FFCP PHASE1:Hg19::chr7:45960863..45960877,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3486|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5472|TSSclassifier=S|UniProt=P17936,B3KWK7,B3KRZ1,B3KTS0,B3KPF0|association_with_transcript=0bp_to_ENST00000275521,ENST00000381086,ENST00000438491,ENST00000442142,NM_000598,NM_001013398,uc003tnr.2,uc003tns.2,uc003tnt.2_5end|coexpression_cluster_id=C223|description=CAGE_peak_1_at_IGFBP3_5end|id=chr7:45960863..45960877,-|ontology_enrichment_celltype=CL:0000055!2.05e-14!180;CL:0000359!2.65e-10!32;CL:0000680!1.10e-09!57;CL:0000056!1.10e-09!57;CL:0000355!1.10e-09!57;CL:0000192!4.46e-09!42;CL:0000514!4.46e-09!42;CL:0000187!1.85e-08!54;CL:0000183!4.09e-08!59;CL:0000222!4.18e-08!119;CL:0000057!5.88e-08!75;CL:0000499!2.26e-07!27;CL:0000393!3.18e-07!60;CL:0000211!3.18e-07!60|ontology_enrichment_celltype_v019=CL:0000359;7.15e-10;32!CL:0000499;5.29e-08;28!CL:0000192;3.64e-07;43!CL:0000349;6.16e-07;19|ontology_enrichment_celltype_v019_2=CL:0000359,2.02e-10,32;CL:0000680,1.12e-09,58;CL:0000056,1.12e-09,58;CL:0000355,1.12e-09,58;CL:0000192,5.04e-09,43;CL:0000514,5.04e-09,43;CL:0000187,1.92e-08,55;CL:0000057,3.18e-08,76;CL:0000499,5.37e-08,28;CL:0000222,1.39e-07,121;CL:0000393,3.19e-07,61;CL:0000211,3.19e-07,61;CL:0000349,6.20e-07,19|ontology_enrichment_development_v019=CL:0000514;3.64e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002100!1.04e-13!216;UBERON:0000475!3.17e-13!365;UBERON:0003104!1.28e-11!238;UBERON:0009142!1.28e-11!238;UBERON:0005256!2.34e-11!143;UBERON:0003914!6.01e-11!118;UBERON:0000481!1.28e-10!347;UBERON:0002385!3.39e-10!63;UBERON:0001015!3.39e-10!63;UBERON:0000383!3.39e-10!63;UBERON:0004872!3.57e-10!84;UBERON:0001134!4.09e-10!61;UBERON:0002036!4.09e-10!61;UBERON:0003082!4.09e-10!61;UBERON:0000468!7.09e-10!659;UBERON:0000486!7.02e-09!82;UBERON:0004290!1.17e-08!70;UBERON:0001637!1.79e-08!42;UBERON:0003509!1.79e-08!42;UBERON:0004572!1.79e-08!42;UBERON:0000477!6.28e-08!286;UBERON:0004573!9.24e-08!33;UBERON:0004571!9.24e-08!33;UBERON:0003103!1.38e-07!69;UBERON:0000914!1.50e-07!83;UBERON:0002329!1.50e-07!83;UBERON:0003077!1.50e-07!83;UBERON:0003059!1.50e-07!83;UBERON:0007282!1.50e-07!83;UBERON:0009618!1.50e-07!83;UBERON:0007285!1.50e-07!83;UBERON:0000119!1.73e-07!312;UBERON:0000483!3.22e-07!309;UBERON:0005631!3.51e-07!14;UBERON:0000158!3.51e-07!14;UBERON:0000467!3.89e-07!625;UBERON:0009569!6.08e-07!113;UBERON:0000480!6.49e-07!626;UBERON:0000478!8.80e-07!24|ontology_enrichment_uberon_v019=UBERON:0004573;6.11e-07;33!UBERON:0004571;6.11e-07;33!UBERON:0000478;7.63e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.91e-14,160;UBERON:0009142,4.91e-14,160;UBERON:0002100,5.50e-14,199;UBERON:0003914,5.68e-11,117;UBERON:0005256,8.38e-11,122;UBERON:0002385,3.37e-10,64;UBERON:0001015,3.37e-10,64;UBERON:0000383,3.37e-10,64;UBERON:0001134,4.11e-10,62;UBERON:0002036,4.11e-10,62;UBERON:0003082,4.11e-10,62;UBERON:0004872,1.25e-09,83;UBERON:0007503,1.11e-08,78;UBERON:0000486,1.15e-08,83;UBERON:0001637,1.49e-08,42;UBERON:0003509,1.49e-08,42;UBERON:0004572,1.49e-08,42;UBERON:0002329,1.50e-08,71;UBERON:0003059,1.50e-08,71;UBERON:0007282,1.50e-08,71;UBERON:0004290,1.50e-08,71;UBERON:0009618,1.50e-08,71;UBERON:0007524,1.66e-08,73;UBERON:0003077,2.10e-08,72;UBERON:0007285,2.10e-08,72;UBERON:0004573,7.90e-08,33;UBERON:0004571,7.90e-08,33;UBERON:0003103,1.01e-07,68;UBERON:0005631,2.95e-07,14;UBERON:0000158,2.95e-07,14;UBERON:0000