FFCP PHASE1:Hg19::chr15:39888129..39888145,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C142 | |||
|description=CAGE_peak_at_chr15:39888129..39888145,+ | |||
|id=chr15:39888129..39888145,+ | |||
|ontology_enrichment_celltype=CL:0002371!1.18e-17!591;CL:0000144!1.02e-14!625;CL:0000055!5.16e-14!180;CL:0000057!1.55e-13!75;CL:0000548!2.21e-11!679;CL:0000004!2.21e-11!679;CL:0000255!2.21e-11!679;CL:0000012!6.54e-11!682;CL:0000222!2.04e-10!119;CL:0000115!2.42e-09!35;CL:0000220!3.84e-09!246;CL:0002139!4.51e-09!24;CL:0002321!8.58e-09!248;CL:0002334!3.73e-08!12;CL:0002078!6.98e-08!44;CL:0002620!5.24e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.82e-12;24!CL:0000115;2.42e-11;36!CL:0002334;1.13e-10;12!CL:0002620;1.31e-10;23!CL:0002138;8.43e-08;6!CL:0002078;3.65e-07;45!CL:0000349;5.41e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.34e-16,76;CL:0000115,8.27e-13,36;CL:0002139,9.64e-12,24;CL:0002620,1.06e-10,23;CL:0002334,1.98e-10,12;CL:0002078,6.83e-10,45;CL:0005020,1.10e-07,6;CL:0002138,1.10e-07,6;CL:0005022,1.10e-07,6;CL:0000213,3.42e-07,58;CL:0000215,3.42e-07,58;CL:0000723,4.06e-07,433;CL:0000048,6.60e-07,427;CL:0000349,7.07e-07,19 | |||
|ontology_enrichment_development_v019=CL:0005022;8.43e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;8.31e-08;5!DOID:450;8.31e-08;5!DOID:66;8.31e-08;5!DOID:423;8.31e-08;5!DOID:0080000;8.31e-08;5!DOID:11722;8.31e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.98e-08,5;DOID:450,5.98e-08,5;DOID:66,5.98e-08,5;DOID:423,5.98e-08,5;DOID:0080000,5.98e-08,5;DOID:11722,5.98e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0002049!1.09e-14!79;UBERON:0007798!1.09e-14!79;UBERON:0004872!1.25e-13!84;UBERON:0004535!1.98e-13!110;UBERON:0000055!2.14e-13!69;UBERON:0001009!2.37e-13!113;UBERON:0001981!5.61e-12!60;UBERON:0007500!5.61e-12!60;UBERON:0004537!5.61e-12!60;UBERON:0006965!5.61e-12!60;UBERON:0000468!6.96e-11!659;UBERON:0003914!1.57e-10!118;UBERON:0000467!1.27e-09!625;UBERON:0000480!1.76e-09!626;UBERON:0003102!2.04e-08!95;UBERON:0002199!2.15e-08!45;UBERON:0002416!2.15e-08!45;UBERON:0001637!6.88e-08!42;UBERON:0003509!6.88e-08!42;UBERON:0004572!6.88e-08!42;UBERON:0000490!7.55e-08!138;UBERON:0002097!8.47e-08!40;UBERON:0000914!1.20e-07!83;UBERON:0002329!1.20e-07!83;UBERON:0003077!1.20e-07!83;UBERON:0003059!1.20e-07!83;UBERON:0007282!1.20e-07!83;UBERON:0009618!1.20e-07!83;UBERON:0007285!1.20e-07!83;UBERON:0000486!3.08e-07!82;UBERON:0002100!3.72e-07!216;UBERON:0005256!8.85e-07!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.45e-09;6!UBERON:0002358;1.45e-09;6!UBERON:0003684;1.45e-09;6!UBERON:0001178;1.45e-09;6!UBERON:0005631;5.11e-09;10!UBERON:0000158;5.11e-09;10!UBERON:0002097;8.58e-09;41!UBERON:0000055;4.19e-08;65!UBERON:0001637;5.01e-08;42!UBERON:0003509;5.01e-08;42!UBERON:0004572;5.01e-08;42!UBERON:0002199;7.93e-08;46!UBERON:0002416;7.93e-08;46!UBERON:0007500;3.64e-07;56!UBERON:0001981;3.64e-07;56!UBERON:0004537;3.64e-07;56!UBERON:0000487;3.69e-07;22!UBERON:0004573;5.09e-07;33!UBERON:0004571;5.09e-07;33!UBERON:0000305;8.71e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,2.96e-14,68;UBERON:0002049,7.18e-12,78;UBERON:0007798,7.18e-12,78;UBERON:0002097,2.62e-11,41;UBERON:0002199,3.19e-11,46;UBERON:0002416,3.19e-11,46;UBERON:0007500,3.90e-11,59;UBERON:0001981,3.90e-11,59;UBERON:0004537,3.90e-11,59;UBERON:0006965,3.90e-11,59;UBERON:0003688,1.52e-09,6;UBERON:0002358,1.52e-09,6;UBERON:0003684,1.52e-09,6;UBERON:0001178,1.52e-09,6;UBERON:0004872,2.68e-09,83;UBERON:0001637,3.31e-09,42;UBERON:0003509,3.31e-09,42;UBERON:0004572,3.31e-09,42;UBERON:0004871,3.98e-08,8;UBERON:0004923,5.33e-08,66;UBERON:0004535,1.22e-07,109;UBERON:0005631,2.15e-07,14;UBERON:0000158,2.15e-07,14;UBERON:0000487,3.11e-07,22;UBERON:0001009,3.54e-07,112;UBERON:0004573,4.37e-07,33;UBERON:0004571,4.37e-07,33;UBERON:0000305,6.57e-07,7 | |||
