FFCP PHASE1:Hg19::chr1:12538686..12538696,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23595 | |||
|TSSclassifier=weak | |||
|UniProt=F5GZY2 | |||
|association_with_transcript=82bp_to_ENST00000543710_5end | |||
|description=CAGE_peak_15_at_VPS13D_5end | |||
|id=chr1:12538686..12538696,+ | |||
|ontology_enrichment_celltype=CL:0000064!1.44e-10!3;CL:0005012!1.44e-10!3;CL:0000067!1.44e-10!3;CL:0002304!1.44e-10!3;CL:0002622!6.30e-10!3 | |||
|ontology_enrichment_celltype_v019=CL:0002591;2.21e-40;1!CL:0000746;1.40e-14;3!CL:0000737;2.80e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002591,3.30e-40,1;CL:0000746,1.40e-14,3;CL:0000513,1.40e-14,3;CL:0000737,2.80e-11,4 | |||
|ontology_enrichment_development_v019=CL:0000513;1.40e-14;3 | |||
|ontology_enrichment_disease=DOID:1749!1.27e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0002367!1.62e-16!11;UBERON:0010147!1.62e-16!11;UBERON:0009846!1.62e-16!11;UBERON:0003353!1.62e-16!11;UBERON:0004902!1.62e-16!11;UBERON:0003820!1.62e-16!11;UBERON:0009847!1.62e-16!11;UBERON:0000162!7.43e-16!14;UBERON:0001353!7.43e-16!14;UBERON:0000163!7.43e-16!14;UBERON:0006866!7.43e-16!14;UBERON:0000164!7.43e-16!14;UBERON:0000931!7.43e-16!14;UBERON:0003937!5.03e-15!12;UBERON:0005399!5.03e-15!12;UBERON:0004122!1.10e-14!15;UBERON:0001046!3.77e-14!19;UBERON:0003101!3.49e-12!22;UBERON:0000079!3.49e-12!22;UBERON:0000161!7.07e-12!35;UBERON:0001778!1.44e-10!3;UBERON:0001775!1.44e-10!3;UBERON:0007625!5.86e-10!11;UBERON:0005153!1.97e-09!37;UBERON:0000344!5.13e-09!12;UBERON:0005911!8.25e-09!82;UBERON:0005157!1.09e-08!51;UBERON:0003343!2.83e-08!4;UBERON:0004785!2.83e-08!4;UBERON:0000488!5.13e-08!4;UBERON:0003929!6.64e-08!54;UBERON:0003064!1.04e-07!37;UBERON:0001007!1.43e-07!155;UBERON:0001555!1.43e-07!155;UBERON:0007026!1.43e-07!155;UBERON:0007497!2.15e-07!2;UBERON:0003643!2.15e-07!2;UBERON:0003504!2.15e-07!2;UBERON:0003469!2.15e-07!2;UBERON:0003496!2.15e-07!2;UBERON:0004797!2.15e-07!2;UBERON:0002012!2.15e-07!2;UBERON:0008886!2.15e-07!2;UBERON:0007303!2.15e-07!2;UBERON:0002061!2.15e-07!2;UBERON:0005432!2.15e-07!2;UBERON:0004363!2.15e-07!2;UBERON:0006562!5.15e-07!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0000078;5.69e-21;2!UBERON:0002012;5.69e-21;2!UBERON:0008886;5.69e-21;2!UBERON:0003343;3.42e-11;4!UBERON:0004785;3.42e-11;4!UBERON:0000974;6.78e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000078,6.96e-21,2;UBERON:0007497,6.96e-21,2;UBERON:0003643,6.96e-21,2;UBERON:0003504,6.96e-21,2;UBERON:0003469,6.96e-21,2;UBERON:0003496,6.96e-21,2;UBERON:0002012,6.96e-21,2;UBERON:0008886,6.96e-21,2;UBERON:0007303,6.96e-21,2;UBERON:0002061,6.96e-21,2;UBERON:0005432,6.96e-21,2;UBERON:0004363,6.96e-21,2;UBERON:0004145,2.09e-14,3;UBERON:0003343,3.10e-11,4;UBERON:0004785,3.10e-11,4;UBERON:0003498,3.49e-09,5;UBERON:0005985,3.49e-09,5;UBERON:0010188,7.25e-08,6;UBERON:0002539,7.25e-08,6;UBERON:0003351,7.25e-08,6;UBERON:0008816,7.25e-08,6;UBERON:0000948,1.31e-07,24;UBERON:0005498,1.31e-07,24;UBERON:0004140,1.31e-07,24;UBERON:0009881,1.31e-07,24;UBERON:0004141,1.31e-07,24;UBERON:0003084,1.31e-07,24;UBERON:0007005,1.31e-07,24;UBERON:0004139,1.31e-07,24;UBERON:0004291,1.31e-07,24;UBERON:0007100,7.24e-07,27 | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,0,0,0,0,0,0,0.283604451492204,0.443458794925128,0.351339142772504,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0,0.799783929456456,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.0920809889358963,0.34444334449382,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0.223874754722178,0,0,0.256450125116389,0.328014645699706,0,0,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0.136499911407986,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0.865554558968364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347119476670262,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0.771656153083659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57036349601641,0.353909170043221,0,0.462102664601353,0,0.690359926060101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,3.61427462524672,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0.803892390468535,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0.0673520530145875,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p15@VPS13D | |||
}} |
Revision as of 16:25, 10 January 2014
Short description: | p15@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_15_at_VPS13D_5end |
Coexpression cluster: | NA |
Association with transcript: | 82bp_to_ENST00000543710_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | F5GZY2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the pulmonary artery | 3.30e-40 | 1 |
cardiac muscle cell | 1.40e-14 | 3 |
cardiac muscle myoblast | 1.40e-14 | 3 |
striated muscle cell | 2.80e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
mixed ectoderm/mesoderm/endoderm-derived structure | 6.96e-21 | 2 |
developing epithelial placode | 6.96e-21 | 2 |
respiratory system arterial blood vessel | 6.96e-21 | 2 |
respiratory system blood vessel | 6.96e-21 | 2 |
respiratory system artery | 6.96e-21 | 2 |
head blood vessel | 6.96e-21 | 2 |
pulmonary artery | 6.96e-21 | 2 |
pulmonary vascular system | 6.96e-21 | 2 |
pharyngeal vasculature | 6.96e-21 | 2 |
truncus arteriosus | 6.96e-21 | 2 |
aortic sac | 6.96e-21 | 2 |
pharyngeal arch artery | 6.96e-21 | 2 |
outflow tract | 2.09e-14 | 3 |
mucosa of oral region | 3.10e-11 | 4 |
respiratory system mucosa | 3.10e-11 | 4 |
heart blood vessel | 3.49e-09 | 5 |
coronary vessel | 3.49e-09 | 5 |
protuberance | 7.25e-08 | 6 |
pharyngeal arch | 7.25e-08 | 6 |
pharyngeal epithelium | 7.25e-08 | 6 |
embryonic head | 7.25e-08 | 6 |
heart | 1.31e-07 | 24 |
primitive heart tube | 1.31e-07 | 24 |
primary heart field | 1.31e-07 | 24 |
anterior lateral plate mesoderm | 1.31e-07 | 24 |
heart tube | 1.31e-07 | 24 |
heart primordium | 1.31e-07 | 24 |
cardiac mesoderm | 1.31e-07 | 24 |
cardiogenic plate | 1.31e-07 | 24 |
heart rudiment | 1.31e-07 | 24 |
primary circulatory organ | 7.24e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.53e-11 | 4 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |