FFCP PHASE1:Hg19::chr19:4229351..4229373,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10148 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3129 | |||
|TSSclassifier=not | |||
|UniProt=Q14213 | |||
|association_with_transcript=-166bp_to_ENST00000221847,NM_005755,uc002lzu.2_5end | |||
|description=CAGE_peak_3_at_EBI3_5end | |||
|id=chr19:4229351..4229373,+ | |||
|ontology_enrichment_celltype=CL:0000945!1.99e-08!24;CL:0000826!1.99e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0002619;3.19e-16;3!CL:0002138;9.10e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002619,3.13e-16,3;CL:0005020,9.03e-08,6;CL:0002138,9.03e-08,6;CL:0005022,9.03e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0004872;4.85e-18;7!CL:0005022;9.10e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.96e-56!115;UBERON:0001049!1.29e-26!57;UBERON:0005068!1.29e-26!57;UBERON:0006241!1.29e-26!57;UBERON:0007135!1.29e-26!57;UBERON:0005743!8.76e-26!86;UBERON:0001017!3.28e-25!82;UBERON:0002616!1.28e-23!59;UBERON:0002780!1.79e-22!41;UBERON:0001890!1.79e-22!41;UBERON:0006240!1.79e-22!41;UBERON:0000073!9.23e-22!94;UBERON:0001016!9.23e-22!94;UBERON:0003080!1.08e-21!42;UBERON:0000955!1.19e-21!69;UBERON:0006238!1.19e-21!69;UBERON:0003075!3.67e-19!86;UBERON:0007284!3.67e-19!86;UBERON:0002346!1.18e-17!90;UBERON:0001893!2.01e-17!34;UBERON:0002020!2.20e-17!34;UBERON:0003528!2.20e-17!34;UBERON:0002791!8.16e-17!33;UBERON:0001869!2.21e-15!32;UBERON:0003056!6.02e-14!61;UBERON:0000153!1.18e-11!129;UBERON:0007811!1.18e-11!129;UBERON:0000033!1.72e-11!123;UBERON:0002619!2.48e-11!22;UBERON:0002308!7.92e-11!9;UBERON:0000125!7.92e-11!9;UBERON:0004111!1.40e-10!241;UBERON:0000477!5.16e-10!286;UBERON:0001950!1.23e-09!20;UBERON:0000956!1.86e-09!25;UBERON:0000203!1.86e-09!25;UBERON:0000025!1.91e-09!194;UBERON:0009663!3.17e-09!7;UBERON:0002420!6.37e-09!9;UBERON:0007245!6.37e-09!9;UBERON:0010009!6.37e-09!9;UBERON:0010011!6.37e-09!9;UBERON:0000454!6.37e-09!9;UBERON:0004121!1.82e-08!169;UBERON:0000924!6.01e-08!173;UBERON:0006601!6.01e-08!173;UBERON:0002298!2.40e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002106;3.35e-16;3!UBERON:0004177;6.68e-10;5!UBERON:0005057;6.68e-10;5!UBERON:0002405;3.34e-08;27!UBERON:0002465;4.81e-08;10!UBERON:0001896;3.31e-07;3!UBERON:0005290;3.31e-07;3!UBERON:0000059;5.27e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002106,3.46e-16,3;UBERON:0004854,3.46e-16,3;UBERON:0009034,3.46e-16,3;UBERON:0002095,3.46e-16,3;UBERON:0004782,3.46e-16,3;UBERON:0003281,3.46e-16,3;UBERON:0009664,3.46e-16,3;UBERON:0002296,3.46e-16,3;UBERON:0005602,3.46e-16,3;UBERON:0001179,3.46e-16,3;UBERON:0006293,3.46e-16,3;UBERON:0007023,3.22e-15,114;UBERON:0005409,8.28e-11,25;UBERON:0011216,1.98e-08,223;UBERON:0001017,3.75e-08,81;UBERON:0002465,4.78e-08,10;UBERON:0000955,2.88e-07,68;UBERON:0006238,2.88e-07,68;UBERON:0004177,3.55e-07,7;UBERON:0005057,3.55e-07,7;UBERON:0001016,4.39e-07,89;UBERON:0000059,4.49e-07,11;UBERON:0001896,4.83e-07,3;UBERON:0005290,4.83e-07,3;UBERON:0010096,4.83e-07,3;UBERON:0003887,6.85e-07,12;UBERON:0000073,7.06e-07,53;UBERON:0002616,7.06e-07,53 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45185470921107,0.821005894499457,1.25937250101887,0,0,0,0,0,0,0.154934401160603,0.568676929949686,0,0,0,0,9.1805344438369,4.53451132426571,5.92423805558629,0,0,0,0,0.411167888021826,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0.632924774881769,0,0.212604299965044,0,0,0,0,0.285012743741249,0,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0,0.569212969109448,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0,0,0,0.402829317109147,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,2.53510069643662,0.982827216677626,1.77236972004421,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,1.85194205030644,2.66355813128438,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00451418286425,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0.328014645699706,0,3.19427136107939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44773882019626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,0,0.844016498463076,0,0,0,0.597743964753209,1.65770349318689,0,0,0.861593638227486,0,0,0,0,0.295930216910801,0,0,1.93866549219044,1.29875337426592,0,0,0,0,0,0,0,0