119,4.86e-07,309;UBERON:0000478,7.47e-07,24;UBERON:0000483,8.89e-07,306|phase1_expression=869.694401568155,455.820015363903,1128.76286800054,372.272669873645,152.860694294132,343.701378495545,68.3909671054438,78.333264304927,201.374119342075,523.413284748214,25.8186432149798,49.3677501014189,39.565046734268,20.2976818854476,25.8489953067774,63.1985637664669,74.1314269469492,81.7947301233858,88.3158365810818,18.7144008276718,9.9960338709684,71.7811312184821,14.0255633694218,5.33810257784248,41.4290710662849,4.04991050464142,2.70931945184821,3.22714203386085,0.393364276848904,6.1412703695554,37.6203179658065,0.919421224478927,0,0.369754010166788,0,0,0,7.75593571944628,0,1.30206522429511,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0,0.697287110717054,0,0,0.575384784644301,0,0,0.344745680736619,0,0,0,0,0,1.22433556948361,0.641858054152187,0,0.329851300186716,0,0,0,0,0.622822248995575,1.25624332628372,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0.587237189370939,0,0,1.12101712596307,0.526768169550154,2.75393678159366,0.786021525498329,5.34563897398724,0.167186495390678,0,0.473447805734733,0,0.334231370655521,0.294605907474837,0,0,1.28091319725675,2.60118695119756,0,0,0,0.296573126324121,0,0,0.566546713487831,2.68254345521345,0.68725489096526,1.01207876807801,3.82278497188916,7.81300144627702,1.90090408889675,0.752875595388864,1.79181255616186,6.24653632761729,4.2619905367923,7.39015197228942,5.24177532384304,3.20928234940209,3.18613688542158,9.752274652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7,64.8342691561742,4450.26765501579,5629.34813837311,39.097669664631,0,0,5.38960644137996,77.7660023788345,5.59483643240199,4.0972434502548,0.691259661814092,5.16272830584333,1.18332000730565,1.53384128566484,15.2419338068734,52.6945797651315,39.3962109793686,43.9547911929619,353.463164481024,0,100.216534335425,18.1280074412611,54.3086248269547,60.3103504295864,202.055773112602,0,19.0992744154914,5.94600453887843,22.2503781616751,0.109940516745429,0.603851374266694,38.3555565796485,78.9000013419286,0.940634592723046,26.2308704276679,0,9.42280642151737,15.7434592173356,25.359343655004,3469.91168192522,31.8605481951704,182.35136507725,0,1221.3089400627,2.11736923029415,55.7677498489719,56.9662382832283,22.4777348868225,13.9039395656908,5.36423311456828,5.43931921527318,2.18175345170189,65.5993282239097,320.65970565974,1798.78754663348,1465.7387924754,0.126166424835079,0.98339014767326,0.126698501011437,2.2437542543236,0,5.69748377116038,0.50141507858475,64.1845573908488,8.30688803484153,2.48750831837634,11.2741965489466,35.8233089593648,80.703842266208,5.49005733606052,71.7583697260117,7.06430734257865,15.9117895695412,60.2309223095493,32.2220786887503,154.004985488376,31.7228169698707,130.606136020064,203.58813820616,92.0670967990122,86.9827868903381,48.268070571735,557.994155486118,300.340406276422,150.723700677474,80.5654433065162,89.8771645150442,62.1936022196271,0|short_description=p1@IGFBP3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3486 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5472 | |||
|TSSclassifier=S | |||
|UniProt=P17936,B3KWK7,B3KRZ1,B3KTS0,B3KPF0 | |||
|association_with_transcript=0bp_to_ENST00000275521,ENST00000381086,ENST00000438491,ENST00000442142,NM_000598,NM_001013398,uc003tnr.2,uc003tns.2,uc003tnt.2_5end | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_1_at_IGFBP3_5end | |||
|id=chr7:45960863..45960877,- | |||
|ontology_enrichment_celltype=CL:0000055!2.05e-14!180;CL:0000359!2.65e-10!32;CL:0000680!1.10e-09!57;CL:0000056!1.10e-09!57;CL:0000355!1.10e-09!57;CL:0000192!4.46e-09!42;CL:0000514!4.46e-09!42;CL:0000187!1.85e-08!54;CL:0000183!4.09e-08!59;CL:0000222!4.18e-08!119;CL:0000057!5.88e-08!75;CL:0000499!2.26e-07!27;CL:0000393!3.18e-07!60;CL:0000211!3.18e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000359;7.15e-10;32!CL:0000499;5.29e-08;28!CL:0000192;3.64e-07;43!CL:0000349;6.16e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.02e-10,32;CL:0000680,1.12e-09,58;CL:0000056,1.12e-09,58;CL:0000355,1.12e-09,58;CL:0000192,5.04e-09,43;CL:0000514,5.04e-09,43;CL:0000187,1.92e-08,55;CL:0000057,3.18e-08,76;CL:0000499,5.37e-08,28;CL:0000222,1.39e-07,121;CL:0000393,3.19e-07,61;CL:0000211,3.19e-07,61;CL:0000349,6.20e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;3.64e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!1.04e-13!216;UBERON:0000475!3.17e-13!365;UBERON:0003104!1.28e-11!238;UBERON:0009142!1.28e-11!238;UBERON:0005256!2.34e-11!143;UBERON:0003914!6.01e-11!118;UBERON:0000481!1.28e-10!347;UBERON:0002385!3.39e-10!63;UBERON:0001015!3.39e-10!63;UBERON:0000383!3.39e-10!63;UBERON:0004872!3.57e-10!84;UBERON:0001134!4.09e-10!61;UBERON:0002036!4.09e-10!61;UBERON:0003082!4.09e-10!61;UBERON:0000468!7.09e-10!659;UBERON:0000486!7.02e-09!82;UBERON:0004290!1.17e-08!70;UBERON:0001637!1.79e-08!42;UBERON:0003509!1.79e-08!42;UBERON:0004572!1.79e-08!42;UBERON:0000477!6.28e-08!286;UBERON:0004573!9.24e-08!33;UBERON:0004571!9.24e-08!33;UBERON:0003103!1.38e-07!69;UBERON:0000914!1.50e-07!83;UBERON:0002329!1.50e-07!83;UBERON:0003077!1.50e-07!83;UBERON:0003059!1.50e-07!83;UBERON:0007282!1.50e-07!83;UBERON:0009618!1.50e-07!83;UBERON:0007285!1.50e-07!83;UBERON:0000119!1.73e-07!312;UBERON:0000483!3.22e-07!309;UBERON:0005631!3.51e-07!14;UBERON:0000158!3.51e-07!14;UBERON:0000467!3.89e-07!625;UBERON:0009569!6.08e-07!113;UBERON:0000480!6.49e-07!626;UBERON:0000478!8.80e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;6.11e-07;33!UBERON:0004571;6.11e-07;33!UBERON:0000478;7.63e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.91e-14,160;UBERON:0009142,4.91e-14,160;UBERON:0002100,5.50e-14,199;UBERON:0003914,5.68e-11,117;UBERON:0005256,8.38e-11,122;UBERON:0002385,3.37e-10,64;UBERON:0001015,3.37e-10,64;UBERON:0000383,3.37e-10,64;UBERON:0001134,4.11e-10,62;UBERON:0002036,4.11e-10,62;UBERON:0003082,4.11e-10,62;UBERON:0004872,1.25e-09,83;UBERON:0007503,1.11e-08,78;UBERON:0000486,1.15e-08,83;UBERON:0001637,1.49e-08,42;UBERON:0003509,1.49e-08,42;UBERON:0004572,1.49e-08,42;UBERON:0002329,1.50e-08,71;UBERON:0003059,1.50e-08,71;UBERON:0007282,1.50e-08,71;UBERON:0004290,1.50e-08,71;UBERON:0009618,1.50e-08,71;UBERON:0007524,1.66e-08,73;UBERON:0003077,2.10e-08,72;UBERON:0007285,2.10e-08,72;UBERON:0004573,7.90e-08,33;UBERON:0004571,7.90e-08,33;UBERON:0003103,1.01e-07,68;UBERON:0005631,2.95e-07,14;UBERON:0000158,2.95e-07,14;UBERON:0000119,4.86e-07,309;UBERON:0000478,7.47e-07,24;UBERON:0000483,8.89e-07,306 | |||
