FFCP PHASE1:Hg19::chr11:6424016..6424033,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=322|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=581|TSSclassifier=S|UniProt=|association_with_transcript=-2bp_to_ENST00000524626,uc001mcz.1_5end|coexpression_cluster_id=C3185|description=CAGE_peak_7_at_APBB1_5end|id=chr11:6424016..6424033,-|ontology_enrichment_celltype=CL:0000542!3.98e-41!53;CL:0000051!3.98e-41!53;CL:0000838!5.96e-40!52;CL:0000084!1.58e-34!25;CL:0000827!1.58e-34!25;CL:0000791!3.17e-27!18;CL:0000789!3.17e-27!18;CL:0002420!3.17e-27!18;CL:0002419!3.17e-27!18;CL:0000790!3.17e-27!18;CL:0002087!1.85e-21!119;CL:0000738!4.42e-21!140;CL:0000037!2.09e-18!172;CL:0000566!2.09e-18!172;CL:0000988!3.98e-18!182;CL:0002031!1.05e-16!124;CL:0002032!5.94e-16!165;CL:0000837!5.94e-16!165;CL:0000625!1.57e-15!11;CL:0000624!1.31e-11!6;CL:0000945!2.01e-07!24;CL:0000826!2.01e-07!24|ontology_enrichment_celltype_v019=CL:0000791;3.74e-34;18!CL:0000789;3.74e-34;18!CL:0002419;3.74e-34;18!CL:0000084;5.65e-34;25!CL:0000624;2.00e-22;6!CL:0000542;1.04e-12;53!CL:0000815;4.53e-12;2!CL:0000792;4.53e-12;2!CL:0002677;4.53e-12;2!CL:0000625;5.58e-12;11!CL:0000898;2.49e-08;3!CL:0002127;4.05e-07;1!CL:0000911;4.05e-07;1!CL:0000814;4.05e-07;1|ontology_enrichment_celltype_v019_2=CL:0000791,3.22e-34,18;CL:0000789,3.22e-34,18;CL:0002420,3.22e-34,18;CL:0002419,3.22e-34,18;CL:0000790,3.22e-34,18;CL:0000084,3.99e-34,25;CL:0000827,3.99e-34,25;CL:0000838,2.30e-23,52;CL:0000542,7.39e-23,53;CL:0000051,7.39e-23,53;CL:0000624,2.07e-22,6;CL:0000625,4.98e-12,11;CL:0000815,6.17e-12,2;CL:0000792,6.17e-12,2;CL:0002677,6.17e-12,2;CL:0002087,7.59e-10,115;CL:0000738,5.60e-09,136;CL:0000898,3.06e-08,3;CL:0002031,4.09e-08,120;CL:0002127,3.95e-07,1;CL:0000914,3.95e-07,1;CL:0000911,3.95e-07,1;CL:0000814,3.95e-07,1;CL:0002042,3.95e-07,1;CL:0002039,3.95e-07,1;CL:0002040,3.95e-07,1;CL:0002041,3.95e-07,1|ontology_enrichment_development_v019=CL:0000790;3.74e-34;18!CL:0000051;1.04e-12;53|ontology_enrichment_disease=DOID:0060058!1.15e-07!10|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!2.98e-09!7;UBERON:0009722!4.02e-09!11;UBERON:0007690!4.02e-09!11;UBERON:0006562!5.44e-09!11;UBERON:0002370!1.26e-08!4;UBERON:0005058!1.26e-08!4;UBERON:0009113!1.26e-08!4;UBERON:0003295!1.26e-08!4;UBERON:0005562!1.26e-08!4;UBERON:0000974!3.87e-08!10;UBERON:0001042!5.97e-08!10;UBERON:0009145!5.97e-08!10;UBERON:0000178!5.98e-08!15;UBERON:0000179!5.98e-08!15;UBERON:0000463!5.98e-08!15;UBERON:0003351!6.71e-08!6;UBERON:0008814!9.81e-08!15|ontology_enrichment_uberon_v019=UBERON:0002370;1.02e-12;2!UBERON:0005058;1.02e-12;2!UBERON:0009113;1.02e-12;2|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.04e-13,4;UBERON:0005058,1.04e-13,4;UBERON:0009113,1.04e-13,4;UBERON:0003295,1.04e-13,4;UBERON:0005562,1.04e-13,4;UBERON:0003351,2.74e-09,6;UBERON:0004177,5.09e-08,7;UBERON:0005057,5.09e-08,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.157421562627358,0,0.383829398097213,0.154816123