FFCP PHASE1:Hg19::chr1:161207875..161207889,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9970|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7969|TSSclassifier=W|UniProt=|association_with_transcript=0bp_to_ENST00000503547,ENST00000505944_5end|coexpression_cluster_id=C5|description=CAGE_peak_4_at_NR1I3_5end|id=chr1:161207875..161207889,-|ontology_enrichment_celltype=CL:0000181!5.67e-17!12;CL:0000417!5.67e-17!12;CL:0000668!5.67e-17!12;CL:0000414!5.67e-17!12;CL:0000412!5.67e-17!12;CL:0000182!5.67e-17!12|ontology_enrichment_celltype_v019=CL:0000182;4.18e-12;12|ontology_enrichment_celltype_v019_2=CL:0000182,4.30e-12,12|ontology_enrichment_development_v019=UBERON:0004161;5.58e-13;11!UBERON:0009497;3.85e-11;13|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000369!2.89e-28!4;UBERON:0002435!2.89e-28!4;UBERON:0000204!2.89e-28!4;UBERON:0010082!2.89e-28!4;UBERON:0002107!1.76e-23!19;UBERON:0006925!1.76e-23!19;UBERON:0008836!1.76e-23!19;UBERON:0005057!5.76e-23!26;UBERON:0008835!3.00e-20!22;UBERON:0003894!3.00e-20!22;UBERON:0009854!2.34e-19!23;UBERON:0007499!8.66e-18!25;UBERON:0009497!8.66e-18!25;UBERON:0000015!8.66e-18!25;UBERON:0002423!8.66e-18!25;UBERON:0006235!8.66e-18!25;UBERON:0004161!8.66e-18!25;UBERON:0005383!1.39e-17!3;UBERON:0005382!1.39e-17!3;UBERON:0009856!4.28e-17!26;UBERON:0009663!1.87e-16!7;UBERON:0002365!2.72e-14!31;UBERON:0002330!2.72e-14!31;UBERON:0001874!8.58e-14!1;UBERON:0005172!1.05e-13!55;UBERON:0005173!1.05e-13!55;UBERON:0001882!2.07e-13!1;UBERON:0005403!2.07e-13!1;UBERON:0002308!6.13e-13!9;UBERON:0002420!6.13e-13!9;UBERON:0000125!6.13e-13!9;UBERON:0007245!6.13e-13!9;UBERON:0010009!6.13e-13!9;UBERON:0010011!6.13e-13!9;UBERON:0000454!6.13e-13!9;UBERON:0002368!1.27e-12!35;UBERON:0002417!2.80e-12!61;UBERON:0000916!2.80e-12!61;UBERON:0000949!9.62e-10!45;UBERON:0003929!4.66e-08!54;UBERON:0001873!1.45e-07!2;UBERON:0010122!1.45e-07!2;UBERON:0002530!2.42e-07!59|ontology_enrichment_uberon_v019=UBERON:0002107;2.67e-28;19!UBERON:0006925;2.67e-28;19!UBERON:0002423;1.09e-21;25!UBERON:0002365;1.91e-17;31!UBERON:0002330;1.91e-17;31!UBERON:0002368;1.18e-14;33!UBERON:0000949;1.34e-10;43!UBERON:0005172;3.01e-08;52!UBERON:0005173;3.01e-08;52!UBERON:0002417;4.50e-07;58!UBERON:0000916;4.50e-07;58|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.67e-28,19;UBERON:0006925,2.67e-28,19;UBERON:0008836,2.67e-28,19;UBERON:0008835,1.51e-24,22;UBERON:0003894,1.51e-24,22;UBERON:0009854,1.64e-23,23;UBERON:0007499,1.09e-21,25;UBERON:0009497,1.09e-21,25;UBERON:0000015,1.09e-21,25;UBERON:0002423,1.09e-21,25;UBERON:0006235,1.09e-21,25;UBERON:0004161,1.09e-21,25;UBERON:0009856,6.97e-21,26;UBERON:0002365,1.26e-17,31;UBERON:0002330,1.26e-17,31;UBERON:0002368,1.09e-15,35;UBERON:0000949,2.44e-12,45;UBERON:0003929,2.23e-10,54;UBERON:0005172,2.23e-10,54;UBERON:0005173,2.23e-10,54;UBERON:0002530,1.52e-09,59;UBERON:0002417,2.15e-09,60;UBERON:0000916,2.15e-09,60;UBERON:0005911,5.27e-07,82|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33775174109154,0,5.31710916013264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29731237272711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10674542563371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.56898487976713,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@NR1I3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=9970 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7969 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000503547,ENST00000505944_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_4_at_NR1I3_5end | |||
|id=chr1:161207875..161207889,- | |||
