FFCP PHASE1:Hg19::chr7:80373528..80373541,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=10512 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=10725 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-8bp_to_D32000_5end | |||
|coexpression_cluster_id=C1283 | |||
|description=CAGE_peak_9_at_SEMA3C_5end | |||
|id=chr7:80373528..80373541,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000135;4.04e-21;3!CL:0000388;4.04e-21;3!CL:0000153;3.63e-12;9!CL:0000447;3.63e-12;9!CL:0000499;5.50e-11;28!CL:0000214;3.51e-10;3!CL:0000511;3.54e-08;1!CL:0002625;3.54e-08;1!CL:0000216;3.54e-08;1!CL:0002616;1.04e-07;1!CL:0000327;2.46e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,4.65e-21,3;CL:0000388,4.65e-21,3;CL:0000153,4.33e-12,9;CL:0000447,4.33e-12,9;CL:0000499,6.24e-11,28;CL:0000214,3.36e-10,3;CL:0000511,3.55e-08,1;CL:0002625,3.55e-08,1;CL:0000216,3.55e-08,1;CL:0002616,5.70e-08,1;CL:0000327,2.72e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.44e-10!14;DOID:120!9.09e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.36e-11;14!DOID:6193;4.35e-08;1!DOID:3369;1.04e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.70e-11,14;DOID:6193,4.07e-08,1;DOID:3369,8.51e-08,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0007846;4.04e-21;3!UBERON:0000043;4.04e-21;3!UBERON:0007845;4.04e-21;3!UBERON:0002118;2.81e-12;5!UBERON:0006915;3.51e-10;3!UBERON:0007616;3.51e-10;3!UBERON:0002217;3.51e-10;3!UBERON:0002018;3.51e-10;3!UBERON:0001136;3.54e-08;1!UBERON:0001343;3.54e-08;1!UBERON:0004910;3.54e-08;1!UBERON:0004813;3.54e-08;1!UBERON:0004457;2.95e-07;9!UBERON:0000042;2.95e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,4.65e-21,3;UBERON:0000043,4.65e-21,3;UBERON:0007845,4.65e-21,3;UBERON:0002118,3.04e-12,5;UBERON:0006915,3.36e-10,3;UBERON:0007616,3.36e-10,3;UBERON:0002217,3.36e-10,3;UBERON:0002018,3.36e-10,3;UBERON:0001136,3.55e-08,1;UBERON:0001343,3.55e-08,1;UBERON:0004910,3.55e-08,1;UBERON:0005154,3.55e-08,1;UBERON:0005295,3.55e-08,1;UBERON:0004813,3.55e-08,1;UBERON:0005297,3.55e-08,1;UBERON:0005294,3.55e-08,1;UBERON:0010141,3.55e-08,1;UBERON:0005891,3.55e-08,1 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0.422863212287913,0,0.893922188854576,1.74467704820074,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0.50133791063589,2.60723734129483,0,0,0.189069634328136,0,0.702678285545008,0,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.12663051166458,0,2.86836620748814,0.354668382198357,0,0,0.24666754841716,0,0.134710672069688,0,0,0.576175924479999,0.234321431833797,0.624320153660641,0,0.448346041655403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0.113432183160021,0.538168907066586,0.213557388818567,0.211931901159562,0.900273288253207,0.103052529238439,1.03056216018252,0,0.168776332241266,0,0.252433774244115,0.0920498986422993,0.161646056818812,0.710019185033229,0.10075209822764,0,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0.236613600079688,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0.514703430895577,0,0,0.402115889646523,0.185176890317059,0,0,1.44331342025273,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0,0,0.671928512795438,0.425325291727159,0.447792613514241,0,0,0,0,0,0,0,0.190493682876507,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0.899756920638513,0,0,0,0.239624855491583,0,0,0.723906533337896,0.410952645100767,0.358121926479791,0,0,0,0,0,0,1.54657762555539,0.167516265334349,1.27587750330633,0,0,0,0.12269149171914,0.500170521059677,0,0.415941723061614,0.356857977594324,0.157702415033935,0.234282829985426,0,0,0,0,0.184369168541703,0.260650843404249,0,0,0,0,0,0,0,0,0.496215615637554,0,1.12264037773229,0.256278298511402,0,1.93024705372329,0,0.308419387605311,0.532685175939381,0,0,0.348631135379878,0.120859449591622,1.20303882181971,0.276242966807689,0.114814448164607,0.728364672026868,0,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.21367859688319,0,0,0,0,0,0,0.170453254832202,0,0.826424576804891,0.768760269460425,0,0.2023155617111,0.464845549297286,0.94443704049192,0,0.308033580