FFCP PHASE1:Hg19::chr12:40953908..40953923,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C156|description=CAGE_peak_at_chr12:40953908..40953923,+|id=chr12:40953908..40953923,+|ontology_enrichment_celltype=CL:0000945!2.89e-50!24;CL:0000826!2.89e-50!24;CL:0000946!2.16e-26!1;CL:0000786!2.16e-26!1;CL:0000980!2.16e-26!1;CL:0000838!2.46e-23!52;CL:0000542!6.72e-23!53;CL:0000051!6.72e-23!53;CL:0000785!6.43e-14!2;CL:0000955!6.43e-14!2;CL:0000818!6.43e-14!2;CL:0000954!6.43e-14!2;CL:0000816!6.43e-14!2;CL:0002087!3.83e-10!119;CL:0002031!9.78e-10!124;CL:0000817!1.01e-09!3;CL:0000738!1.27e-08!140;CL:0002032!2.62e-07!165;CL:0000837!2.62e-07!165;CL:0000037!5.24e-07!172;CL:0000566!5.24e-07!172|ontology_enrichment_celltype_v019=CL:0000945;1.05e-34;24!CL:0000946;1.84e-34;1!CL:0000786;1.84e-34;1!CL:0000542;9.24e-07;53|ontology_enrichment_celltype_v019_2=CL:0000945,1.05e-34,24;CL:0000826,1.05e-34,24;CL:0000946,1.84e-34,1;CL:0000786,1.84e-34,1;CL:0000980,1.84e-34,1;CL:0000785,5.48e-18,2;CL:0000955,5.48e-18,2;CL:0000818,5.48e-18,2;CL:0000954,5.48e-18,2;CL:0000816,5.48e-18,2;CL:0000838,2.36e-16,52;CL:0000542,4.70e-16,53;CL:0000051,4.70e-16,53;CL:0000817,1.85e-12,3;CL:0002087,1.44e-07,115;CL:0002031,2.87e-07,120|ontology_enrichment_development_v019=CL:0000954;5.48e-18;2!CL:0000051;9.24e-07;53|ontology_enrichment_disease=DOID:630!3.58e-26!1;DOID:0050177!3.58e-26!1;DOID:0050427!3.58e-26!1;DOID:2355!1.26e-25!1;DOID:74!1.55e-13!2;DOID:0060058!8.47e-11!10;DOID:1287!2.04e-07!4|ontology_enrichment_disease_v019=DOID:630;4.27e-34;1!DOID:0050177;4.27e-34;1!DOID:0050427;4.27e-34;1|ontology_enrichment_disease_v019_2=DOID:630,3.61e-34,1;DOID:0050177,3.61e-34,1;DOID:0050427,3.61e-34,1|ontology_enrichment_uberon=UBERON:0002106!1.54e-09!3;UBERON:0004854!1.54e-09!3;UBERON:0009034!1.54e-09!3;UBERON:0002095!1.54e-09!3;UBERON:0004782!1.54e-09!3;UBERON:0003281!1.54e-09!3;UBERON:0009664!1.54e-09!3;UBERON:0002296!1.54e-09!3;UBERON:0005602!1.54e-09!3;UBERON:0001179!1.54e-09!3;UBERON:0006293!1.54e-09!3|ontology_enrichment_uberon_v019=UBERON:0002106;3.24e-12;3!UBERON:0004177;7.49e-08;5!UBERON:0005057;7.49e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.24e-12,3;UBERON:0004854,3.24e-12,3;UBERON:0009034,3.24e-12,3;UBERON:0002095,3.24e-12,3;UBERON:0004782,3.24e-12,3;UBERON:0003281,3.24e-12,3;UBERON:0009664,3.24e-12,3;UBERON:0002296,3.24e-12,3;UBERON:0005602,3.24e-12,3;UBERON:0001179,3.24e-12,3;UBERON:0006293,3.24e-12,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81404456212093,3.44822475689772,2.99100968991981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0253569173528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8468219076388|short_description=p@chr12:40953908..40953923,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C156 | |||
|description=CAGE_peak_at_chr12:40953908..40953923,+ | |||
|id=chr12:40953908..40953923,+ | |||
|ontology_enrichment_celltype=CL:0000945!2.89e-50!24;CL:0000826!2.89e-50!24;CL:0000946!2.16e-26!1;CL:0000786!2.16e-26!1;CL:0000980!2.16e-26!1;CL:0000838!2.46e-23!52;CL:0000542!6.72e-23!53;CL:0000051!6.72e-23!53;CL:0000785!6.43e-14!2;CL:0000955!6.43e-14!2;CL:0000818!6.43e-14!2;CL:0000954!6.43e-14!2;CL:0000816!6.43e-14!2;CL:0002087!3.83e-10!119;CL:0002031!9.78e-10!124;CL:0000817!1.01e-09!3;CL:0000738!1.27e-08!140;CL:0002032!2.62e-07!165;CL:0000837!2.62e-07!165;CL:0000037!5.24e-07!172;CL:0000566!5.24e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.05e-34;24!CL:0000946;1.84e-34;1!CL:0000786;1.84e-34;1!CL:0000542;9.24e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,1.05e-34,24;CL:0000826,1.05e-34,24;CL:0000946,1.84e-34,1;CL:0000786,1.84e-34,1;CL:0000980,1.84e-34,1;CL:0000785,5.48e-18,2;CL:0000955,5.48e-18,2;CL:0000818,5.48e-18,2;CL:0000954,5.48e-18,2;CL:0000816,5.48e-18,2;CL:0000838,2.36e-16,52;CL:0000542,4.70e-16,53;CL:0000051,4.70e-16,53;CL:0000817,1.85e-12,3;CL:0002087,1.44e-07,115;CL:0002031,2.87e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000954;5.48e-18;2!CL:0000051;9.24e-07;53 | |||
