FFCP PHASE1:Hg19::chr2:189873877..189873903,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1281 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2201 | |||
|TSSclassifier=not | |||
|UniProt=P02461,Q6LBY7 | |||
|association_with_transcript=164bp_to_X01742_5end | |||
|coexpression_cluster_id=C292 | |||
|description=CAGE_peak_10_at_COL3A1_5end | |||
|id=chr2:189873877..189873903,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.57e-20!180;CL:0000187!2.37e-13!54;CL:0000057!5.50e-13!75;CL:0000680!9.70e-13!57;CL:0000056!9.70e-13!57;CL:0000355!9.70e-13!57;CL:0000183!1.51e-12!59;CL:0000393!1.03e-10!60;CL:0000211!1.03e-10!60;CL:0000192!5.54e-09!42;CL:0000514!5.54e-09!42;CL:0000048!1.25e-08!430;CL:0000136!5.00e-08!15;CL:0000723!5.62e-08!436;CL:0000034!1.23e-07!444;CL:0002494!7.96e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;7.23e-09;55!CL:0000723;2.93e-07;61!CL:0000349;3.04e-07;19!CL:0000135;3.51e-07;3!CL:0000388;3.51e-07;3!CL:0000048;4.24e-07;58!CL:0002579;8.39e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.08e-08,15;CL:0000048,9.50e-08,427;CL:0000723,2.18e-07,433;CL:0000349,3.04e-07,19;CL:0000135,3.64e-07,3;CL:0000388,3.64e-07,3;CL:0000034,6.34e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!3.03e-13!61;UBERON:0002036!3.03e-13!61;UBERON:0003082!3.03e-13!61;UBERON:0000914!3.55e-13!83;UBERON:0002329!3.55e-13!83;UBERON:0003077!3.55e-13!83;UBERON:0003059!3.55e-13!83;UBERON:0007282!3.55e-13!83;UBERON:0009618!3.55e-13!83;UBERON:0007285!3.55e-13!83;UBERON:0002385!4.76e-13!63;UBERON:0001015!4.76e-13!63;UBERON:0000383!4.76e-13!63;UBERON:0004290!2.31e-12!70;UBERON:0005256!4.58e-10!143;UBERON:0000486!1.14e-09!82;UBERON:0000478!4.03e-09!24;UBERON:0002100!7.74e-09!216;UBERON:0005631!4.54e-08!14;UBERON:0000158!4.54e-08!14;UBERON:0004872!2.23e-07!84;UBERON:0000948!3.17e-07!24;UBERON:0005498!3.17e-07!24;UBERON:0004140!3.17e-07!24;UBERON:0009881!3.17e-07!24;UBERON:0004141!3.17e-07!24;UBERON:0003084!3.17e-07!24;UBERON:0007005!3.17e-07!24;UBERON:0004139!3.17e-07!24;UBERON:0004291!3.17e-07!24;UBERON:0004923!3.45e-07!57;UBERON:0000926!7.30e-07!448;UBERON:0004120!7.30e-07!448;UBERON:0006603!7.30e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.49e-11;6!UBERON:0002358;1.49e-11;6!UBERON:0003684;1.49e-11;6!UBERON:0001178;1.49e-11;6!UBERON:0000478;5.28e-08;24!UBERON:0004457;2.20e-07;9!UBERON:0000042;2.20e-07;9!UBERON:0007846;3.51e-07;3!UBERON:0000043;3.51e-07;3!UBERON:0007845;3.51e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.66e-11,6;UBERON:0002358,2.66e-11,6;UBERON:0003684,2.66e-11,6;UBERON:0001178,2.66e-11,6;UBERON:0000478,5.39e-08,24;UBERON:0007846,3.64e-07,3;UBERON:0000043,3.64e-07,3;UBERON:0007845,3.64e-07,3 | |||
|phase1_expression=2.54349730978779,3.63970890614671,4.51054093107108,1.0007329835313,3.5756887554183,0.872338524100369,5.06599756336621,1.26343974685366,0.522371256399677,0,0,1.31064823278103,0.791300934685361,1.23766352960047,0,0.672325146451775,0.602694528023977,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,4.02420515822182,1.53435074212236,0,3.00802746381534,1.88300474649071,4.7717156823066,6.32625331393427,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98788780678127,0.506522046658319,0.529636723252875,3.15520282823695,1.41867352879343,1.12135520028461,2.1349799145941,0.49333509683432,1.55605517699883,0.538842688278752,0.490385709340376,0.605429710579726,1.72852777344,0.468642863667593,0,0,0.149448680551801,0.117434498643765,0,0.140450806702248,0.408308342509787,0,0.516628905878827,3.56400857184616,0.989067717114227,0,1.43723628363248,0.168336113954066,0.375355559615893,0,0,0.612975591598039,0.751190294532984,0.907457465280168,0.179389635688862,0.85422955527427,2.11931901159562,0,0.412210116953756,0,1.67505170698431,0.675105328965065,0.292311015483596,0.252433774244115,1.28869858099219,0.323292113637624,0,0,0,0,0,0,0,0,0.232387885739037,0.10366105501537,0,0,0,3.85944562915731,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,0,0,0,1.18157981336281,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,1.55126058909333,0