FFCP PHASE1:Hg19::chr21:31312141..31312150,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2897|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4579|TSSclassifier=S|UniProt=P39086,E7EPZ0|association_with_transcript=79bp_to_ENST00000399907,ENST00000399909_5end|coexpression_cluster_id=C2230|description=CAGE_peak_9_at_GRIK1_5end|id=chr21:31312141..31312150,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006215;5.04e-34;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!7.82e-57!57;UBERON:0005068!7.82e-57!57;UBERON:0006241!7.82e-57!57;UBERON:0007135!7.82e-57!57;UBERON:0002616!2.46e-49!59;UBERON:0000955!3.06e-41!69;UBERON:0006238!3.06e-41!69;UBERON:0003075!7.66e-41!86;UBERON:0007284!7.66e-41!86;UBERON:0005743!2.42e-40!86;UBERON:0001950!4.32e-40!20;UBERON:0002020!1.02e-39!34;UBERON:0003528!1.02e-39!34;UBERON:0001893!1.33e-39!34;UBERON:0002346!6.52e-39!90;UBERON:0001017!2.55e-38!82;UBERON:0002619!1.76e-36!22;UBERON:0000073!2.58e-36!94;UBERON:0001016!2.58e-36!94;UBERON:0001869!6.29e-36!32;UBERON:0002791!1.04e-34!33;UBERON:0002780!1.17e-32!41;UBERON:0001890!1.17e-32!41;UBERON:0006240!1.17e-32!41;UBERON:0000956!4.15e-32!25;UBERON:0000203!4.15e-32!25;UBERON:0003080!7.54e-32!42;UBERON:0007023!4.81e-30!115;UBERON:0003076!5.15e-28!15;UBERON:0003057!5.15e-28!15;UBERON:0000033!1.82e-27!123;UBERON:0000988!5.54e-27!3;UBERON:0004733!4.05e-26!12;UBERON:0002028!4.05e-26!12;UBERON:0007277!4.05e-26!12;UBERON:0000153!4.61e-26!129;UBERON:0007811!4.61e-26!129;UBERON:0003056!6.07e-25!61;UBERON:0002680!1.56e-24!9;UBERON:0001895!1.56e-24!9;UBERON:0010092!1.56e-24!9;UBERON:0004732!4.40e-24!13;UBERON:0000200!1.39e-23!6;UBERON:0004121!4.30e-19!169;UBERON:0000924!1.39e-18!173;UBERON:0006601!1.39e-18!173;UBERON:0001870!1.43e-18!2;UBERON:0002148!2.90e-18!2;UBERON:0009662!2.90e-18!2;UBERON:0002298!7.80e-18!8;UBERON:0001872!1.79e-16!5;UBERON:0000025!1.03e-14!194;UBERON:0006331!1.68e-12!3;UBERON:0004111!3.24e-11!241;UBERON:0000064!3.24e-11!219;UBERON:0002702!1.98e-10!1;UBERON:0001871!2.10e-10!7;UBERON:0002022!2.59e-10!1;UBERON:0000477!4.17e-10!286;UBERON:0002902!4.85e-10!1;UBERON:0009899!4.85e-10!1;UBERON:0007190!5.30e-10!1;UBERON:0002581!5.79e-10!1;UBERON:0003112!7.55e-10!1;UBERON:0000032!7.55e-10!1;UBERON:0005253!7.55e-10!1;UBERON:0003128!7.55e-10!1;UBERON:0002241!7.55e-10!1;UBERON:0001703!7.55e-10!1;UBERON:0004761!7.55e-10!1;UBERON:0009617!7.55e-10!1;UBERON:0002336!1.07e-09!1;UBERON:0001018!1.07e-09!1;UBERON:0002473!1.07e-09!1;UBERON:0005340!1.07e-09!1;UBERON:0002316!1.07e-09!1;UBERON:0003544!1.07e-09!1;UBERON:0001020!1.07e-09!1;UBERON:0005970!1.07e-09!1;UBERON:0002437!1.07e-09!1;UBERON:0001882!1.17e-09!1;UBERON:0005403!1.17e-09!1;UBERON:0002308!4.15e-09!9;UBERON:0000125!4.15e-09!9;UBERON:0000483!4.31e-09!309;UBERON:0000119!5.70e-09!312;UBERON:0000475!4.12e-08!365;UBERON:0000349!1.21e-07!5;UBERON:0002037!6.46e-07!6;UBERON:0006215!6.46e-