FFCP PHASE1:Hg19::chr19:50980096..50980112,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=112703|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25107|TSSclassifier=W|UniProt=Q6IPT2|association_with_transcript=-93bp_to_ENST00000270620,ENST00000391816,NM_138411,uc002psg.2,uc002psh.2,uc002psi.2_5end|description=CAGE_peak_3_at_FAM71E1_5end|id=chr19:50980096..50980112,-|ontology_enrichment_celltype=CL:0000066!1.28e-15!254|ontology_enrichment_celltype_v019=CL:0002322;8.98e-14;5!CL:0000039;3.39e-07;7!CL:0000586;3.39e-07;7|ontology_enrichment_celltype_v019_2=CL:0002322,6.80e-14,5;CL:0000066,2.23e-07,253;CL:0000039,2.70e-07,7;CL:0000586,2.70e-07,7|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!2.55e-21!106;DOID:0050687!1.45e-16!143;DOID:162!2.26e-09!235;DOID:14566!5.47e-09!239;DOID:0050615!8.27e-07!16|ontology_enrichment_disease_v019=DOID:5093;2.62e-07;4!DOID:1612;2.62e-07;4|ontology_enrichment_disease_v019_2=DOID:305,9.88e-10,106;DOID:5093,1.73e-07,4;DOID:1612,1.73e-07,4;DOID:0050687,3.99e-07,143|ontology_enrichment_uberon=UBERON:0004119!4.14e-14!169;UBERON:0000925!4.14e-14!169;UBERON:0006595!4.14e-14!169;UBERON:0001007!6.05e-13!155;UBERON:0001555!6.05e-13!155;UBERON:0007026!6.05e-13!155;UBERON:0004921!2.95e-12!129;UBERON:0004185!2.95e-12!129;UBERON:0001004!5.45e-12!72;UBERON:0000077!3.78e-11!130;UBERON:0000466!8.26e-10!126;UBERON:0001041!9.03e-10!98;UBERON:0000464!1.13e-09!104;UBERON:0000065!3.26e-09!53;UBERON:0005911!3.87e-09!82;UBERON:0005177!2.74e-08!107;UBERON:0005153!7.67e-08!37;UBERON:0002048!1.30e-07!22;UBERON:0000117!1.30e-07!22;UBERON:0000171!1.30e-07!22;UBERON:0000170!1.30e-07!22;UBERON:0005597!1.30e-07!22;UBERON:0000118!1.30e-07!22;UBERON:0008947!1.56e-07!38;UBERON:0003258!1.56e-07!38;UBERON:0007023!2.28e-07!115;UBERON:0005157!6.80e-07!51|ontology_enrichment_uberon_v019=UBERON:0003135;4.22e-12;11!UBERON:0000473;3.31e-09;8!UBERON:0006947;9.61e-09;3!UBERON:0004054;9.61e-09;3!UBERON:0001044;5.12e-08;6!UBERON:0003293;5.12e-08;6!UBERON:0003294;5.12e-08;6!UBERON:0010047;5.12e-08;6!UBERON:0003408;5.12e-08;6!UBERON:0000167;5.12e-08;6!UBERON:0000007;2.07e-07;2!UBERON:0003101;4.32e-07;22!UBERON:0000079;4.32e-07;22!UBERON:0001829;5.50e-07;2!UBERON:0000058;8.93e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0003135,5.44e-12,11;UBERON:0000473,2.75e-09,8;UBERON:0006947,2.10e-08,3;UBERON:0004054,2.10e-08,3;UBERON:0001044,3.52e-08,6;UBERON:0003293,3.52e-08,6;UBERON:0003294,3.52e-08,6;UBERON:0010047,3.52e-08,6;UBERON:0000167,3.52e-08,6;UBERON:0000007,2.09e-07,2;UBERON:0002530,2.36e-07,59;UBERON:0002553,3.15e-07,61;UBERON:0001829,3.39e-07,2;UBERON:0005177,4.81e-07,101;UBERON:0003101,5.52e-07,22;UBERON:0000079,5.52e-07,22;UBERON:0009569,9.63e-07,112|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.79120467188971,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.157421562627358,0.393364276848904,0,0.309632246632152,0,0,0.739508020333575,0.0774672005803016,0,0,0,0,0,0.223915474239924,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0.382273228125229,1.32171328579026,0,0,0.393419540227666,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0.443067789167242,0,0.128091319725675,0,0.164437904603676,0,0,0.14828656316206,0.267540828089713,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.196468613246569,0.728590576585084,0,0,0,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.860413786167011,2.5614478287215,1.45782745153634,1.39432731443422,1.45125477021519,1.26160425437814,0.36497735907583,0,0,0,0,0,0,0,0.482022059766964,0.441175890929576,0.217879444092406,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,0,1.96565443335525,1.18157981336281,0,0.491953754172454,0,0.219500570817251,1.1240175325762,0,0.370353780634118,0,0,0,0,0,0,0,0.190254152234598,4.74122638775565,1.71697232418975,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0.802025881213139,0.828728900423067,0,0,0.131124414959424,1.80479845162965,1.30926073077505,0,0,0.211103257785751,0,0,0,0,0.270946437543853,0,0.509752546090077,0.831076008928724,0,0,0,0,0,0.325378394664303,0.618246069886334,0,0,0,1.30012049207304,0,0.193341436584244,0,0,0.137836572484531,0,0,0.0852266274161009,0,0.330569830721956,0.384380134730212,0.127612712494584,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.384888450902048,0,1.088909848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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=112703 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25107 | |||