,0,0,0.885741385813839,1.32656082487949,0,0.221158519862449,0.591095237907095,0.438770794307945,0,0,0.153900517007594,0,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.632994193584081,0.163232808159148,0,0,0,1.41532103205343,1.22206028986725,0.296521128680622,0.370691816839509,0.522109747527277,0.943615861729479,0,0.468528891450678,0,0,0,0.394584402849391,0,0,2.71702292402498,0,0,0,0,0,0,0,0.138674673013139,0.173559738335131,0,0,0.873633341210151,0,0,0,0.0821154570532092,0.193978032976839,0,0,0,0,0.443175571691151,0,0,0.213452994739353,0,0,0,0,0,0.248505071130865,0,0.135904206073614,0,0,0,0.600420288709789,1.77976992559591,0,0,0.262887354279314,0.558564802544508,0,0,0,0.429226048136571,0,0.134366944973453,0,0,0,0,0,0,0.677386656526276,0.795229689809303,0.544813624446302,0,0.275078873194468,0.415440338029185,0,0,0.546746009922222,0,1.65491985328316,0.209818352539992,0.211200673038813,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,1.02586563574658,3.97520666736664,0.646414781807753,0.26446520348538,0,0,0.427149650270779,0.78602152549833,0.828478110694391,14.8849806543585,0.395223263795889,0.365377795142688,0,0,0.2506898940227,0,0,0,0.886068179966986,0.244052529803926,0.625954653532499,0.573409195690071,1.33114861844223,1.05563885000352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829550616910385,0.389720617678777,0.265729680626726,0.654261577023377,0.327609848846413,0,0,0.39997479170986,0,0.688859918643263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449604575675217,0,1.59633859057151,1.23069818544453,0.252071696221718,0.414943514785307,0.807378228159255,0,0,0,0,0,0,0,0,0.376051641746286,0,0,0,0,0,0.202612753855184,0,1.03343398250592,0.253663240775627,0,0,0.496211178389294,0,0,0,0.672567444437648,0.606965604236632,1.82129753081038,8.33802279528805,0.806637912890455,0,0.543757863814654,0.394636641377094,0,0,0.549451649953598,0.785577949580009,0,1.82631744101899,0,0,0.929195074296532,0,0,0,0,0,0,0,0.430227358820278,0,0,0.846774100381858,0,0,0,0,0,0,0.647428837187895,0.410651227424988,0,0,0,0,0,0,0,0,1.389134845943,0.874238242015829,0,0,0,0.392616934229891,0.594092800654172,0,0,11.4660379935421,5.60783625370121,3.39799930144758,0,0,0,0.730336388246517,0,1.57673541466596,0,0.339957450954573,0,0,0,0,0,0,0,0.126698501011437,0.101988829741982,0,0,0,0.757786982182394,0,0.829169439458779,1.75836092965222,0,0,0.452122368852043,0.558672428662721,0,0.25458863311266,0,0.217716747896961,0.342233301085281,0.336760265072938,0.215166616178029,0,0,0.106727345877715,0,0,0,0.366724332548599,0,0.665756774185513,1.40891655513718,0.961705476909699 | |||
|short_description=p3@EBI3 | |||
}} |
Revision as of 20:38, 20 January 2014
Short description: | p3@EBI3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_EBI3_5end |
Coexpression cluster: | NA |
Association with transcript: | -166bp_to_ENST00000221847, NM_005755, uc002lzu.2_5end |
EntrezGene: | EBI3 |
HGNC: | 3129 |
UniProt: | Q14213 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult endothelial progenitor cell | 3.13e-16 | 3 |
lymphangioblast | 9.03e-08 | 6 |
endothelial cell of lymphatic vessel | 9.03e-08 | 6 |
vascular lymphangioblast | 9.03e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
spleen | 3.46e-16 | 3 |
gastrointestinal system mesentery | 3.46e-16 | 3 |
stomach region | 3.46e-16 | 3 |
mesentery | 3.46e-16 | 3 |
gastrointestinal system serosa | 3.46e-16 | 3 |
mesentery of stomach | 3.46e-16 | 3 |
gut mesentery | 3.46e-16 | 3 |
dorsal mesentery | 3.46e-16 | 3 |
dorsal mesogastrium | 3.46e-16 | 3 |
peritoneal cavity | 3.46e-16 | 3 |
spleen primordium | 3.46e-16 | 3 |
adult organism | 3.22e-15 | 114 |
gastrointestinal system | 8.28e-11 | 25 |
organ system subdivision | 1.98e-08 | 223 |
central nervous system | 3.75e-08 | 81 |
lymphoid system | 4.78e-08 | 10 |
brain | 2.88e-07 | 68 |
future brain | 2.88e-07 | 68 |
hemopoietic organ | 3.55e-07 | 7 |
immune organ | 3.55e-07 | 7 |
nervous system | 4.39e-07 | 89 |
large intestine | 4.49e-07 | 11 |
medulla oblongata | 4.83e-07 | 3 |
myelencephalon | 4.83e-07 | 3 |
future myelencephalon | 4.83e-07 | 3 |
intraembryonic coelom | 6.85e-07 | 12 |
regional part of nervous system | 7.06e-07 | 53 |
regional part of brain | 7.06e-07 | 53 |