FFCP PHASE1:Hg19::chr3:16327836..16327853,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=92106|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=25128|TSSclassifier=S|UniProt=|association_with_transcript=-6bp_to_AL832787_5end|coexpression_cluster_id=C18|description=CAGE_peak_2_at_OXNAD1_5end|id=chr3:16327836..16327853,+|ontology_enrichment_celltype=CL:0000738!2.70e-29!140;CL:0002087!5.79e-21!119;CL:0000084!8.38e-21!25;CL:0000827!8.38e-21!25;CL:0002031!3.75e-20!124;CL:0000838!3.87e-20!52;CL:0000542!1.83e-19!53;CL:0000051!1.83e-19!53;CL:0000791!3.88e-19!18;CL:0000789!3.88e-19!18;CL:0002420!3.88e-19!18;CL:0002419!3.88e-19!18;CL:0000790!3.88e-19!18;CL:0000037!3.58e-18!172;CL:0000566!3.58e-18!172;CL:0000988!2.91e-16!182;CL:0002032!4.88e-16!165;CL:0000837!4.88e-16!165;CL:0000625!1.97e-12!11;CL:0000766!1.24e-07!76;CL:0000624!1.45e-07!6|ontology_enrichment_celltype_v019=CL:0000791;1.15e-30;18!CL:0000789;1.15e-30;18!CL:0002419;1.15e-30;18!CL:0000084;5.56e-30;25!CL:0000625;1.54e-19;11!CL:0000542;4.61e-12;53!CL:0000624;1.71e-11;6!CL:0000094;9.32e-09;8!CL:0002087;4.56e-08;104!CL:0000081;1.14e-07;11|ontology_enrichment_celltype_v019_2=CL:0000791,1.19e-30,18;CL:0000789,1.19e-30,18;CL:0002420,1.19e-30,18;CL:0002419,1.19e-30,18;CL:0000790,1.19e-30,18;CL:0000084,8.72e-30,25;CL:0000827,8.72e-30,25;CL:0000738,1.61e-25,136;CL:0000838,1.91e-21,52;CL:0000542,7.38e-21,53;CL:0000051,7.38e-21,53;CL:0000625,1.57e-19,11;CL:0002087,1.59e-18,115;CL:0000037,2.14e-17,168;CL:0000988,2.17e-16,177;CL:0002032,2.41e-14,161;CL:0000837,2.41e-14,161;CL:0002031,4.66e-14,120;CL:0000624,1.72e-11,6;CL:0000094,9.46e-09,8;CL:0000081,1.27e-07,11|ontology_enrichment_development_v019=CL:0000790;1.15e-30;18!CL:0000051;4.61e-12;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!6.04e-27!115;UBERON:0002390!8.53e-11!102;UBERON:0003061!8.53e-11!102;UBERON:0002193!2.78e-10!112;UBERON:0000178!4.30e-09!15;UBERON:0000179!4.30e-09!15;UBERON:0000463!4.30e-09!15|ontology_enrichment_uberon_v019=UBERON:0000178;4.87e-15;15!UBERON:0000179;4.87e-15;15!UBERON:0000463;4.87e-15;15!UBERON:0002390;2.20e-10;32!UBERON:0002193;4.68e-07;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.89e-15,15;UBERON:0000179,4.89e-15,15;UBERON:0000463,4.89e-15,15;UBERON:0007023,4.21e-10,114;UBERON:0002390,6.00e-09,98;UBERON:0003061,6.00e-09,98;UBERON:0002193,8.72e-09,108;UBERON:0004177,2.43e-08,7;UBERON:0005057,2.43e-08,7;UBERON:0002370,2.48e-07,4;UBERON:0005058,2.48e-07,4;UBERON:0009113,2.48e-07,4;UBERON:0003295,2.48e-07,4;UBERON:0005562,2.48e-07,4;UBERON:0003408,4.60e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0.534893840235659,0.57470412614962,0.708397031823113,6.29382842958246,14.9693465257913,5.72819656269481,0,0,0,0,0,0,12.7418943962332,12.6343001906189,15.4077718208255,3.35873211359887,13.9274276388161,3.60605794687861,0.145398238779565,1.13362783106643,0,0.232429036905685,0.411167888021826,0,0.28769239232215,1.2808035326455,0,0,0.645484683583826,0,0.188242339542605,1.09162460023138,0,1.22433556948361