176089,0,0,0,0,0.744316738719335,0.316379424718726,0,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0,0,1.21856744815642,0,0.272999822815972,0.424216295861138,0,0,0,1.31535265576129,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,4.85547561184627,10.8667314676768,0,0,0.0962221127255121,0,0,0,0,0,0,0.918893600827838,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.242721043499027,0,0,0.47748896947538,0,0.614321404198464,0,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0,0.472775363535873,0,0,0.173624994933292,0,0,0,0,0,0.219385397153973,0,0,0,0.227884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0.693373365065693,0.347119476670262,0,0,0.34945333648406,2.75177651954586,0,0,0.0821154570532092,0.0969890164884194,0.0882561266915003,0.451961481561065,0,0,0,0.195551382734803,0,0,1.39866726707491,0.288180834308212,0,0,0,0,0.235694034616795,0.67952103036807,0.209205692624666,0,0.577901179803038,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.63293680054705,0,0,0.851940108927109,0.339936274560377,0,0,0.129282956361551,0.26446520348538,0,0.704815022316672,0,0.157204305099666,0,0,0,0,0,0.544017803369474,0,0.306345576763462,0,0,0,0,0.1251909307065,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0.233713309847224,0,0.568209015825267,0.251567901752575,0,0.228840068396924,0.756154618816195,0.621748802331122,0.295710299979268,0.955780602982214,0.899606224327209,0.931577741257556,0.829412415681711,0.797525143673985,1.04349012362347,0.901545653983311,1.52322084867518,2.44122439922797,1.09109195521536,0.859284456339908,0,1.59238355479446,0,0,0.336749488765919,0,0,0,0,0.226705925512272,0.694567422971502,0,0.537266523244462,0.308801447160972,0.657852148736121,0.353378291891762,0.964570191354574,0.337884881306145,0,0,0,0.276516872303462,0.194860308839388,0,0,0,0.491545817507439,0,0,0,0,0,0.184105950251841,0.279759015438889,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,1.00828678488687,0,0,0,0,0,0,0,0.762764190934334,0,0.198916222116275,0.0752103283492573,0.20170506870352,0,0,0.49131575253029,0.295712172434091,0,0,0,0,0,0,0,0,0.894336993477167,0,0,0,0,0,0,0.514464028312255,0.0679697329768317,0,0.236387681767936,0.222462803784138,0,0,0.560544326627578,0,0.431855182437243,0.47775168788705,0.1429530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| |||
|short_description=p9@SEMA3C | |||
}} |
Revision as of 17:36, 22 January 2014
Short description: | p9@SEMA3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_9_at_SEMA3C_5end |
Coexpression cluster: | C1283_Synoviocyte_tenocyte_Fibroblast_Adipocyte_Ewing_Chondrocyte_Neurons |
Association with transcript: | -8bp_to_D32000_5end |
EntrezGene: | SEMA3C |
HGNC: | 10725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 4.65e-21 | 3 |
tendon cell | 4.65e-21 | 3 |
GAG secreting cell | 4.33e-12 | 9 |
carbohydrate secreting cell | 4.33e-12 | 9 |
stromal cell | 6.24e-11 | 28 |
synovial cell | 3.36e-10 | 3 |
androgen binding protein secreting cell | 3.55e-08 | 1 |
seminiferous tubule epithelial cell | 3.55e-08 | 1 |
Sertoli cell | 3.55e-08 | 1 |
perirenal adipocyte cell | 5.70e-08 | 1 |
extracellular matrix secreting cell | 2.72e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 4.65e-21 | 3 |
tendon | 4.65e-21 | 3 |
regular connective tissue | 4.65e-21 | 3 |
right ovary | 3.04e-12 | 5 |
stratified squamous epithelium | 3.36e-10 | 3 |
layer of synovial tissue | 3.36e-10 | 3 |
synovial joint | 3.36e-10 | 3 |
synovial membrane of synovial joint | 3.36e-10 | 3 |
mesothelium | 3.55e-08 | 1 |
seminiferous tubule of testis | 3.55e-08 | 1 |
epithelium of male gonad | 3.55e-08 | 1 |
epithelial cord | 3.55e-08 | 1 |
sex cord | 3.55e-08 | 1 |
seminiferous tubule epithelium | 3.55e-08 | 1 |
testis sex cord | 3.55e-08 | 1 |
genital ridge | 3.55e-08 | 1 |
primitive sex cord of indifferent gonad | 3.55e-08 | 1 |
coelomic epithelium | 3.55e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.70e-11 | 14 |
epithelioid sarcoma | 4.07e-08 | 1 |
peripheral primitive neuroectodermal tumor | 8.51e-08 | 1 |