FFCP PHASE1:Hg19::chr11:2159658..2159696,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3481|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=5466|TSSclassifier=S|UniProt=P01344|association_with_transcript=-27bp_to_AK126688_5end|coexpression_cluster_id=C172|description=CAGE_peak_28_at_IGF2_5end|id=chr11:2159658..2159696,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000349;6.71e-12;19|ontology_enrichment_celltype_v019_2=CL:0000349,5.38e-12,19|ontology_enrichment_development_v019=UBERON:0003104;7.79e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.85e-16!115;UBERON:0000481!3.90e-13!347;UBERON:0004119!1.07e-11!169;UBERON:0000925!1.07e-11!169;UBERON:0006595!1.07e-11!169;UBERON:0005631!1.23e-10!14;UBERON:0000158!1.23e-10!14;UBERON:0000468!2.18e-10!659;UBERON:0000119!6.60e-10!312;UBERON:0000475!1.99e-09!365;UBERON:0000477!2.52e-09!286;UBERON:0000483!2.69e-09!309;UBERON:0000922!2.27e-08!612;UBERON:0001008!8.74e-08!45;UBERON:0000062!9.97e-08!511;UBERON:0000467!1.11e-07!625;UBERON:0000480!1.45e-07!626;UBERON:0002050!1.69e-07!605;UBERON:0005423!1.69e-07!605;UBERON:0005256!1.83e-07!143;UBERON:0001007!1.83e-07!155;UBERON:0001555!1.83e-07!155;UBERON:0007026!1.83e-07!155;UBERON:0004111!2.05e-07!241;UBERON:0000923!2.99e-07!604;UBERON:0005291!2.99e-07!604;UBERON:0006598!2.99e-07!604;UBERON:0002532!2.99e-07!604;UBERON:0006554!3.03e-07!44;UBERON:0003124!3.81e-07!7;UBERON:0002100!4.35e-07!216;UBERON:0000478!6.41e-07!24|ontology_enrichment_uberon_v019=UBERON:0000478;1.19e-11;24!UBERON:0005631;4.30e-11;10!UBERON:0000158;4.30e-11;10!UBERON:0000077;7.00e-08;27!UBERON:0000305;2.06e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.62e-16,14;UBERON:0000158,9.62e-16,14;UBERON:0004119,1.97e-14,160;UBERON:0000925,1.97e-14,160;UBERON:0006595,1.97e-14,160;UBERON:0000478,9.76e-12,24;UBERON:0001008,2.02e-10,48;UBERON:0003124,4.78e-10,7;UBERON:0006554,1.22e-09,47;UBERON:0003064,2.42e-09,28;UBERON:0003104,7.76e-09,160;UBERON:0009142,7.76e-09,160;UBERON:0004921,1.65e-08,118;UBERON:0001007,4.84e-08,145;UBERON:0001555,4.84e-08,145;UBERON:0007026,4.84e-08,145;UBERON:0007023,1.19e-07,114;UBERON:0001046,1.37e-07,19;UBERON:0000305,1.94e-07,7;UBERON:0000162,4.35e-07,14;UBERON:0001353,4.35e-07,14;UBERON:0000163,4.35e-07,14;UBERON:0006866,4.35e-07,14;UBERON:0000164,4.35e-07,14;UBERON:0000931,4.35e-07,14;UBERON:0000077,4.47e-07,29|phase1_expression=0.54503513781167,1.07050261945492,0.140954404095971,0,0.893922188854576,0,0,0,0,0.982935746006035,0.697801167972428,7.42700665242586,10.8144461073666,1.48519623552056,2.65117900582333,0,0,0,0,0.61560529038394,2.85600967741954,2.82109249330279,0,0,0.125542639594803,0,0,0,0,0,1.39334510984468,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0.0945348171640679,0.443458794925128,0,0.589405839739707,0,0,0,0,0,0,0,0,0,1.72046919021225,0.347140501607594,0,0.419499436209906,0.275118041940067,0,0.516833518338658,0,1.00416183829401,0,0,0,0,1.62028389576352,0,0.22452937262617,0.112611480483322,1.53316637465883,0.949265659568129,0.732806975721629,0,0,1.74437620857014,0,0,0.132409180813219,0,0,1.12135520028461,0,0.49333509683432,0.622422070799533,0.134710672069688,0,3.93529311876822,7.49028701823999,0.937285727335186,0,0,0,0,0,0,0,0.491337269247072,0.103325781175765,3.56400857184616,5.43987244412825,0,0,0.841680569770331,0.875829639103749,0.277064115484183,4.82875382968922,0.30648779579902,1.35214253015937,0.113432183160021,0,0.213557388818567,0,0,0,0,0,0,0,0,0.368199594569197,0.484938170456436,0,0.10075209822764,0.169560592310488,0.193260853163297,0,0,0,0,0.813357600086629,0.518305275076852,0.252320850875628,0,0,0,0,11.1448302727675,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,1.2347220339942,5.88034845542168,0,0,0.590789906681404,0,9.47010976781974,0,0,0,0,0.833296006426766,0.651616610620649,0,0,0.34779121492523,0.117408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0.560655421726804,5.23152082599936,0.36669142910475,0,0,0,5.85063856486715,0,0.514414748524284,1.41849132023278,0.532844358032199,12.8680194292333,26.5884586641807,1.64648067356154,0,8.88479871856365,0,0,0,0,0,0,0,0,0,0,1.01346914667305,1.43833425785268,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,6.99341502799097,1.00034104211935,4.88277042659524,2.28767947683888,2.3195768543631,1.57702415033935,2.45996971484698,0.300946099727719,11.3703752027992,4.1389228517002,0,0,0,24.0835423679171,22.9906093953273,0,0,0,5.75942385747893,11.6504807657348,14.212343786495,0,1.53461973288062,0,0,1.02341449813341,0,1.48418066444991,0,0,0,1.03850885836724,0,22.9632954224082,1.60405176242628,0.184161977871793,3.55924789310281,1.45672934405374,6.81846957789005,0.451199612907412,0.847168708148562,0,0,0.211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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3481 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=5466 | |||
|TSSclassifier=S | |||
|UniProt=P01344 | |||
|association_with_transcript=-27bp_to_AK126688_5end | |||
|coexpression_cluster_id=C172 | |||
|description=CAGE_peak_28_at_IGF2_5end | |||
|id=chr11:2159658..2159696,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;6.71e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,5.38e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0003104;7.79e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.85e-16!115;UBERON:0000481!3.90e-13!347;UBERON:0004119!1.07e-11!169;UBERON:0000925!1.07e-11!169;UBERON:0006595!1.07e-11!169;UBERON:0005631!1.23e-10!14;UBERON:0000158!1.23e-10!14;UBERON:0000468!2.18e-10!659;UBERON:0000119!6.60e-10!312;UBERON:0000475!1.99e-09!365;UBERON:0000477!2.52e-09!286;UBERON:0000483!2.69e-09!309;UBERON:0000922!2.27e-08!612;UBERON:0001008!8.74e-08!45;UBERON:0000062!9.97e-08!511;UBERON:0000467!1.11e-07!625;UBERON:0000480!1.45e-07!626;UBERON:0002050!1.69e-07!605;UBERON:0005423!1.69e-07!605;UBERON:0005256!1.83e-07!143;UBERON:0001007!1.83e-07!155;UBERON:0001555!1.83e-07!155;UBERON:0007026!1.83e-07!155;UBERON:0004111!2.05e-07!241;UBERON:0000923!2.99e-07!604;UBERON:0005291!2.99e-07!604;UBERON:0006598!2.99e-07!604;UBERON:0002532!2.99e-07!604;UBERON:0006554!3.03e-07!44;UBERON:0003124!3.81e-07!7;UBERON:0002100!4.35e-07!216;UBERON:0000478!6.41e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.19e-11;24!UBERON:0005631;4.30e-11;10!UBERON:0000158;4.30e-11;10!UBERON:0000077;7.00e-08;27!UBERON:0000305;2.06e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,9.62e-16,14;UBERON:0000158,9.62e-16,14;UBERON:0004119,1.97e-14,160;UBERON:0000925,1.97e-14,160;UBERON:0006595,1.97e-14,160;UBERON:0000478,9.76e-12,24;UBERON:0001008,2.02e-10,48;UBERON:0003124,4.78e-10,7;UBERON:0006554,1.22e-09,47;UBERON:0003064,2.42e-09,28;UBERON:0003104,7.76e-09,160;UBERON:0009142,7.76e-09,160;UBERON:0004921,1.65e-08,118;UBERON:0001007,4.84e-08,145;UBERON:0001555,4.84e-08,145;UBERON:0007026,4.84e-08,145;UBERON:0007023,1.19e-07,114;UBERON:0001046,1.37e-07,19;UBERON:0000305,1.94e-07,7;UBERON:0000162,4.35e-07,14;UBERON:0001353,4.35e-07,14;UBERON:0000163,4.35e-07,14;UBERON:0006866,4.35e-07,14;UBERON:0000164,4.35e-07,14;UBERON:0000931,4.35e-07,14;UBERON:0000077,4.47e-07,29 | |||
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| |||
|short_description=p28@IGF2 | |||
}} |
Revision as of 17:12, 10 September 2013
Short description: | p28@IGF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_28_at_IGF2_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | -27bp_to_AK126688_5end |
EntrezGene: | IGF2 |
HGNC: | 5466 |
UniProt: | P01344 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 5.38e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 9.62e-16 | 14 |
membranous layer | 9.62e-16 | 14 |
endoderm-derived structure | 1.97e-14 | 160 |
endoderm | 1.97e-14 | 160 |
presumptive endoderm | 1.97e-14 | 160 |
extraembryonic structure | 9.76e-12 | 24 |
renal system | 2.02e-10 | 48 |
chorion | 4.78e-10 | 7 |
urinary system structure | 1.22e-09 | 47 |
intermediate mesoderm | 2.42e-09 | 28 |
mesenchyme | 7.76e-09 | 160 |
entire embryonic mesenchyme | 7.76e-09 | 160 |
subdivision of digestive tract | 1.65e-08 | 118 |
digestive system | 4.84e-08 | 145 |
digestive tract | 4.84e-08 | 145 |
primitive gut | 4.84e-08 | 145 |
adult organism | 1.19e-07 | 114 |
hindgut | 1.37e-07 | 19 |
amnion | 1.94e-07 | 7 |
cloaca | 4.35e-07 | 14 |
anal region | 4.35e-07 | 14 |
embryonic cloaca | 4.35e-07 | 14 |
terminal part of digestive tract | 4.35e-07 | 14 |
primitive urogenital sinus | 4.35e-07 | 14 |
proctodeum | 4.35e-07 | 14 |
mixed endoderm/mesoderm-derived structure | 4.47e-07 | 29 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.