|ontology_enrichment_disease=DOID:630!3.58e-26!1;DOID:0050177!3.58e-26!1;DOID:0050427!3.58e-26!1;DOID:2355!1.26e-25!1;DOID:74!1.55e-13!2;DOID:0060058!8.47e-11!10;DOID:1287!2.04e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:630;4.27e-34;1!DOID:0050177;4.27e-34;1!DOID:0050427;4.27e-34;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.61e-34,1;DOID:0050177,3.61e-34,1;DOID:0050427,3.61e-34,1 | |||
|ontology_enrichment_uberon=UBERON:0002106!1.54e-09!3;UBERON:0004854!1.54e-09!3;UBERON:0009034!1.54e-09!3;UBERON:0002095!1.54e-09!3;UBERON:0004782!1.54e-09!3;UBERON:0003281!1.54e-09!3;UBERON:0009664!1.54e-09!3;UBERON:0002296!1.54e-09!3;UBERON:0005602!1.54e-09!3;UBERON:0001179!1.54e-09!3;UBERON:0006293!1.54e-09!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.24e-12;3!UBERON:0004177;7.49e-08;5!UBERON:0005057;7.49e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.24e-12,3;UBERON:0004854,3.24e-12,3;UBERON:0009034,3.24e-12,3;UBERON:0002095,3.24e-12,3;UBERON:0004782,3.24e-12,3;UBERON:0003281,3.24e-12,3;UBERON:0009664,3.24e-12,3;UBERON:0002296,3.24e-12,3;UBERON:0005602,3.24e-12,3;UBERON:0001179,3.24e-12,3;UBERON:0006293,3.24e-12,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.81404456212093,3.44822475689772,2.99100968991981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0253569173528,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99882311849858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.8468219076388 | |||
|short_description=p@chr12:40953908..40953923,+ | |||
}} |
Revision as of 22:34, 10 September 2013
Short description: | p@chr12:40953908..40953923, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:40953908..40953923, + |
Coexpression cluster: | C156_plasma_splenic_hereditary_B_large_xeroderma_b |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 1.05e-34 | 24 |
pro-B cell | 1.05e-34 | 24 |
antibody secreting cell | 1.84e-34 | 1 |
plasma cell | 1.84e-34 | 1 |
plasmablast | 1.84e-34 | 1 |
mature B cell | 5.48e-18 | 2 |
pre-B-II cell | 5.48e-18 | 2 |
transitional stage B cell | 5.48e-18 | 2 |
small pre-B-II cell | 5.48e-18 | 2 |
immature B cell | 5.48e-18 | 2 |
lymphoid lineage restricted progenitor cell | 2.36e-16 | 52 |
lymphocyte | 4.70e-16 | 53 |
common lymphoid progenitor | 4.70e-16 | 53 |
precursor B cell | 1.85e-12 | 3 |
nongranular leukocyte | 1.44e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 2.87e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.24e-12 | 3 |
gastrointestinal system mesentery | 3.24e-12 | 3 |
stomach region | 3.24e-12 | 3 |
mesentery | 3.24e-12 | 3 |
gastrointestinal system serosa | 3.24e-12 | 3 |
mesentery of stomach | 3.24e-12 | 3 |
gut mesentery | 3.24e-12 | 3 |
dorsal mesentery | 3.24e-12 | 3 |
dorsal mesogastrium | 3.24e-12 | 3 |
peritoneal cavity | 3.24e-12 | 3 |
spleen primordium | 3.24e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.61e-34 | 1 |
monogenic disease | 3.61e-34 | 1 |
xeroderma pigmentosum | 3.61e-34 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.