FFCP PHASE1:Hg19::chr6:34524049..34524089,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25803|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17257|TSSclassifier=S|UniProt=O95238|association_with_transcript=1bp_to_ENST00000374037,uc003ojq.1,uc011dsq.1_5end|coexpression_cluster_id=C37|description=CAGE_peak_2_at_SPDEF_5end|id=chr6:34524049..34524089,-|ontology_enrichment_celltype=CL:0002076!1.53e-21!43;CL:0002368!3.09e-20!13;CL:0000223!5.57e-16!59;CL:0002202!2.82e-13!9;CL:0002632!2.82e-13!9;CL:0000066!2.89e-13!254;CL:0000244!9.33e-09!4;CL:0000731!9.33e-09!4;CL:0000068!3.29e-07!3;CL:0000069!3.29e-07!3;CL:0000307!3.29e-07!3;CL:0000377!3.29e-07!3;CL:0002328!3.42e-07!3;CL:0002251!3.76e-07!21|ontology_enrichment_celltype_v019=CL:0002368;1.05e-24;13!CL:0002202;6.48e-15;9!CL:0002632;6.48e-15;9!CL:0002076;7.63e-13;42!CL:0000244;6.19e-12;4!CL:0000731;6.19e-12;4!CL:0000307;1.10e-09;3!CL:0002328;1.15e-09;3|ontology_enrichment_celltype_v019_2=CL:0002368,1.25e-24,13;CL:0002076,1.88e-16,42;CL:0002202,7.42e-15,9;CL:0002632,7.42e-15,9;CL:0000244,6.55e-12,4;CL:0000731,6.55e-12,4;CL:0000223,1.30e-10,58;CL:0000068,1.08e-09,3;CL:0000069,1.08e-09,3;CL:0000307,1.08e-09,3;CL:0000377,1.08e-09,3;CL:0002328,1.15e-09,3;CL:0000066,1.16e-09,253|ontology_enrichment_development_v019=CL:0000377;1.10e-09;3!UBERON:0009847;5.04e-09;3!UBERON:0003353;5.04e-09;3|ontology_enrichment_disease=DOID:5093!1.47e-08!4;DOID:1612!1.47e-08!4;DOID:305!8.64e-08!106;DOID:299!1.46e-07!25|ontology_enrichment_disease_v019=DOID:5093;1.29e-11;4!DOID:1612;1.29e-11;4!DOID:299;9.42e-07;25|ontology_enrichment_disease_v019_2=DOID:5093,1.26e-11,4;DOID:1612,1.26e-11,4;DOID:299,9.24e-07,25|ontology_enrichment_uberon=UBERON:0004119!8.62e-29!169;UBERON:0000925!8.62e-29!169;UBERON:0006595!8.62e-29!169;UBERON:0001007!1.88e-22!155;UBERON:0001555!1.88e-22!155;UBERON:0007026!1.88e-22!155;UBERON:0004921!1.46e-20!129;UBERON:0004185!1.46e-20!129;UBERON:0001004!2.33e-17!72;UBERON:0000077!2.46e-15!130;UBERON:0000065!4.35e-15!53;UBERON:0005911!2.60e-13!82;UBERON:0005178!6.57e-13!34;UBERON:0002224!6.57e-13!34;UBERON:0000915!1.13e-12!52;UBERON:0001041!1.29e-12!98;UBERON:0007196!1.42e-12!14;UBERON:0001558!1.42e-12!14;UBERON:0005181!2.15e-12!35;UBERON:0008947!7.25e-11!38;UBERON:0003258!7.25e-11!38;UBERON:0005153!5.13e-10!37;UBERON:0002294!3.88e-09!7;UBERON:0001173!3.88e-09!7;UBERON:0004912!3.88e-09!7;UBERON:0000161!1.85e-08!35;UBERON:0000072!1.86e-08!46;UBERON:0000464!3.29e-08!104;UBERON:0000466!6.81e-08!126;UBERON:0003126!1.82e-07!7;UBERON:0001005!1.82e-07!7;UBERON:0002048!1.86e-07!22;UBERON:0000117!1.86e-07!22;UBERON:0000171!1.86e-07!22;UBERON:0000170!1.86e-07!22;UBERON:0005597!1.86e-07!22;UBERON:0000118!1.86e-07!22;UBERON:0004815!3.42e-07!3;UBERON:0002031!3.42e-07!3;UBERON:0003104!3.86e-07!238;UBERON:0009142!3.86e-07!238;UBERON:0005409!5.44e-07!35;UBERON:0000365!5.97e-07!5;UBERON:0000166!6.16e-07!21;UBERON:0005157!6.26e-07!51;UBERON:0009569!7.62e-07!113|ontology_enrichment_uberon_v019=UBERON:0007196;6.00e-14;15!UBERON:0001558;6.00e-14;15!UBERON:0004921;3.71e-12;33!UBERON:0005178;7.87e-11;34!UBERON:0002224;7.87e-11;34!UBERON:0005181;1.88e-10;35!UBERON:0003126;2.17e-10;7!UBERON:0001005;2.17e-10;7!UBERON:0000915;7.85e-10;52!UBERON:0004815;1.15e-09;3!UBERON:0002031;1.15e-09;3!UBERON:0000365;1.57e-09;5!UBERON:0002294;2.78e-09;7!UBERON:0001173;2.78e-09;7!UBERON:0000065;4.20e-09;44!UBERON:0002108;3.40e-08;4