|phase1_expression=869.694401568155,455.820015363903,1128.76286800054,372.272669873645,152.860694294132,343.701378495545,68.3909671054438,78.333264304927,201.374119342075,523.413284748214,25.8186432149798,49.3677501014189,39.565046734268,20.2976818854476,25.8489953067774,63.1985637664669,74.1314269469492,81.7947301233858,88.3158365810818,18.7144008276718,9.9960338709684,71.7811312184821,14.0255633694218,5.33810257784248,41.4290710662849,4.04991050464142,2.70931945184821,3.22714203386085,0.393364276848904,6.1412703695554,37.6203179658065,0.919421224478927,0,0.369754010166788,0,0,0,7.75593571944628,0,1.30206522429511,0.223915474239924,0.32389366601898,0.257575567634187,0,0,0,0.697287110717054,0,0,0.575384784644301,0,0,0.344745680736619,0,0,0,0,0,1.22433556948361,0.641858054152187,0,0.329851300186716,0,0,0,0,0.622822248995575,1.25624332628372,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0.587237189370939,0,0,1.12101712596307,0.526768169550154,2.75393678159366,0.786021525498329,5.34563897398724,0.167186495390678,0,0.473447805734733,0,0.334231370655521,0.294605907474837,0,0,1.28091319725675,2.60118695119756,0,0,0,0.296573126324121,0,0,0.566546713487831,2.68254345521345,0.68725489096526,1.01207876807801,3.82278497188916,7.81300144627702,1.90090408889675,0.752875595388864,1.79181255616186,6.24653632761729,4.2619905367923,7.39015197228942,5.24177532384304,3.20928234940209,3.18613688542158,9.75227465255847,67.7407868300673,743.265071996442,11468.8257443147,16264.9058347602,14741.175081162,3195.45893525132,6904.8621747241,11.7223173283444,72.2837835727959,127.887447969192,59.1370525872173,2.5500670180478,2.22470665670658,0,0.174129737299267,0.132957960518865,11.2090593423511,18.8758320557442,5.94332002127304,0.198762407366705,2.58070378531837,5.20710752411391,8.47961912886015,4.19499436209906,4.40188867104108,7.31482382878837,11.6287541626198,14.2306505074684,52.5511362040532,3.62546385398232,0.760272105718513,8.05404789908959,0,30.7853940195069,2.23249320710199,2.46982309888787,1.80178368773316,1.53316637465883,0.949265659568129,3.29763139074733,2.63560834872127,0,15.6993858771312,392.607841839302,302.646922878346,62.4971333438393,145.1393300989,116.685897743259,456.95224411598,719.488231218212,727.915935379039,60.3749408675547,3.63718814588158,3.75962377160955,35.1149232136241,11.5235184896,4.68642863667593,0.312160076830321,1.71141546463335,16.2899061801463,1.64408298101271,0,0.561803226808994,0.816616685019573,1.84251475967652,1.75653827998801,19.0080457165129,58.1077283804609,2.73048408581408,5.03032699271367,0.168336113954066,1.62654075833553,0,107.988494736686,271.241699282132,202.220427288279,64.769776584372,1637.10981529655,1730.02840681921,3135.32054575456,2413.93277690293,1059.48305310039,1201.89311931286,3768.86634071469,1063.62844578446,874.399684316596,2414.02418309647,4934.70301631503,83.0860732048693,4023.67872158331,2186.92504412916,662.981915934007,5.60456474173561,1.63647672354501,14.0534251740612,2.5614478287215,1.98794652482228,10.8060366868652,11.2990549966754,7.31730467539322,3.6497735907583,231.545307848128,356.355479758858,46.9658732598434,67.7977174926689,51.2534431985406,26.6190300089649,29.5023207636678,25.7881801975326,32.0955460651266,32.4640371697685,28.7097449124427,18.6067205261027,12.1657308377715,14.2356448070164,12.548642728619,5.60967095213783,23.0481446345584,44.1026134156626,8.87285243752816,33.4161253670393,424.77794290393,0,0.245976877086227,105.514203333593,0,1.1240175325762,0.100528972411631,0.0925884451585296,4.23550796903422,1.03993478527958,60.6191636506148,3.24605133930215,364.43658690799,19.7782033432671,7.87075371380238,1.71228737011138,1.58040879591855,0.858486162094873,0,0,0.148631162288728,2.81201501960331,3.02367830757947,1.70130116690864,20.1506676081409,1.74380363108377,2.30029607499127,0,0,0.621984346622316,0.288239906833923,0.50496973370552,0.507983154337352,0.763976851116555,0,59.8753561079468,4.62723717164956,0,4.28739648945867,17.3803180735309,301.248407563797,20.608058315687,156.548047782669,67.9547247118577,6.762422020448,171.264147080657,183.053088964004,10.80270971901,140.430640703045,3.72991050622539,23.7343469472525,136.198022953252,2.46972101034231,8.79487697593085,19.1911652320975,2.37585561880029,291.19043823956,210.039563522671,111.969750123904,0,0,0,373.335524855886,1095.78286785745,69.892083469952,1045.46581544659,432.527658968557,849.107087683585,0,1.18218456121156,0.431255149719035,5.26206448746968,5.59008173289419,13.0139853857622,12.3726210044431,3.35032530668698,16.5864075429822,0,0,0,124.286481111489,51.5175636691467,6.51036056879365,636.182865422739,433.404013788306,350.414766205403,446.308791122237,38.2201546654203,86.4148515412742,369.398864514243,235.80008748008,326.88653582444,40.0533462697862,13.7060810223918,4.80400793335198,1.03384013061444,0.431428401637234,2.13455115606889,544.417118317482,257.97493124127,719.991288417969,1220.44230666056,786.339151128032,859.942529342937,945.923199805584,1310.99397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| |||
|short_description=p1@IGFBP3 | |||
}} |
Revision as of 01:26, 14 September 2013
Short description: | p1@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | 0bp_to_ENST00000275521, ENST00000381086, ENST00000438491, ENST00000442142, NM_000598, NM_001013398, uc003tnr.2, uc003tns.2, uc003tnt.2_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | P17936B3KWK7B3KRZ1B3KTS0B3KPF0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.02e-10 | 32 |
muscle precursor cell | 1.12e-09 | 58 |
myoblast | 1.12e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.12e-09 | 58 |
smooth muscle cell | 5.04e-09 | 43 |
smooth muscle myoblast | 5.04e-09 | 43 |
muscle cell | 1.92e-08 | 55 |
fibroblast | 3.18e-08 | 76 |
stromal cell | 5.37e-08 | 28 |
mesodermal cell | 1.39e-07 | 121 |
electrically responsive cell | 3.19e-07 | 61 |
electrically active cell | 3.19e-07 | 61 |
extraembryonic cell | 6.20e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 4.91e-14 | 160 |
entire embryonic mesenchyme | 4.91e-14 | 160 |
trunk | 5.50e-14 | 199 |
epithelial tube | 5.68e-11 | 117 |
trunk mesenchyme | 8.38e-11 | 122 |
muscle tissue | 3.37e-10 | 64 |
musculature | 3.37e-10 | 64 |
musculature of body | 3.37e-10 | 64 |
skeletal muscle tissue | 4.11e-10 | 62 |
striated muscle tissue | 4.11e-10 | 62 |
myotome | 4.11e-10 | 62 |
splanchnic layer of lateral plate mesoderm | 1.25e-09 | 83 |
epithelial vesicle | 1.11e-08 | 78 |
multilaminar epithelium | 1.15e-08 | 83 |
artery | 1.49e-08 | 42 |
arterial blood vessel | 1.49e-08 | 42 |
arterial system | 1.49e-08 | 42 |
somite | 1.50e-08 | 71 |
presomitic mesoderm | 1.50e-08 | 71 |
presumptive segmental plate | 1.50e-08 | 71 |
dermomyotome | 1.50e-08 | 71 |
trunk paraxial mesoderm | 1.50e-08 | 71 |
dense mesenchyme tissue | 1.66e-08 | 73 |
paraxial mesoderm | 2.10e-08 | 72 |
presumptive paraxial mesoderm | 2.10e-08 | 72 |
systemic artery | 7.90e-08 | 33 |
systemic arterial system | 7.90e-08 | 33 |
compound organ | 1.01e-07 | 68 |
extraembryonic membrane | 2.95e-07 | 14 |
membranous layer | 2.95e-07 | 14 |
cell layer | 4.86e-07 | 309 |
extraembryonic structure | 7.47e-07 | 24 |
epithelium | 8.89e-07 | 306 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.