.20.314682
MA0079.20.00581275
MA0102.21.16504
MA0258.16.11707
MA0259.10.626539
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:344&oldid=2573739"