,2.535908257668,1.32969058292435,1.04007436911366,0.257207374262142,0,0,4.00338382242813,11.3950537132203,0,0.325736184293735,4.26470338491055,1.58390374586686,0.904318131178758,0,1.49959486773086,0,0,0,0.718874566474748,1.14861935834114,0,0.434343920002738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,1.00034104211935,0,3.74347550755453,4.46072471992904,2.68094105557689,0.702848489956279,0.300946099727719,0,0,1.32845119707087,0.368738337083406,0.173767228936166,0.195801157462741,0,0,0,0,0.909382714338778,4.99306318531491,0.30239029332968,2.72918588600655,1.07423381301644,2.80660094433074,4.22859192543813,2.04682899626681,4.98647155545183,0,0.308419387605311,0.887808626565635,0.574890092096664,0,0.348631135379878,0,0,0,1.26295892981067,1.27463817604702,0.786746489756545,0,0,0,0,0,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,4.82051789532479,0.773365746336976,0.308097234229289,0.15350367472613,0.137836572484531,1.50388342815583,0.870100163485371,0.255679882248303,3.29418531892928,0,0,0,0,0.464845549297286,1.88887408098384,0,0.616067160352178,0.532306030317022,0,0.55597265731176,0.143124886741991,1.48863347743867,0.949138274156178,1.14378116354295,0.255897791311334,2.56763392820352,0.636406495851874,0,2.51821440616641,3.29444435683266,2.35624804691373,0.404364963146632,3.17020642346017,0,0.48763373908959,0.974853958525138,0,0.272999822815972,5.09059555033366,1.13008116620243,0,0,0,0.578775534266688,3.27947376023316,0.405820753925408,0.30982349809975,0.281695602532241,1.00387946542836,1.27723753317057,0,0,0.844430541190656,0.329294892959902,0.379473173765715,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,2.96964680832639,0.921482106297696,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0.933118762985422,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,1.07730361905316,0.455768223388005,0,0,0,0.638002319463839,1.55715908783166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,15.248975298677,0,0,0,0,0,2.41981432097328,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0,0.0882561266915003,2.71176888936639,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0.271808412147228,0.313808538937,0,0.288950589901519,0,0,0,0.429765441419957,0,0.837847203816763,0.458320848023367,0,0,0,0,0.403100834920358,5.04419836959365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,1.08599920350743,0,0.653174720218818,0,0,2.55582032678133,0,0,0,0,0,0,0,0.106787412567695,0.78602152549833,0.414239055347196,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.895528817321244,0.701139929541673,2.21922344601045,0.378806010550178,1.76097531226803,1.77962244319307,0,1.96600200892211,0.932623203496683,0,0.318593534327405,1.34940933649081,0.465788870628778,2.07353103920428,0.53168342911599,1.5652351854352,2.40412174395549,8.75851987988229,0,1.27294061441792,0.429642228169954,0.464033759878494,2.78667122089031,0.400027764663154,2.40376993627955,4.37774335395695,0,0.192619830407303,0.214441591374926,0,0.453411851024545,0,0,0,0,0.657852148736121,0,0,0.16894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| |||
|short_description=p10@COL3A1 | |||
}} |
Revision as of 07:30, 21 January 2014
Short description: | p10@COL3A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_COL3A1_5end |
Coexpression cluster: | C292_Mesenchymal_skin_umbilical_Adipocyte_mesenchymal_Chondrocyte_skeletal |
Association with transcript: | 164bp_to_X01742_5end |
EntrezGene: | COL3A1 |
HGNC: | 2201 |
UniProt: | P02461Q6LBY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.08e-08 | 15 |
multi fate stem cell | 9.50e-08 | 427 |
somatic stem cell | 2.18e-07 | 433 |
extraembryonic cell | 3.04e-07 | 19 |
fibrocyte | 3.64e-07 | 3 |
tendon cell | 3.64e-07 | 3 |
stem cell | 6.34e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.66e-11 | 6 |
peritoneum | 2.66e-11 | 6 |
abdominal cavity | 2.66e-11 | 6 |
visceral peritoneum | 2.66e-11 | 6 |
extraembryonic structure | 5.39e-08 | 24 |
dense regular connective tissue | 3.64e-07 | 3 |
tendon | 3.64e-07 | 3 |
regular connective tissue | 3.64e-07 | 3 |