FFCP PHASE1:Hg19::chr2:167350710..167350728,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6332|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10594|TSSclassifier=S|UniProt=C9JII9|association_with_transcript=0bp_to_ENST00000441411,uc002udv.1_5end|coexpression_cluster_id=C131|description=CAGE_peak_3_at_SCN7A_5end|id=chr2:167350710..167350728,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006603;1.94e-11;65!UBERON:0004872;2.23e-08;7!UBERON:0006241;1.26e-07;3!UBERON:0003057;1.26e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!7.67e-83!115;UBERON:0001049!2.22e-22!57;UBERON:0005068!2.22e-22!57;UBERON:0006241!2.22e-22!57;UBERON:0007135!2.22e-22!57;UBERON:0002346!2.44e-21!90;UBERON:0003075!8.66e-21!86;UBERON:0007284!8.66e-21!86;UBERON:0002616!3.83e-18!59;UBERON:0005743!1.38e-17!86;UBERON:0001017!9.46e-17!82;UBERON:0000073!9.92e-17!94;UBERON:0001016!9.92e-17!94;UBERON:0000481!1.00e-16!347;UBERON:0003080!2.04e-16!42;UBERON:0002780!1.84e-15!41;UBERON:0001890!1.84e-15!41;UBERON:0006240!1.84e-15!41;UBERON:0000955!1.02e-14!69;UBERON:0006238!1.02e-14!69;UBERON:0003056!1.06e-12!61;UBERON:0000153!1.22e-12!129;UBERON:0007811!1.22e-12!129;UBERON:0003103!1.02e-11!69;UBERON:0000924!2.52e-11!173;UBERON:0006601!2.52e-11!173;UBERON:0004121!8.66e-11!169;UBERON:0000033!9.57e-11!123;UBERON:0000483!1.03e-10!309;UBERON:0000468!1.14e-10!659;UBERON:0000922!1.27e-10!612;UBERON:0000119!2.08e-10!312;UBERON:0000062!3.16e-10!511;UBERON:0000477!4.35e-10!286;UBERON:0002020!5.06e-10!34;UBERON:0003528!5.06e-10!34;UBERON:0004111!6.32e-10!241;UBERON:0001893!7.87e-10!34;UBERON:0002050!1.45e-09!605;UBERON:0005423!1.45e-09!605;UBERON:0002791!3.98e-09!33;UBERON:0000923!4.41e-09!604;UBERON:0005291!4.41e-09!604;UBERON:0006598!4.41e-09!604;UBERON:0002532!4.41e-09!604;UBERON:0000475!5.55e-09!365;UBERON:0000467!8.59e-09!625;UBERON:0000480!1.00e-08!626;UBERON:0001894!1.09e-08!7;UBERON:0006222!1.09e-08!7;UBERON:0000025!1.26e-08!194;UBERON:0001869!1.93e-08!32;UBERON:0002619!2.57e-08!22;UBERON:0007100!2.76e-08!27;UBERON:0001950!4.47e-08!20;UBERON:0002298!9.89e-08!8;UBERON:0003076!3.37e-07!15;UBERON:0003057!3.37e-07!15;UBERON:0000064!4.57e-07!219;UBERON:0000956!5.77e-07!25;UBERON:0000203!5.77e-07!25|ontology_enrichment_uberon_v019=UBERON:0007100;5.13e-14;25!UBERON:0007023;8.86e-11;114!UBERON:0000948;1.65e-09;22!UBERON:0000922;6.52e-09;49!UBERON:0003978;7.11e-09;3!UBERON:0000946;7.11e-09;3!UBERON:0004921;9.66e-09;33!UBERON:0004151;1.09e-08;3!UBERON:0006947;3.31e-08;3!UBERON:0004054;3.31e-08;3!UBERON:0000160;9.37e-08;17!UBERON:0002240;1.26e-07;3!UBERON:0005174;1.26e-07;3!UBERON:0001137;1.26e-07;3!UBERON:0005409;2.32e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.24e-44,114;UBERON:0003103,3.04e-17,68;UBERON:0007100,1.02e-12,27;UBERON:0005409,2.19e-09,25;UBERON:0004921,6.99e-09,118;UBERON:0003978,7.69e-09,3;UBERON:0009751,7.69e-09,3;UBERON:0000946,7.69e-09,3;UBERON:0002523,7.69e-09,3;UBERON:0005983,7.69e-09,3;UBERON:0002165,7.69e-09,3;UBERON:0002062,7.69e-09,3;UBERON:0007280,7.69