,1.28371610830437,0,0,0.398927315243264,0,0.580418477257168,1.13477044938228,0,0.75374599577023,0,0.217188844705117,3.02699751316684,1.84138817993782,0.316462387440884,0,0,0,0.112328631146495,0,0,0,0,0,0,1.63841583378639,0,0.426730222566507,0,0.574752439954483,0.661044872784862,1.90810750907073,0,2.93618594685469,1.91136614062614,0,11.2101712596307,0,184.317054596662,76.244087973338,126.239320385699,16.3842765482865,225.538208510445,239.09114189604,126.637373465142,5.34770193048833,87.4979545200266,103.899396559718,58.2228307094784,7.55738786381483,2.9913649938772,74.9836844992763,50.5720532548102,124.325523780338,494.683974708634,621.229802824314,238.340994275347,33.7661841238747,162.868709780817,173.531859968728,153.835972747858,174.892412463929,168.630614548812,135.914642356117,155.092372650106,184.300720062362,197.390547952706,156.746540853139,113.315663575104,75.6025287092747,44.1276323042787,95.8737553704129,0,0,0,0,0,0,0,0,0,0.221729397462564,0.351339142772504,0.589405839739707,0,0.370784442784429,0.97364218096405,1.39303789839414,0.26591592103773,0.953962497221368,2.85997455390064,4.45749001595478,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0,0,0,0,0,0,6.58902087180316,7.75560528296651,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,0.982827216677626,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0.148631162288728,0,0,0,0,0,0,0.492663237895943,0.176096868026452,0.414656231081544,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14861935834114,0,0,0,0,7.28553435957927,63.2468740248186,39.0285910495726,38.5029108839245,0,0,0,0.167516265334349,0,2.24702107184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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=92106 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=25128 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-6bp_to_AL832787_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_OXNAD1_5end | |||
|id=chr3:16327836..16327853,+ | |||
|ontology_enrichment_celltype=CL:0000738!2.70e-29!140;CL:0002087!5.79e-21!119;CL:0000084!8.38e-21!25;CL:0000827!8.38e-21!25;CL:0002031!3.75e-20!124;CL:0000838!3.87e-20!52;CL:0000542!1.83e-19!53;CL:0000051!1.83e-19!53;CL:0000791!3.88e-19!18;CL:0000789!3.88e-19!18;CL:0002420!3.88e-19!18;CL:0002419!3.88e-19!18;CL:0000790!3.88e-19!18;CL:0000037!3.58e-18!172;CL:0000566!3.58e-18!172;CL:0000988!2.91e-16!182;CL:0002032!4.88e-16!165;CL:0000837!4.88e-16!165;CL:0000625!1.97e-12!11;CL:0000766!1.24e-07!76;CL:0000624!1.45e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.15e-30;18!CL:0000789;1.15e-30;18!CL:0002419;1.15e-30;18!CL:0000084;5.56e-30;25!CL:0000625;1.54e-19;11!CL:0000542;4.61e-12;53!CL:0000624;1.71e-11;6!CL:0000094;9.32e-09;8!CL:0002087;4.56e-08;104!CL:0000081;1.14e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.19e-30,18;CL:0000789,1.19e-30,18;CL:0002420,1.19e-30,18;CL:0002419,1.19e-30,18;CL:0000790,1.19e-30,18;CL:0000084,8.72e-30,25;CL:0000827,8.72e-30,25;CL:0000738,1.61e-25,136;CL:0000838,1.91e-21,52;CL:0000542