!UBERON:0005910;6.35e-08;6!UBERON:0000160;1.22e-07;17!UBERON:0003937;1.56e-07;12!UBERON:0005399;1.56e-07;12!UBERON:0001555;2.76e-07;54!UBERON:0005409;2.84e-07;22!UBERON:0001829;3.78e-07;2!UBERON:0003127;9.72e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.40e-27,160;UBERON:0000925,1.40e-27,160;UBERON:0006595,1.40e-27,160;UBERON:0004921,1.04e-20,118;UBERON:0001007,1.13e-19,145;UBERON:0001555,1.13e-19,145;UBERON:0007026,1.13e-19,145;UBERON:0001004,5.65e-15,74;UBERON:0000065,5.84e-15,54;UBERON:0007196,6.60e-14,15;UBERON:0001558,6.60e-14,15;UBERON:0000915,7.17e-14,52;UBERON:0005178,2.98e-12,34;UBERON:0002224,2.98e-12,34;UBERON:0005181,8.38e-12,35;UBERON:0001041,1.46e-11,87;UBERON:0005911,4.74e-11,82;UBERON:0005153,1.04e-10,37;UBERON:0003126,2.13e-10,7;UBERON:0001005,2.13e-10,7;UBERON:0004815,1.15e-09,3;UBERON:0002031,1.15e-09,3;UBERON:0000365,1.64e-09,5;UBERON:0008947,4.71e-09,38;UBERON:0003258,4.71e-09,38;UBERON:0000161,2.44e-08,36;UBERON:0011216,2.78e-08,223;UBERON:0002108,3.33e-08,4;UBERON:0000072,3.68e-08,47;UBERON:0005910,6.58e-08,6;UBERON:0005157,9.71e-08,47;UBERON:0000160,1.33e-07,17;UBERON:0003937,1.53e-07,12;UBERON:0005399,1.53e-07,12;UBERON:0002294,3.66e-07,9;UBERON:0001173,3.66e-07,9;UBERON:0004912,3.66e-07,9;UBERON:0001829,3.79e-07,2;UBERON:0003127,9.59e-07,2;UBERON:0009569,9.66e-07,112|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,2.79120467188971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.0991640812414,61.446007430763,19.5969625388397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=25803 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17257 | |||
|TSSclassifier=S | |||
|UniProt=O95238 | |||
|association_with_transcript=1bp_to_ENST00000374037,uc003ojq.1,uc011dsq.1_5end | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_2_at_SPDEF_5end | |||
|id=chr6:34524049..34524089,- | |||
|ontology_enrichment_celltype=CL:0002076!1.53e-21!43;CL:0002368!3.09e-20!13;CL:0000223!5.57e-16!59;CL:0002202!2.82e-13!9;CL:0002632!2.82e-13!9;CL:0000066!2.89e-13!254;CL:0000244!9.33e-09!4;CL:0000731!9.33e-09!4;CL:0000068!3.29e-07!3;CL:0000069!3.29e-07!3;CL:0000307!3.29e-07!3;CL:0000377!3.29e-07!3;CL:0002328!3.42e-07!3;CL:0002251!3.76e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.05e-24;13!CL:0002202;6.48e-15;9!CL:0002632;6.48e-15;9!CL:0002076;7.63e-13;42!CL:0000244;6.19e-12;4!CL:0000731;6.19e-12;4!CL:0000307;1.10e-09;3!CL:0002328;1.15e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.25e-24,13;CL:0002076,1.88e-16,42;CL:0002202,7.42e-15,9;CL:0002632,7.42e-15,9;CL:0000244,6.55e-12,4;CL:0000731,6.55e-12,4;CL:0000223,1.30e-10,58;CL:0000068,1.08e-09,3;CL:0000069,1.08e-09,3;CL:0000307,1.08e-09,3;CL:0000377,1.08e-09,3;CL:0002328,1.15e-09,3;CL:0000066,1.16e-09,253 | |||
|ontology_enrichment_development_v019=CL:0000377;1.10e-09;3!UBERON:0009847;5.04e-09;3!UBERON:0003353;5.04e-09;3 | |||
|ontology_enrichment_disease=DOID:5093!1.47e-08!4;DOID:1612!1.47e-08!4;DOID:305!8.64e-08!106;DOID:299!1.46e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:5093;1.29e-11;4!DOID:1612;1.29e-11;4!DOID:299;9.42e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,1.26e-11,4;DOID:1612,1.26e-11,4;DOID:299,9.24e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.62e-29!169;UBERON:0000925!8.62e-29!169;UBERON:0006595!8.62e-29!169;UBERON:0001007!1.88e-22!155;UBERON:0001555!1.88e-22!155;UBERON:0007026!1.88e-22!155;UBERON:0004921!1.