07!6|ontology_enrichment_uberon_v019=UBERON:0002680;9.75e-45;9!UBERON:0001895;9.75e-45;9!UBERON:0000988;5.04e-34;3!UBERON:0004733;5.97e-34;12!UBERON:0002028;5.97e-34;12!UBERON:0004732;1.86e-31;13!UBERON:0002037;8.34e-18;6!UBERON:0002298;8.34e-18;6!UBERON:0000073;1.92e-07;53!UBERON:0002616;1.92e-07;53|ontology_enrichment_uberon_v019_2=UBERON:0002680,9.75e-45,9;UBERON:0001895,9.75e-45,9;UBERON:0010092,9.75e-45,9;UBERON:0000988,4.27e-34,3;UBERON:0004733,5.98e-34,12;UBERON:0002028,5.98e-34,12;UBERON:0007277,5.98e-34,12;UBERON:0004732,1.86e-31,13;UBERON:0003076,1.82e-27,15;UBERON:0003057,1.82e-27,15;UBERON:0002298,7.67e-18,6;UBERON:0002037,9.07e-18,6;UBERON:0006215,9.07e-18,6;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2897 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4579 | |||
|TSSclassifier=S | |||
|UniProt=P39086,E7EPZ0 | |||
|association_with_transcript=79bp_to_ENST00000399907,ENST00000399909_5end | |||
|coexpression_cluster_id=C2230 | |||
|description=CAGE_peak_9_at_GRIK1_5end | |||
|id=chr21:31312141..31312150,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.04e-34;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.82e-57!57;UBERON:0005068!7.82e-57!57;UBERON:0006241!7.82e-57!57;UBERON:0007135!7.82e-57!57;UBERON:0002616!2.46e-49!59;UBERON:0000955!3.06e-41!69;UBERON:0006238!3.06e-41!69;UBERON:0003075!7.66e-41!86;UBERON:0007284!7.66e-41!86;UBERON:0005743!2.42e-40!86;UBERON:0001950!4.32e-40!20;UBERON:0002020!1.02e-39!34;UBERON:0003528!1.02e-39!34;UBERON:0001893!1.33e-39!34;UBERON:0002346!6.52e-39!90;UBERON:0001017!2.55e-38!82;UBERON:0002619!1.76e-36!22;UBERON:0000073!2.58e-36!94;UBERON:0001016!2.58e-36!94;UBERON:0001869!6.29e-36!32;UBERON:0002791!1.04e-34!33;UBERON:0002780!1.17e-32!41;UBERON:0001890!1.17e-32!41;UBERON:0006240!1.17e-32!41;UBERON:0000956!4.15e-32!25;UBERON:0000203!4.15e-32!25;UBERON:0003080!7.54e-32!42;UBERON:0007023!4.81e-30!115;UBERON:0003076!5.15e-28!15;UBERON:0003057!5.15e-28!15;UBERON:0000033!1.82e-27!123;UBERON:0000988!5.54e-27!3;UBERON:0004733!4.05e-26!12;UBERON:0002028!4.05e-26!12;UBERON:0007277!4.05e-26!12;UBERON:0000153!4.61e-26!129;UBERON:0007811!4.61e-26!129;UBERON:0003056!6.07e-25!61;UBERON:0002680!1.56e-24!9;UBERON:0001895!1.56e-24!9;UBERON:0010092!1.56e-24!9;UBERON:0004732!4.40e-24!13;UBERON:0000200!1.39e-23!6;UBERON:0004121!4.30e-19!169;UBERON:0000924!1.39e-18!173;UBERON:0006601!1.39e-18!173;UBERON:0001870!1.43e-18!2;UBERON:0002148!2.90e-18!2;UBERON:0009662!2.90e-18!2;UBERON:0002298!7.80e-18!8;UBERON:0001872!1.79e-16!5;UBERON:0000025!1.03e-14!194;UBERON:0006331!1.68e-12!3;UBERON:0004111!3.24e-11!241;UBERON:0000064!3.24e-11!219;UBERON:0002702!1.98e-10!1;UBERON:0001871!2.10e-10!7;UBERON:0002022!2.59e-10!1;UBERON:0000477!4.17e-10!286;UBERON:0002902!4.85e-10!1;UBERON:0009899!4.85e-10!1;UBERON:0007190!5.30e-10!1;UBERON:0002581!5.79e-10!1;UBERON:0003112!7.55e-10!1;UBERON:0000032!7.55e-10!1;UBERON:0005253!7.55e-10!1;UBERON:0003128!7.55e-10!1;UBERON:0002241!7.55e-10!1;UBERON:0001703!7.55e-10!1;UBERON:0004761!7.55e-10!1;UBERON:0009617!7.55e-10!1;UBERON:0002336!1.07e-09!1;UBERON:0001018!1.07e-09!1;UBERON:0002473!1.07e-09!1;UBERON:0005340!1.07e-09!1;UBERON:0002316!1.07e-09!1;UBERON:0003544!1.07e-09!1;UBERON:0001020!1.07e-09!1;UBERON:0005970!1.07e-09!1;UBERON:0002437!1.07e-09!1;UBERON:0001882!1.17e-09!1;UBERON:0005403!1.17e-09!1;UBERON:0002308!4.15e-09!9;UBERON:0000125!4.15e-09!9;UBERON:0000483!4.31e-09!309;UBERON:0000119!5.70e-09!312;UBERON:0000475!4.12e-08!365;UBERON:0000349!1.21e-07!5;UBERON:0002037!6.46e-07!6;UBERON:0006215!6.46e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002680;9.75e-45;9!UBERON:0001895;9.75e-45;9!UBERON:0000988;5.04e-34;3!UBERON:0004733;5.97e-34;12!UBERON:0002028;5.97e-34;12!UBERON:0004732;1.86e-31;13!UBERON:0002037;8.34e-18;6!UBERON:0002298;8.34e-18;6!UBERON:0000073;1.92e-07;53!UBERON:0002616;1.92e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002680,9.75e-45,9;UBERON:0001895,9.75e-45,9;UBERON:0010092,9.75e-45,9;UBERON:0000988,4.27e-34,3;UBERON:0004733,5.98e-34,12;UBERON:0002028,5.98e-34,12;UBERON:0007277,5.98e-34,12;UBERON:0004732,1.86e-31,13;UBERON:0003076,1.82e-27,15;UBERON:0003057,1.82e-27,15;UBERON:0002298,7.67e-18,6;UBERON:0002037,9.07e-18,6;UBERON:0006215,9.07e-18,6;UBERON:0000073,1.34e-08,53;UBERON:0002616,1.34e-08,53;UBERON:0001049,3.28e-08,56;UBERON:0005068,3.28e-08,56;UBERON:0006241,3.28e-08,56;UBERON:0007135,3.28e-08,56;UBERON:0000955,6.59e-07,68;UBERON:0006238,6.59e-07,68 | |||
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|short_description=p9@GRIK1 | |||
}} |
Revision as of 10:03, 12 September 2013
Short description: | p9@GRIK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_GRIK1_5end |
Coexpression cluster: | C2230_pons_cerebellum_merkel_occipital_paracentral_medulla_postcentral |
Association with transcript: | 79bp_to_ENST00000399907, ENST00000399909_5end |
EntrezGene: | GRIK1 |
HGNC: | 4579 |
UniProt: | P39086E7EPZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 9.75e-45 | 9 |
metencephalon | 9.75e-45 | 9 |
future metencephalon | 9.75e-45 | 9 |
pons | 4.27e-34 | 3 |
segmental subdivision of hindbrain | 5.98e-34 | 12 |
hindbrain | 5.98e-34 | 12 |
presumptive hindbrain | 5.98e-34 | 12 |
segmental subdivision of nervous system | 1.86e-31 | 13 |
posterior neural tube | 1.82e-27 | 15 |
chordal neural plate | 1.82e-27 | 15 |
brainstem | 7.67e-18 | 6 |
cerebellum | 9.07e-18 | 6 |
rhombic lip | 9.07e-18 | 6 |
regional part of nervous system | 1.34e-08 | 53 |
regional part of brain | 1.34e-08 | 53 |
neural tube | 3.28e-08 | 56 |
neural rod | 3.28e-08 | 56 |
future spinal cord | 3.28e-08 | 56 |
neural keel | 3.28e-08 | 56 |
brain | 6.59e-07 | 68 |
future brain | 6.59e-07 | 68 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.