,7.38e-21,53;CL:0000051,7.38e-21,53;CL:0000625,1.57e-19,11;CL:0002087,1.59e-18,115;CL:0000037,2.14e-17,168;CL:0000988,2.17e-16,177;CL:0002032,2.41e-14,161;CL:0000837,2.41e-14,161;CL:0002031,4.66e-14,120;CL:0000624,1.72e-11,6;CL:0000094,9.46e-09,8;CL:0000081,1.27e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.15e-30;18!CL:0000051;4.61e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.04e-27!115;UBERON:0002390!8.53e-11!102;UBERON:0003061!8.53e-11!102;UBERON:0002193!2.78e-10!112;UBERON:0000178!4.30e-09!15;UBERON:0000179!4.30e-09!15;UBERON:0000463!4.30e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.87e-15;15!UBERON:0000179;4.87e-15;15!UBERON:0000463;4.87e-15;15!UBERON:0002390;2.20e-10;32!UBERON:0002193;4.68e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.89e-15,15;UBERON:0000179,4.89e-15,15;UBERON:0000463,4.89e-15,15;UBERON:0007023,4.21e-10,114;UBERON:0002390,6.00e-09,98;UBERON:0003061,6.00e-09,98;UBERON:0002193,8.72e-09,108;UBERON:0004177,2.43e-08,7;UBERON:0005057,2.43e-08,7;UBERON:0002370,2.48e-07,4;UBERON:0005058,2.48e-07,4;UBERON:0009113,2.48e-07,4;UBERON:0003295,2.48e-07,4;UBERON:0005562,2.48e-07,4;UBERON:0003408,4.60e-07,10 | |||
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| |||
|short_description=p2@OXNAD1 | |||
}} |
Revision as of 22:32, 12 September 2013
Short description: | p2@OXNAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_OXNAD1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -6bp_to_AL832787_5end |
EntrezGene: | OXNAD1 |
HGNC: | 25128 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.19e-30 | 18 |
alpha-beta T cell | 1.19e-30 | 18 |
immature T cell | 1.19e-30 | 18 |
mature T cell | 1.19e-30 | 18 |
immature alpha-beta T cell | 1.19e-30 | 18 |
T cell | 8.72e-30 | 25 |
pro-T cell | 8.72e-30 | 25 |
leukocyte | 1.61e-25 | 136 |
lymphoid lineage restricted progenitor cell | 1.91e-21 | 52 |
lymphocyte | 7.38e-21 | 53 |
common lymphoid progenitor | 7.38e-21 | 53 |
CD8-positive, alpha-beta T cell | 1.57e-19 | 11 |
nongranular leukocyte | 1.59e-18 | 115 |
hematopoietic stem cell | 2.14e-17 | 168 |
hematopoietic cell | 2.17e-16 | 177 |
hematopoietic oligopotent progenitor cell | 2.41e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.41e-14 | 161 |
hematopoietic lineage restricted progenitor cell | 4.66e-14 | 120 |
CD4-positive, alpha-beta T cell | 1.72e-11 | 6 |
granulocyte | 9.46e-09 | 8 |
blood cell | 1.27e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 4.89e-15 | 15 |
haemolymphatic fluid | 4.89e-15 | 15 |
organism substance | 4.89e-15 | 15 |
adult organism | 4.21e-10 | 114 |
hematopoietic system | 6.00e-09 | 98 |
blood island | 6.00e-09 | 98 |
hemolymphoid system | 8.72e-09 | 108 |
hemopoietic organ | 2.43e-08 | 7 |
immune organ | 2.43e-08 | 7 |
thymus | 2.48e-07 | 4 |
hemolymphoid system gland | 2.48e-07 | 4 |
thymic region | 2.48e-07 | 4 |
pharyngeal gland | 2.48e-07 | 4 |
thymus primordium | 2.48e-07 | 4 |
gland of gut | 4.60e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.