e-09,3;UBERON:0004151,1.13e-08,3;UBERON:0000948,1.52e-08,24;UBERON:0005498,1.52e-08,24;UBERON:0004140,1.52e-08,24;UBERON:0009881,1.52e-08,24;UBERON:0004141,1.52e-08,24;UBERON:0003084,1.52e-08,24;UBERON:0007005,1.52e-08,24;UBERON:0004139,1.52e-08,24;UBERON:0004291,1.52e-08,24;UBERON:0006947,3.65e-08,3;UBERON:0004054,3.65e-08,3;UBERON:0000160,7.97e-08,17;UBERON:0002240,1.57e-07,3;UBERON:0005174,1.57e-07,3;UBERON:0001137,1.57e-07,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,1.66221330396589,0,0,0,0,0,0.189069634328136,0,0,3.1434978119451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12135520028461,0,0,2.8008993185979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,8.24328093181778,0,0,0,0,0,0.386682873168488,0,0,0,0.214840489736547,0.145016693914229,0.0852266274161009,0.890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0.255897791311334,8.98671874871233,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73632660280006,5.24715801637306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.41438007767792,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6332 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10594 | |||
|TSSclassifier=S | |||
|UniProt=C9JII9 | |||
|association_with_transcript=0bp_to_ENST00000441411,uc002udv.1_5end | |||
|coexpression_cluster_id=C131 | |||
|description=CAGE_peak_3_at_SCN7A_5end | |||
|id=chr2:167350710..167350728,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006603;1.94e-11;65!UBERON:0004872;2.23e-08;7!UBERON:0006241;1.26e-07;3!UBERON:0003057;1.26e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.67e-83!115;UBERON:0001049!2.22e-22!57;UBERON:0005068!2.22e-22!57;UBERON:0006241!2.22e-22!57;UBERON:0007135!2.22e-22!57;UBERON:0002346!2.44e-21!90;UBERON:0003075!8.66e-21!86;UBERON:0007284!8.66e-21!86;UBERON:0002616!3.83e-18!59;UBERON:0005743!1.38e-17!86;UBERON:0001017!9.46e-17!82;UBERON:0000073!9.92e-17!94;UBERON:0001016!9.92e-17!94;UBERON:0000481!1.00e-16!347;UBERON:0003080!2.04e-16!42;UBERON:0002780!1.84e-15!41;UBERON:0001890!1.84e-15!41;UBERON:0006240!1.84e-15!41;UBERON:0000955!1.02e-14!69;UBERON:0006238!1.02e-14!69;UBERON:0003056!1.06e-12!61;UBERON:0000153!1.22e-12!129;UBERON:0007811!1.22e-12!129;UBERON:0003103!1.02e-11!69;UBERON:0000924!2.52e-11!173;UBERON:0006601!2.52e-11!173;UBERON:0004121!8.66e-11!169;UBERON:0000033!9.57e-11!123;UBERON:0000483!1.03e-10!309;UBERON:0000468!1.14e-10!659;UBERON:0000922!1.27e-10!612;UBERON:0000119!2.08e-10!312;UBERON:0000062!3.16e-10!511;UBERON:0000477!4.35e-10!286;UBERON:0002020!5.06e-10!34;UBERON:0003528!5.06e-10!34;UBERON:0004111!6.32e-10!241;UBERON:0001893!7.87e-10!34;UBERON:0002050!1.45e-09!605;UBERON:0005423!1.45e-09!605;UBERON:0002791!3.98e-09!33;UBERON:0000923!4.41e-09!604;UBERON:0005291!4.41e-09!604;UBERON:0006598!4.41e-09!604;UBERON:0002532!4.41e-09!604;UBERON:0000475!5.55e-09!365;UBERON:0000467!8.59e-09!625;UBERON:0000480!1.00e-08!626;UBERON:0001894!1.09e-08!7;UBERON:0006222!1.09e-08!7;UBERON:0000025!1.26e-08!194;UBERON:0001869!1.93e-08!32;