|ontology_enrichment_celltype=CL:0000181!5.67e-17!12;CL:0000417!5.67e-17!12;CL:0000668!5.67e-17!12;CL:0000414!5.67e-17!12;CL:0000412!5.67e-17!12;CL:0000182!5.67e-17!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;4.18e-12;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.30e-12,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.58e-13;11!UBERON:0009497;3.85e-11;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000369!2.89e-28!4;UBERON:0002435!2.89e-28!4;UBERON:0000204!2.89e-28!4;UBERON:0010082!2.89e-28!4;UBERON:0002107!1.76e-23!19;UBERON:0006925!1.76e-23!19;UBERON:0008836!1.76e-23!19;UBERON:0005057!5.76e-23!26;UBERON:0008835!3.00e-20!22;UBERON:0003894!3.00e-20!22;UBERON:0009854!2.34e-19!23;UBERON:0007499!8.66e-18!25;UBERON:0009497!8.66e-18!25;UBERON:0000015!8.66e-18!25;UBERON:0002423!8.66e-18!25;UBERON:0006235!8.66e-18!25;UBERON:0004161!8.66e-18!25;UBERON:0005383!1.39e-17!3;UBERON:0005382!1.39e-17!3;UBERON:0009856!4.28e-17!26;UBERON:0009663!1.87e-16!7;UBERON:0002365!2.72e-14!31;UBERON:0002330!2.72e-14!31;UBERON:0001874!8.58e-14!1;UBERON:0005172!1.05e-13!55;UBERON:0005173!1.05e-13!55;UBERON:0001882!2.07e-13!1;UBERON:0005403!2.07e-13!1;UBERON:0002308!6.13e-13!9;UBERON:0002420!6.13e-13!9;UBERON:0000125!6.13e-13!9;UBERON:0007245!6.13e-13!9;UBERON:0010009!6.13e-13!9;UBERON:0010011!6.13e-13!9;UBERON:0000454!6.13e-13!9;UBERON:0002368!1.27e-12!35;UBERON:0002417!2.80e-12!61;UBERON:0000916!2.80e-12!61;UBERON:0000949!9.62e-10!45;UBERON:0003929!4.66e-08!54;UBERON:0001873!1.45e-07!2;UBERON:0010122!1.45e-07!2;UBERON:0002530!2.42e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.67e-28;19!UBERON:0006925;2.67e-28;19!UBERON:0002423;1.09e-21;25!UBERON:0002365;1.91e-17;31!UBERON:0002330;1.91e-17;31!UBERON:0002368;1.18e-14;33!UBERON:0000949;1.34e-10;43!UBERON:0005172;3.01e-08;52!UBERON:0005173;3.01e-08;52!UBERON:0002417;4.50e-07;58!UBERON:0000916;4.50e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.67e-28,19;UBERON:0006925,2.67e-28,19;UBERON:0008836,2.67e-28,19;UBERON:0008835,1.51e-24,22;UBERON:0003894,1.51e-24,22;UBERON:0009854,1.64e-23,23;UBERON:0007499,1.09e-21,25;UBERON:0009497,1.09e-21,25;UBERON:0000015,1.09e-21,25;UBERON:0002423,1.09e-21,25;UBERON:0006235,1.09e-21,25;UBERON:0004161,1.09e-21,25;UBERON:0009856,6.97e-21,26;UBERON:0002365,1.26e-17,31;UBERON:0002330,1.26e-17,31;UBERON:0002368,1.09e-15,35;UBERON:0000949,2.44e-12,45;UBERON:0003929,2.23e-10,54;UBERON:0005172,2.23e-10,54;UBERON:0005173,2.23e-10,54;UBERON:0002530,1.52e-09,59;UBERON:0002417,2.15e-09,60;UBERON:0000916,2.15e-09,60;UBERON:0005911,5.27e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.33775174109154,0,5.31710916013264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29731237272711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10674542563371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.56898487976713,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@NR1I3 | |||
}} |
Revision as of 01:22, 12 September 2013
Short description: | p4@NR1I3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_NR1I3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000503547, ENST00000505944_5end |
EntrezGene: | NR1I3 |
HGNC: | 7969 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.30e-12 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 2.67e-28 | 19 |
digestive gland | 2.67e-28 | 19 |
liver bud | 2.67e-28 | 19 |
hepatic diverticulum | 1.51e-24 | 22 |
liver primordium | 1.51e-24 | 22 |
digestive tract diverticulum | 1.64e-23 | 23 |
epithelial sac | 1.09e-21 | 25 |
epithelium of foregut-midgut junction | 1.09e-21 | 25 |
anatomical boundary | 1.09e-21 | 25 |
hepatobiliary system | 1.09e-21 | 25 |
foregut-midgut junction | 1.09e-21 | 25 |
septum transversum | 1.09e-21 | 25 |
sac | 6.97e-21 | 26 |
exocrine gland | 1.26e-17 | 31 |
exocrine system | 1.26e-17 | 31 |
endocrine gland | 1.09e-15 | 35 |
endocrine system | 2.44e-12 | 45 |
gut epithelium | 2.23e-10 | 54 |
abdomen element | 2.23e-10 | 54 |
abdominal segment element | 2.23e-10 | 54 |
gland | 1.52e-09 | 59 |
abdominal segment of trunk | 2.15e-09 | 60 |
abdomen | 2.15e-09 | 60 |
endo-epithelium | 5.27e-07 | 82 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.