46e-20!129;UBERON:0004185!1.46e-20!129;UBERON:0001004!2.33e-17!72;UBERON:0000077!2.46e-15!130;UBERON:0000065!4.35e-15!53;UBERON:0005911!2.60e-13!82;UBERON:0005178!6.57e-13!34;UBERON:0002224!6.57e-13!34;UBERON:0000915!1.13e-12!52;UBERON:0001041!1.29e-12!98;UBERON:0007196!1.42e-12!14;UBERON:0001558!1.42e-12!14;UBERON:0005181!2.15e-12!35;UBERON:0008947!7.25e-11!38;UBERON:0003258!7.25e-11!38;UBERON:0005153!5.13e-10!37;UBERON:0002294!3.88e-09!7;UBERON:0001173!3.88e-09!7;UBERON:0004912!3.88e-09!7;UBERON:0000161!1.85e-08!35;UBERON:0000072!1.86e-08!46;UBERON:0000464!3.29e-08!104;UBERON:0000466!6.81e-08!126;UBERON:0003126!1.82e-07!7;UBERON:0001005!1.82e-07!7;UBERON:0002048!1.86e-07!22;UBERON:0000117!1.86e-07!22;UBERON:0000171!1.86e-07!22;UBERON:0000170!1.86e-07!22;UBERON:0005597!1.86e-07!22;UBERON:0000118!1.86e-07!22;UBERON:0004815!3.42e-07!3;UBERON:0002031!3.42e-07!3;UBERON:0003104!3.86e-07!238;UBERON:0009142!3.86e-07!238;UBERON:0005409!5.44e-07!35;UBERON:0000365!5.97e-07!5;UBERON:0000166!6.16e-07!21;UBERON:0005157!6.26e-07!51;UBERON:0009569!7.62e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0007196;6.00e-14;15!UBERON:0001558;6.00e-14;15!UBERON:0004921;3.71e-12;33!UBERON:0005178;7.87e-11;34!UBERON:0002224;7.87e-11;34!UBERON:0005181;1.88e-10;35!UBERON:0003126;2.17e-10;7!UBERON:0001005;2.17e-10;7!UBERON:0000915;7.85e-10;52!UBERON:0004815;1.15e-09;3!UBERON:0002031;1.15e-09;3!UBERON:0000365;1.57e-09;5!UBERON:0002294;2.78e-09;7!UBERON:0001173;2.78e-09;7!UBERON:0000065;4.20e-09;44!UBERON:0002108;3.40e-08;4!UBERON:0005910;6.35e-08;6!UBERON:0000160;1.22e-07;17!UBERON:0003937;1.56e-07;12!UBERON:0005399;1.56e-07;12!UBERON:0001555;2.76e-07;54!UBERON:0005409;2.84e-07;22!UBERON:0001829;3.78e-07;2!UBERON:0003127;9.72e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.40e-27,160;UBERON:0000925,1.40e-27,160;UBERON:0006595,1.40e-27,160;UBERON:0004921,1.04e-20,118;UBERON:0001007,1.13e-19,145;UBERON:0001555,1.13e-19,145;UBERON:0007026,1.13e-19,145;UBERON:0001004,5.65e-15,74;UBERON:0000065,5.84e-15,54;UBERON:0007196,6.60e-14,15;UBERON:0001558,6.60e-14,15;UBERON:0000915,7.17e-14,52;UBERON:0005178,2.98e-12,34;UBERON:0002224,2.98e-12,34;UBERON:0005181,8.38e-12,35;UBERON:0001041,1.46e-11,87;UBERON:0005911,4.74e-11,82;UBERON:0005153,1.04e-10,37;UBERON:0003126,2.13e-10,7;UBERON:0001005,2.13e-10,7;UBERON:0004815,1.15e-09,3;UBERON:0002031,1.15e-09,3;UBERON:0000365,1.64e-09,5;UBERON:0008947,4.71e-09,38;UBERON:0003258,4.71e-09,38;UBERON:0000161,2.44e-08,36;UBERON:0011216,2.78e-08,223;UBERON:0002108,3.33e-08,4;UBERON:0000072,3.68e-08,47;UBERON:0005910,6.58e-08,6;UBERON:0005157,9.71e-08,47;UBERON:0000160,1.33e-07,17;UBERON:0003937,1.53e-07,12;UBERON:0005399,1.53e-07,12;UBERON:0002294,3.66e-07,9;UBERON:0001173,3.66e-07,9;UBERON:0004912,3.66e-07,9;UBERON:0001829,3.79e-07,2;UBERON:0003127,9.59e-07,2;UBERON:0009569,9.66e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,2.79120467188971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.0991640812414,61.446007430763,19.5969625388397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.458426764241994,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,3.27295344709002,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.109750285408626,2.24803506515239,0,1.85176890317059,0,0,0,0,0,0,0,0,7.90204397959275,6.00940313466411,0,0,0,5.62403003920662,0,0.708875486211932,0,0,0,0,0,0.207328115540772,0.288239906833923,2.14612136824846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6344399806234,1.56537681191024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,2.87132768998086,0,0,0,0,0,0,0,0,0.0852266274161009,0,20.9911842508442,18.4502464670502,10.7194678495451,8.29493803015509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.6364107194577,32.8448115012536,49.0009431875952,0.0941438007767792,34.8709351863696,5.05414427002877,25.2755187515905,18.3778720165568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49712432326576,0,0,0,0,0,0,0,0,0,0,0,0.63337622438398,0.996239941255349,1.10513566212459,0,0,0,0,3.50486569474575,2.50629644545853,0,0,0,0,0,0,0,7.812832832557,32.7100399985772,2.89999830173917,1.365521379426,1.01701460117107,0,0,0,0,0,0,0,0,0,0,0,0,2.46240827212151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,9.95261931078505,1.23840590304675,4.888241159469,0,0,0,0,0,0,0,0.391329237864179,0,0.789168805698781,2.41981432097328,0,0,0,0,0,0,0,0,0,0,1.90915712168644,0,0,0,0,0,0,0,0.0969890164884194,0,2.25980740780532,0,0,0,0.391102765469606,3.60714691131902,7.25740182113799,0,0.576361668616424,0,0,0.576219191952599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0,0.105600336519406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27717094710824,2.11444506695002,1.49502377594773,0.471612915298998,1.65695622138878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24964734331792,0,0,2.11739237728355,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.18461219419332,0,0,0,0,0,1.81843360035278,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733714394086716,0,0,0,0,0.225630985047772,0,1.56302802246618,0,0,7.8363725695034,0,0,0,0,0,150.222628118868,3.47347824872506,0,8.56008265185288,0,0,0,0,0,0,0,0,0,3.30942754475111,23.6922886030107,8.71273330640706,0,0,0,0,0,0,0,0,0,0,0,0,0,111.428885934452,0,0,5.50403165248208,0,0,0,0,0.098150233615243,2.56027642462766,0,0,0,0.971421986118279,0,0,0,0,0,0,1.46630900405095,1.5299169235277,0,0,0,0,0,0,0,0,0,0,0.71421575442263,0,0,5.11235471772562,79.8188953123901,0,0,0,0,3.7031878836078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69114760182158,2.3806443146374,0,0,0,0,0,3.9189014621453,6.16019941953506,4.44523549896278,11.6907194790062,10.9777917660184,0,0,0,0,2.34640942403454,2.93379466038879,1.62758471326295,0,0,0 | |||
|short_description=p2@SPDEF | |||
}} |
Revision as of 20:38, 13 September 2013
Short description: | p2@SPDEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SPDEF_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | 1bp_to_ENST00000374037, uc003ojq.1, uc011dsq.1_5end |
EntrezGene: | SPDEF |
HGNC: | 17257 |
UniProt: | O95238 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.25e-24 | 13 |
endo-epithelial cell | 1.88e-16 | 42 |
epithelial cell of tracheobronchial tree | 7.42e-15 | 9 |
epithelial cell of lower respiratory tract | 7.42e-15 | 9 |
transitional epithelial cell | 6.55e-12 | 4 |
urothelial cell | 6.55e-12 | 4 |
endodermal cell | 1.30e-10 | 58 |
duct epithelial cell | 1.08e-09 | 3 |
branched duct epithelial cell | 1.08e-09 | 3 |
tracheal epithelial cell | 1.08e-09 | 3 |
tracheoblast | 1.08e-09 | 3 |
bronchial epithelial cell | 1.15e-09 | 3 |
epithelial cell | 1.16e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 1.26e-11 | 4 |
breast cancer | 1.26e-11 | 4 |
adenocarcinoma | 9.24e-07 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.