|TSSclassifier=W | |||
|UniProt=Q6IPT2 | |||
|association_with_transcript=-93bp_to_ENST00000270620,ENST00000391816,NM_138411,uc002psg.2,uc002psh.2,uc002psi.2_5end | |||
|description=CAGE_peak_3_at_FAM71E1_5end | |||
|id=chr19:50980096..50980112,- | |||
|ontology_enrichment_celltype=CL:0000066!1.28e-15!254 | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.98e-14;5!CL:0000039;3.39e-07;7!CL:0000586;3.39e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.80e-14,5;CL:0000066,2.23e-07,253;CL:0000039,2.70e-07,7;CL:0000586,2.70e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!2.55e-21!106;DOID:0050687!1.45e-16!143;DOID:162!2.26e-09!235;DOID:14566!5.47e-09!239;DOID:0050615!8.27e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.62e-07;4!DOID:1612;2.62e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.88e-10,106;DOID:5093,1.73e-07,4;DOID:1612,1.73e-07,4;DOID:0050687,3.99e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.14e-14!169;UBERON:0000925!4.14e-14!169;UBERON:0006595!4.14e-14!169;UBERON:0001007!6.05e-13!155;UBERON:0001555!6.05e-13!155;UBERON:0007026!6.05e-13!155;UBERON:0004921!2.95e-12!129;UBERON:0004185!2.95e-12!129;UBERON:0001004!5.45e-12!72;UBERON:0000077!3.78e-11!130;UBERON:0000466!8.26e-10!126;UBERON:0001041!9.03e-10!98;UBERON:0000464!1.13e-09!104;UBERON:0000065!3.26e-09!53;UBERON:0005911!3.87e-09!82;UBERON:0005177!2.74e-08!107;UBERON:0005153!7.67e-08!37;UBERON:0002048!1.30e-07!22;UBERON:0000117!1.30e-07!22;UBERON:0000171!1.30e-07!22;UBERON:0000170!1.30e-07!22;UBERON:0005597!1.30e-07!22;UBERON:0000118!1.30e-07!22;UBERON:0008947!1.56e-07!38;UBERON:0003258!1.56e-07!38;UBERON:0007023!2.28e-07!115;UBERON:0005157!6.80e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0003135;4.22e-12;11!UBERON:0000473;3.31e-09;8!UBERON:0006947;9.61e-09;3!UBERON:0004054;9.61e-09;3!UBERON:0001044;5.12e-08;6!UBERON:0003293;5.12e-08;6!UBERON:0003294;5.12e-08;6!UBERON:0010047;5.12e-08;6!UBERON:0003408;5.12e-08;6!UBERON:0000167;5.12e-08;6!UBERON:0000007;2.07e-07;2!UBERON:0003101;4.32e-07;22!UBERON:0000079;4.32e-07;22!UBERON:0001829;5.50e-07;2!UBERON:0000058;8.93e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,5.44e-12,11;UBERON:0000473,2.75e-09,8;UBERON:0006947,2.10e-08,3;UBERON:0004054,2.10e-08,3;UBERON:0001044,3.52e-08,6;UBERON:0003293,3.52e-08,6;UBERON:0003294,3.52e-08,6;UBERON:0010047,3.52e-08,6;UBERON:0000167,3.52e-08,6;UBERON:0000007,2.09e-07,2;UBERON:0002530,2.36e-07,59;UBERON:0002553,3.15e-07,61;UBERON:0001829,3.39e-07,2;UBERON:0005177,4.81e-07,101;UBERON:0003101,5.52e-07,22;UBERON:0000079,5.52e-07,22;UBERON:0009569,9.63e-07,112 | |||
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| |||
|short_description=p3@FAM71E1 | |||
}} |
Revision as of 21:55, 11 September 2013
Short description: | p3@FAM71E1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_FAM71E1_5end |
Coexpression cluster: | NA |
Association with transcript: | -93bp_to_ENST00000270620, ENST00000391816, NM_138411, uc002psg.2, uc002psh.2, uc002psi.2_5end |
EntrezGene: | FAM71E1 |
HGNC: | 25107 |
UniProt: | Q6IPT2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.80e-14 | 5 |
epithelial cell | 2.23e-07 | 253 |
germ line cell | 2.70e-07 | 7 |
germ cell | 2.70e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 5.44e-12 | 11 |
testis | 2.75e-09 | 8 |
male genital duct | 2.10e-08 | 3 |
internal male genitalia | 2.10e-08 | 3 |
saliva-secreting gland | 3.52e-08 | 6 |
gland of oral region | 3.52e-08 | 6 |
gland of foregut | 3.52e-08 | 6 |
oral gland | 3.52e-08 | 6 |
oral cavity | 3.52e-08 | 6 |
pituitary gland | 2.09e-07 | 2 |
gland | 2.36e-07 | 59 |
anatomical cavity | 3.15e-07 | 61 |
major salivary gland | 3.39e-07 | 2 |
trunk region element | 4.81e-07 | 101 |
male organism | 5.52e-07 | 22 |
male reproductive system | 5.52e-07 | 22 |
subdivision of trunk | 9.63e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.88e-10 | 106 |
thoracic cancer | 1.73e-07 | 4 |
breast cancer | 1.73e-07 | 4 |
cell type cancer | 3.99e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.