FFCP PHASE1:Hg19::chr1:161059882..161059905,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81607 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19688 | |||
|TSSclassifier=not | |||
|UniProt=Q96NY8 | |||
|association_with_transcript=-493bp_to_ENST00000368012_5end | |||
|coexpression_cluster_id=C981 | |||
|description=CAGE_peak_3_at_PVRL4_5end | |||
|id=chr1:161059882..161059905,- | |||
|ontology_enrichment_celltype=CL:0002541!8.55e-08!3;CL:0000039!4.71e-07!7;CL:0000586!4.71e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002541;9.47e-22;3!CL:0000039;1.90e-20;7!CL:0000586;1.90e-20;7!CL:0000349;3.11e-13;19!CL:0002537;4.81e-13;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,9.47e-22,3;CL:0000039,1.90e-20,7;CL:0000586,1.90e-20,7;CL:0000349,3.07e-13,19;CL:0002537,4.66e-13,5 | |||
|ontology_enrichment_development_v019=UBERON:0003124;8.86e-17;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;1.12e-16;1!DOID:10165;1.12e-16;1!DOID:1798;1.12e-16;1!DOID:3095;6.62e-07;22!DOID:2994;6.62e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.04e-16,1;DOID:10165,1.04e-16,1;DOID:1798,1.04e-16,1;DOID:3095,6.62e-07,22;DOID:2994,6.62e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0003408!2.11e-11!10;UBERON:0001829!1.06e-10!2;UBERON:0003127!2.18e-10!2;UBERON:0005631!8.16e-09!14;UBERON:0000158!8.16e-09!14;UBERON:0000476!8.55e-08!3;UBERON:0000920!8.55e-08!3;UBERON:0001044!8.63e-08!6;UBERON:0003293!8.63e-08!6;UBERON:0003294!8.63e-08!6;UBERON:0010047!8.63e-08!6;UBERON:0000167!8.63e-08!6;UBERON:0003124!4.26e-07!7;UBERON:0001004!7.33e-07!72 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;8.44e-25;10!UBERON:0000158;8.44e-25;10!UBERON:0003124;9.47e-22;3!UBERON:0000920;9.47e-22;3!UBERON:0000996;2.63e-16;1!UBERON:0000478;5.07e-16;24!UBERON:0000305;1.38e-09;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.19e-27,14;UBERON:0000158,2.19e-27,14;UBERON:0000920,9.47e-22,3;UBERON:0003124,1.37e-20,7;UBERON:0000996,2.63e-16,1;UBERON:0000478,4.99e-16,24;UBERON:0000305,1.35e-09,7;UBERON:0004871,1.65e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0.234004265139238,0.445893486866185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.66725564062472,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.70719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,4.05865624054073,0,1.53580351049616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,10.1448117930746,44.8788222048861,2.7161842980502,18.8210684241832,0,37.3124343213044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,1.10043013569766,0.414239055347196,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76194727859129,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,7.09618961301111,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0.143444410785353,0.665320713092027,0,0,0,0,0,0,0,1.33151354837103,0,0 | |||
|short_description=p3@PVRL4 | |||
}} |
Revision as of 21:51, 10 January 2014
Short description: | p3@PVRL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PVRL4_5end |
Coexpression cluster: | C981_choriocarcinoma_chorionic_pancreatic_placenta_amniotic_vagina_MCF7 |
Association with transcript: | -493bp_to_ENST00000368012_5end |
EntrezGene: | PVRL4 |
HGNC: | 19688 |
UniProt: | Q96NY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 9.47e-22 | 3 |
germ line cell | 1.90e-20 | 7 |
germ cell | 1.90e-20 | 7 |
extraembryonic cell | 3.07e-13 | 19 |
amnion mesenchymal stem cell | 4.66e-13 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.19e-27 | 14 |
membranous layer | 2.19e-27 | 14 |
egg chorion | 9.47e-22 | 3 |
chorion | 1.37e-20 | 7 |
vagina | 2.63e-16 | 1 |
extraembryonic structure | 4.99e-16 | 24 |
amnion | 1.35e-09 | 7 |
somatic layer of lateral plate mesoderm | 1.65e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.04e-16 | 1 |
endocrine pancreas cancer | 1.04e-16 | 1 |
pancreatic endocrine carcinoma | 1.04e-16 | 1 |
germ cell and embryonal cancer | 6.62e-07 | 22 |
germ cell cancer | 6.62e-07 | 22 |