316076,0,0,0,3.09868802321207,0,0,0.553995408531877,0.200544447470142,0.868043482863407,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.853460445133014,0,0,0,0.954053754535364,1.1384259382189,0,0.382273228125229,1.32171328579026,0,0.526768169550154,1.57367816091066,1.17903228824749,1.64481199199607,0.334372990781356,3.91106719960308,1.89379122293893,5.84480185223734,1.11410456885174,1.17842362989935,0,1.08321545506006,0.896639238079726,0.780356085359269,2.13769275984779,1.93445012450094,1.44901542867526,4.00373720537563,1.87278579662799,1.04535523804977,0.793165398882963,0.766440987203842,1.71813722741315,0.506039384039006,1.91139248594458,0,0.950452044448374,0.451725357233318,1.27986611154418,1.24930726552346,0.710331756132051,0.821127996921047,1.20964045934839,0.802320587350522,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.29755719297581,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0.502257091432126,0,0,0,0,0,0,0,4.9317463357152,2.1673383622212,0.431255149719035,0.256686072559497,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.17781969722645,0,0,0,0,0,1.01489521846434,0.764637207142375,0,0.714695326373367,0.411362273086194,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=322 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=581 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-2bp_to_ENST00000524626,uc001mcz.1_5end | |||
|coexpression_cluster_id=C3185 | |||
|description=CAGE_peak_7_at_APBB1_5end | |||
|id=chr11:6424016..6424033,- | |||
|ontology_enrichment_celltype=CL:0000542!3.98e-41!53;CL:0000051!3.98e-41!53;CL:0000838!5.96e-40!52;CL:0000084!1.58e-34!25;CL:0000827!1.58e-34!25;CL:0000791!3.17e-27!18;CL:0000789!3.17e-27!18;CL:0002420!3.17e-27!18;CL:0002419!3.17e-27!18;CL:0000790!3.17e-27!18;CL:0002087!1.85e-21!119;CL:0000738!4.42e-21!140;CL:0000037!2.09e-18!172;CL:0000566!2.09e-18!172;CL:0000988!3.98e-18!182;CL:0002031!1.05e-16!124;CL:0002032!5.94e-16!165;CL:0000837!5.94e-16!165;CL:0000625!1.57e-15!11;CL:0000624!1.31e-11!6;CL:0000945!2.01e-07!24;CL:0000826!2.01e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.74e-34;18!CL:0000789;3.74e-34;18!CL:0002419;3.74e-34;18!CL:0000084;5.65e-34;25!CL:0000624;2.00e-22;6!CL:0000542;1.04e-12;53!CL:0000815;4.53e-12;2!CL:0000792;4.53e-12;2!CL:0002677;4.53e-12;2!CL:0000625;5.58e-12;11!CL:0000898;2.49e-08;3!CL:0002127;4.05e-07;1!CL:0000911;4.05e-07;1!CL:0000814;4.05e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.22e-34,18;CL:0000789,3.22e-34,18;CL:0002420,3.22e-34,18;CL:0002419,3.22e-34,18;CL:0000790,3.22e-34,18;CL:0000084,3.99e-34,25;CL:0000827,3.99e-34,25;CL:0000838,2.30e-23,52;CL:0000542,7.39e-23,53;CL:0000051,7.39e-23,53;CL:0000624,2.07e-22,6;CL:0000625,4.98e-12,11;CL:0000815,6.17e-12,2;CL:0000792,6.17e-12,2;CL:0002677,6.17e-12,2;CL:0002087,7.59e-10,115;CL:0000738,5.60e-09,136;CL:0000898,3.06e-08,3;CL:0002031,4.09e-08,120;CL:0002127,3.95e-07,1;CL:0000914,3.95e-07,1;CL:0000911,3.95e-07,1;CL:0000814,3.95e-07,1;CL:0002042,3.95e-07,1;CL:0002039,3.95e-07,1;CL:0002040,3.95e-07,1;CL:0002041,3.95e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000790;3.74e-34;18!CL:0000051;1.04e-12;53 | |||
|ontology_enrichment_disease=DOID:0060058!1.15e-07!10 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.98e-09!7;UBERON:0009722!4.02e-09!11;UBERON:0007690!4.02e-09!11;UBERON:0006562!5.44e-09!11;UBERON:0002370!1.26e-08!4;UBERON:0005058!1.26e-08!4;UBERON:0009113!1.26e-08!4;UBERON:0003295!1.26e-08!4;UBERON:0005562!1.26e-08!4;UBERON:0000974!3.87e-08!10;UBERON:0001042!5.97e-08!10;UBERON:0009145!5.97e-08!10;UBERON:0000178!5.98e-08!15;UBERON:0000179!5.98e-08!15;UBERON:0000463!5.98e-08!15;UBERON:0003351!6.71e-08!6;UBERON:0008814!9.81e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.02e-12;2!UBERON:0005058;1.02e-12;2!UBERON:0009113;1.02e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.04e-13,4;UBERON:0005058,1.04e-13,4;UBERON:0009113,1.04e-13,4;UBERON:0003295,1.04e-13,4;UBERON:0005562,1.04e-13,4;UBERON:0003351,2.74e-09,6;UBERON:0004177,5.09e-08,7;UBERON:0005057,5.09e-08,7 | |||
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|short_description=p7@APBB1 | |||
}} |
Revision as of 18:46, 10 September 2013
Short description: | p7@APBB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_APBB1_5end |
Coexpression cluster: | C3185_chronic_acute_thymus_CD4_Hodgkin_CD8_NK |
Association with transcript: | -2bp_to_ENST00000524626, uc001mcz.1_5end |
EntrezGene: | APBB1 |
HGNC: | 581 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.22e-34 | 18 |
alpha-beta T cell | 3.22e-34 | 18 |
immature T cell | 3.22e-34 | 18 |
mature T cell | 3.22e-34 | 18 |
immature alpha-beta T cell | 3.22e-34 | 18 |
T cell | 3.99e-34 | 25 |
pro-T cell | 3.99e-34 | 25 |
lymphoid lineage restricted progenitor cell | 2.30e-23 | 52 |
lymphocyte | 7.39e-23 | 53 |
common lymphoid progenitor | 7.39e-23 | 53 |
CD4-positive, alpha-beta T cell | 2.07e-22 | 6 |
CD8-positive, alpha-beta T cell | 4.98e-12 | 11 |
regulatory T cell | 6.17e-12 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.17e-12 | 2 |
naive regulatory T cell | 6.17e-12 | 2 |
nongranular leukocyte | 7.59e-10 | 115 |
leukocyte | 5.60e-09 | 136 |
naive T cell | 3.06e-08 | 3 |
hematopoietic lineage restricted progenitor cell | 4.09e-08 | 120 |
innate effector T cell | 3.95e-07 | 1 |
immature NK T cell | 3.95e-07 | 1 |
effector T cell | 3.95e-07 | 1 |
mature NK T cell | 3.95e-07 | 1 |
immature NK T cell stage IV | 3.95e-07 | 1 |
immature NK T cell stage I | 3.95e-07 | 1 |
immature NK T cell stage II | 3.95e-07 | 1 |
immature NK T cell stage III | 3.95e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.04e-13 | 4 |
hemolymphoid system gland | 1.04e-13 | 4 |
thymic region | 1.04e-13 | 4 |
pharyngeal gland | 1.04e-13 | 4 |
thymus primordium | 1.04e-13 | 4 |
pharyngeal epithelium | 2.74e-09 | 6 |
hemopoietic organ | 5.09e-08 | 7 |
immune organ | 5.09e-08 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.