|phase1_expression=9.6289541013395,15.2011371962598,5.63817616383885,4.00293193412522,4.91657203870017,8.72338524100369,0,0.631719873426831,0.261185628199839,1.72013755551056,0.697801167972428,3.49506195408276,1.84636884759917,0.247532705920093,1.32558950291166,4.03395087871065,1.80808358407193,2.19093027116212,4.87932798790507,0,0.408001382488506,0.626909442956176,0,0.273748850145768,0.251085279189606,0,0,0,0.393364276848904,0,0.309632246632152,0,1.204823675113,0.739508020333575,0,0,0,0.553995408531877,1.60435557976113,0,0,0,0,0,0,0,1.62700325833979,0,0,1.7261543539329,0.256160706529101,0.236482229888585,4.13694816883942,0,0,2.07066573496865,0.272906150057846,0.224723484445085,2.14258724659632,0,0,0.659702600373432,0,0.426224750532694,6.67481248845743,0,0.622822248995575,3.26623264833766,1.0429658368404,0.217188844705117,7.87019353423379,0.736555271975129,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1903433156981,0,0.639312809217652,0.722878304769133,2.50668955317945,0.724232594804119,0.795285947051099,2.91980922181582,0.283604451492204,0.665188192387692,0.263504357079378,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.596287222100115,0,2.08284300964557,2.26123176769604,0.419499436209906,3.02629846134074,2.92592953151535,2.32575083252396,1.06729878806013,2.00832367658802,2.41697590265488,3.04108842287405,3.1728067481262,2.57364156242108,3.24056779152704,1.87529429396568,0.22452937262617,0.675668882899933,0,0,1.64881569537367,0,0,1.74437620857014,7.45457927542978,1.77282716330412,2.25095607382472,2.29469296599051,0,0.560677600142307,3.20246987189115,1.97334038733728,0.622422070799533,0.538842688278752,0.817309515567294,0.151357427644931,1.15235184896,0,0,0,0,0,0.161872944368132,0.140450806702248,0.61246251376468,0.491337269247072,0,4.75201142912821,3.4617370098998,0,0,0.336672227908132,0,0.277064115484183,1.31693286264251,4.90380473278431,1.95309476578576,0.453728732640084,7.17558542755448,5.97960688691989,5.51022943014861,3.90118424909723,2.98852334791473,4.89517026086695,5.02515512095292,4.89451363499672,2.82567314967476,2.01947019395292,3.68199594569197,2.58633690910099,7.10019185033229,1.20902517873168,2.54340888465731,0.57978255948989,1.36373060295417,1.72082757233402,0,0,0,0,0,0,1.56449532329816,6.43240938192885,1.38134921352481,1.85747171212792,0.721879481669586,0.236613600079688,0.337169380156203,0,0.220587945464788,0,0,0.134831308160164,0,0,2.21446636387394,1.40241773803446,0,0,0,0,0,0,0,0.343135620597051,1.09750285408626,1.1240175325762,0.201057944823262,0.925884451585296,0,0,0,0,0.469634776943287,2.88732895522148,6.01881166349594,3.99533719692656,2.37061319387782,0,0,0,0,0.93733833986777,2.01578553838631,0.992425680696705,1.16426079513703,1.45316969256981,1.91691339582606,0,0,0,0,0,0,0,0,0,0.411309970813294,0,0,0,0,0.1466765716419,1.16344544182,0,0,2.12750493267896,5.2003718455683,0.514414748524284,0,0,0.285955987316295,0.542621605391443,0.823240336780769,0,0,0,0,0,0,0,0,0,1.19812427745791,0,0,1.30303176000821,0.410952645100767,0.716243852959582,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.736148950314839,0,0.813795071099207,7.27898015357825,10.7057393278297,5.36188211115378,7.73133338951907,0.902838299183157,0,0,3.98535359121262,1.65932251687533,1.99832313276591,0.195801157462741,0.343143423810856,0.206768026122887,0.215714200818617,0.213455115606889,0,3.32870879020994,0.907170879989041,13.8940372378515,16.4204311418227,14.3136648160868,4.22859192543813,7.67560873600055,10.7772127