FFCP PHASE1:Hg19::chr7:142251148..142251182,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12229 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000390360_5end | |||
|coexpression_cluster_id=C3928 | |||
|description=CAGE_peak_1_at_TRBV6-4_5end | |||
|id=chr7:142251148..142251182,- | |||
|ontology_enrichment_celltype=CL:0000791!1.04e-34!18;CL:0000789!1.04e-34!18;CL:0002420!1.04e-34!18;CL:0002419!1.04e-34!18;CL:0000790!1.04e-34!18;CL:0000084!1.81e-26!25;CL:0000827!1.81e-26!25;CL:0000625!2.17e-25!11;CL:0000838!6.54e-16!52;CL:0000542!1.72e-15!53;CL:0000051!1.72e-15!53;CL:0000738!7.41e-15!140;CL:0000080!2.93e-14!6;CL:0002087!6.35e-14!119;CL:0000624!2.70e-13!6;CL:0000988!1.80e-11!182;CL:0002031!3.40e-10!124;CL:0000037!3.77e-10!172;CL:0000566!3.77e-10!172;CL:0002032!9.64e-09!165;CL:0000837!9.64e-09!165;CL:0000623!9.38e-08!3;CL:0000825!9.38e-08!3;CL:0000898!9.60e-08!3;CL:0000842!2.09e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.91e-48;18!CL:0000789;2.91e-48;18!CL:0002419;2.91e-48;18!CL:0000625;5.50e-39;11!CL:0000084;7.68e-38;25!CL:0000624;1.82e-14;6!CL:0000898;2.86e-11;3!CL:0000542;4.60e-11;53!CL:0000815;4.50e-08;2!CL:0000792;4.50e-08;2!CL:0002677;4.50e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.88e-48,18;CL:0000789,2.88e-48,18;CL:0002420,2.88e-48,18;CL:0002419,2.88e-48,18;CL:0000790,2.88e-48,18;CL:0000625,4.62e-39,11;CL:0000084,7.36e-38,25;CL:0000827,7.36e-38,25;CL:0000838,1.75e-20,52;CL:0000542,5.26e-20,53;CL:0000051,5.26e-20,53;CL:0000624,2.08e-14,6;CL:0000898,2.81e-11,3;CL:0000738,6.16e-10,136;CL:0002087,1.67e-09,115;CL:0000988,7.89e-09,177;CL:0000815,3.98e-08,2;CL:0000792,3.98e-08,2;CL:0002677,3.98e-08,2;CL:0002031,5.01e-07,120;CL:0000037,5.60e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;2.91e-48;18!CL:0000051;4.60e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.11e-27!15;UBERON:0000179!1.11e-27!15;UBERON:0000463!1.11e-27!15;UBERON:0002390!9.43e-11!102;UBERON:0003061!9.43e-11!102;UBERON:0002193!5.81e-10!112;UBERON:0004177!6.49e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.35e-37;15!UBERON:0000179;2.35e-37;15!UBERON:0000463;2.35e-37;15!UBERON:0002390;5.41e-20;32!UBERON:0002193;6.60e-10;42!UBERON:0002370;1.15e-08;2!UBERON:0005058;1.15e-08;2!UBERON:0009113;1.15e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.47e-37,15;UBERON:0000179,2.47e-37,15;UBERON:0000463,2.47e-37,15;UBERON:0002370,6.11e-09,4;UBERON:0005058,6.11e-09,4;UBERON:0009113,6.11e-09,4;UBERON:0003295,6.11e-09,4;UBERON:0005562,6.11e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,1.15148819429164,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0.32389366601898,0.257575567634187,0,0.377875943688809,0,0,0.822335776043652,0,0,0.256160706529101,0,0,0,0,0,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0,1.13477044938228,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,1.12101712596307,0,0.590129310341499,2.35806457649499,2.05601498999509,3.67810289859492,4.56291173287027,4.73447805734733,1.94826728407911,4.67923918917729,2.94605907474837,2.87994062958707,4.06205795647523,1.79327847615945,0.910415432919148,3.28875809207352,2.48715016007264,3.76744011455568,4.00373720537563,1.60524496853828,5.22677619024884,1.92625882585863,3.06576394881537,5.84166657320471,3.28925599625354,4.45991580053735,4.55758417699493,7.60361635558699,6.92645547757755,6.91127700233859,11.2437653897111,9.23431282971666,16.4225599384209,14.5156855121807,2.67440195783507,1.73789284659359,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.30498432646167,5.60631694634745,0.77005821767849,0,1.30139853857622,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78950473144085,0.647142602455851,1.38745825144478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.01489521846434,0,1.13929437434833,1.66762242820452,3.29089818468955,3.24236655596359,5.40031437238115,4.75875105776562,0,0,0,0,0,1.35169502361987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,10.3782395038218,16.8046956967244,20.0490143050474,0,0,0,0,0,0,0,0,0,0.189559738885464,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,1.09651553371436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,0.281951753939561,0.45120521581504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476128862927481,10.205047754089,5.52464957233135,0,0,0,0,0,0.740872583160463,0,0,0,0,0,0,0,0.122241444182866,0,0,1.00636896795513,0 | |||
|short_description=p1@TRBV6-4 | |||
}} |
Revision as of 19:46, 22 January 2014
Short description: | p1@TRBV6-4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_1_at_TRBV6-4_5end |
Coexpression cluster: | C3928_cord_CD8_Natural_small_CD19_CD4_Whole |
Association with transcript: | 0bp_to_ENST00000390360_5end |
EntrezGene: | NA |
HGNC: | 12229 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.88e-48 | 18 |
alpha-beta T cell | 2.88e-48 | 18 |
immature T cell | 2.88e-48 | 18 |
mature T cell | 2.88e-48 | 18 |
immature alpha-beta T cell | 2.88e-48 | 18 |
CD8-positive, alpha-beta T cell | 4.62e-39 | 11 |
T cell | 7.36e-38 | 25 |
pro-T cell | 7.36e-38 | 25 |
lymphoid lineage restricted progenitor cell | 1.75e-20 | 52 |
lymphocyte | 5.26e-20 | 53 |
common lymphoid progenitor | 5.26e-20 | 53 |
CD4-positive, alpha-beta T cell | 2.08e-14 | 6 |
naive T cell | 2.81e-11 | 3 |
leukocyte | 6.16e-10 | 136 |
nongranular leukocyte | 1.67e-09 | 115 |
hematopoietic cell | 7.89e-09 | 177 |
regulatory T cell | 3.98e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.98e-08 | 2 |
naive regulatory T cell | 3.98e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 5.01e-07 | 120 |
hematopoietic stem cell | 5.60e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 2.47e-37 | 15 |
haemolymphatic fluid | 2.47e-37 | 15 |
organism substance | 2.47e-37 | 15 |
thymus | 6.11e-09 | 4 |
hemolymphoid system gland | 6.11e-09 | 4 |
thymic region | 6.11e-09 | 4 |
pharyngeal gland | 6.11e-09 | 4 |
thymus primordium | 6.11e-09 | 4 |