UBERON:0002619!2.57e-08!22;UBERON:0007100!2.76e-08!27;UBERON:0001950!4.47e-08!20;UBERON:0002298!9.89e-08!8;UBERON:0003076!3.37e-07!15;UBERON:0003057!3.37e-07!15;UBERON:0000064!4.57e-07!219;UBERON:0000956!5.77e-07!25;UBERON:0000203!5.77e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;5.13e-14;25!UBERON:0007023;8.86e-11;114!UBERON:0000948;1.65e-09;22!UBERON:0000922;6.52e-09;49!UBERON:0003978;7.11e-09;3!UBERON:0000946;7.11e-09;3!UBERON:0004921;9.66e-09;33!UBERON:0004151;1.09e-08;3!UBERON:0006947;3.31e-08;3!UBERON:0004054;3.31e-08;3!UBERON:0000160;9.37e-08;17!UBERON:0002240;1.26e-07;3!UBERON:0005174;1.26e-07;3!UBERON:0001137;1.26e-07;3!UBERON:0005409;2.32e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.24e-44,114;UBERON:0003103,3.04e-17,68;UBERON:0007100,1.02e-12,27;UBERON:0005409,2.19e-09,25;UBERON:0004921,6.99e-09,118;UBERON:0003978,7.69e-09,3;UBERON:0009751,7.69e-09,3;UBERON:0000946,7.69e-09,3;UBERON:0002523,7.69e-09,3;UBERON:0005983,7.69e-09,3;UBERON:0002165,7.69e-09,3;UBERON:0002062,7.69e-09,3;UBERON:0007280,7.69e-09,3;UBERON:0004151,1.13e-08,3;UBERON:0000948,1.52e-08,24;UBERON:0005498,1.52e-08,24;UBERON:0004140,1.52e-08,24;UBERON:0009881,1.52e-08,24;UBERON:0004141,1.52e-08,24;UBERON:0003084,1.52e-08,24;UBERON:0007005,1.52e-08,24;UBERON:0004139,1.52e-08,24;UBERON:0004291,1.52e-08,24;UBERON:0006947,3.65e-08,3;UBERON:0004054,3.65e-08,3;UBERON:0000160,7.97e-08,17;UBERON:0002240,1.57e-07,3;UBERON:0005174,1.57e-07,3;UBERON:0001137,1.57e-07,3 | |||
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|short_description=p3@SCN7A | |||
}} |
Revision as of 14:31, 12 September 2013
Short description: | p3@SCN7A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SCN7A_5end |
Coexpression cluster: | C131_lung_trachea_Alveolar_thyroid_umbilical_throat_skin |
Association with transcript: | 0bp_to_ENST00000441411, uc002udv.1_5end |
EntrezGene: | SCN7A |
HGNC: | 10594 |
UniProt: | C9JII9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.24e-44 | 114 |
compound organ | 3.04e-17 | 68 |
primary circulatory organ | 1.02e-12 | 27 |
gastrointestinal system | 2.19e-09 | 25 |
subdivision of digestive tract | 6.99e-09 | 118 |
valve | 7.69e-09 | 3 |
cardiac mesenchyme | 7.69e-09 | 3 |
cardial valve | 7.69e-09 | 3 |
tunica intima | 7.69e-09 | 3 |
heart layer | 7.69e-09 | 3 |
endocardium | 7.69e-09 | 3 |
endocardial cushion | 7.69e-09 | 3 |
presumptive endocardium | 7.69e-09 | 3 |
cardiac chamber | 1.13e-08 | 3 |
heart | 1.52e-08 | 24 |
primitive heart tube | 1.52e-08 | 24 |
primary heart field | 1.52e-08 | 24 |
anterior lateral plate mesoderm | 1.52e-08 | 24 |
heart tube | 1.52e-08 | 24 |
heart primordium | 1.52e-08 | 24 |
cardiac mesoderm | 1.52e-08 | 24 |
cardiogenic plate | 1.52e-08 | 24 |
heart rudiment | 1.52e-08 | 24 |
male genital duct | 3.65e-08 | 3 |
internal male genitalia | 3.65e-08 | 3 |
intestine | 7.97e-08 | 17 |
spinal cord | 1.57e-07 | 3 |
dorsal region element | 1.57e-07 | 3 |
dorsum | 1.57e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.