166217,4.45254199334973,1.69630663182921,1.06537035187876,0.410635780069046,1.03850885836724,0.464841513839837,0,4.61164881697555,0.184161977871793,0.574072240823034,0,0.524497659837696,0,0,0,0,0,1.13733384070897,1.19065593693561,3.88648648983851,4.62681758070868,0,0,0,0.831076008928724,0.447749509444357,0.219259876645935,0,0,0.328014645699706,0.325378394664303,0,0,0,0.574265537996172,1.95018073810956,4.82051789532479,0,0,0,0.413509717453592,0.107420244868274,0.145016693914229,0,0.0890320356467374,0.165284915360978,0.384380134730212,2.16941611240793,0.10115778085555,0,3.46293581513704,0,0,0.532306030317022,0,1.48259375283136,0,0,0.632758849437452,0.953150969619124,0.511795582622668,0.855877976067841,0,0.78494864019923,0.899362287916574,0.274537029736055,0.235624804691373,0.606547444719948,0,1.26377536871694,0.48763373908959,0.243713489631284,3.16950440270266,0.818999468447914,0.989838023675989,0,0,1.32687795048244,4.38450885253763,0.578775534266688,0.655894752046633,2.23201414658974,2.78841148289775,0.563391205064483,0.143411352204052,0.294747123039363,3.92338156629375,0,0.422215270595328,0,0,0.349934720244983,0.962221127255121,0.670302275535787,0,0.0941438007767792,2.58303223602738,1.68471475667626,1.7737206141467,1.83778720165568,0.507447609232169,0,0,0,0.411362273086194,0,0,0,0,1.92495971052672,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0,0,0,0,2.86493381685228,0.296964680832639,5.83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| |||
|short_description=p@chr15:39888129..39888145,+ | |||
}} |
Revision as of 22:57, 11 January 2014
Short description: | p@chr15:39888129..39888145, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr15:39888129..39888145, + |
Coexpression cluster: | C142_Preadipocyte_Fibroblast_hepatic_Ewing_Adipocyte_Olfactory_Hair |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.34e-16 | 76 |
endothelial cell | 8.27e-13 | 36 |
endothelial cell of vascular tree | 9.64e-12 | 24 |
skin fibroblast | 1.06e-10 | 23 |
preadipocyte | 1.98e-10 | 12 |
meso-epithelial cell | 6.83e-10 | 45 |
lymphangioblast | 1.10e-07 | 6 |
endothelial cell of lymphatic vessel | 1.10e-07 | 6 |
vascular lymphangioblast | 1.10e-07 | 6 |
lining cell | 3.42e-07 | 58 |
barrier cell | 3.42e-07 | 58 |
somatic stem cell | 4.06e-07 | 433 |
multi fate stem cell | 6.60e-07 | 427 |
extraembryonic cell | 7.07e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
vessel | 2.96e-14 | 68 |
vasculature | 7.18e-12 | 78 |
vascular system | 7.18e-12 | 78 |
skin of body | 2.62e-11 | 41 |
integument | 3.19e-11 | 46 |
integumental system | 3.19e-11 | 46 |
epithelial tube open at both ends | 3.90e-11 | 59 |
blood vessel | 3.90e-11 | 59 |
blood vasculature | 3.90e-11 | 59 |
vascular cord | 3.90e-11 | 59 |
omentum | 1.52e-09 | 6 |
peritoneum | 1.52e-09 | 6 |
abdominal cavity | 1.52e-09 | 6 |
visceral peritoneum | 1.52e-09 | 6 |
splanchnic layer of lateral plate mesoderm | 2.68e-09 | 83 |
artery | 3.31e-09 | 42 |
arterial blood vessel | 3.31e-09 | 42 |
arterial system | 3.31e-09 | 42 |
somatic layer of lateral plate mesoderm | 3.98e-08 | 8 |
organ component layer | 5.33e-08 | 66 |
cardiovascular system | 1.22e-07 | 109 |
extraembryonic membrane | 2.15e-07 | 14 |
membranous layer | 2.15e-07 | 14 |
simple squamous epithelium | 3.11e-07 | 22 |
circulatory system | 3.54e-07 | 112 |
systemic artery | 4.37e-07 | 33 |
systemic arterial system | 4.37e-07 | 33 |
amnion | 6.57e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.98e-08 | 5 |
myotonic disease | 5.98e-08 | 5 |
muscle tissue disease | 5.98e-08 | 5 |
myopathy | 5.98e-08 | 5 |
muscular disease | 5.98e-08 | 5 |
myotonic dystrophy | 5.98e-08 | 5 |