UBERON:0001781: Difference between revisions
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|located_in= | |located_in= | ||
|name=layer of retina | |name=layer of retina | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000966 | |part_of=UBERON:0000966 | ||
Latest revision as of 17:20, 12 September 2014
| Name: | layer of retina | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "any of the layers that make up the retina[MP]." [MP:0003727] | ||
| Xrefs: |
| ||
| Synonyms: |
"retina layer" EXACT [] "retina neuronal layer" EXACT [MP:0006069] "retinal layer" EXACT [] "retinal neuronal layer" EXACT [MP:0006069] | ||
| Comments: | Note that MA does not treat internal/external limiting memranes as layers - these are classified as laminae. Here we follow other ontologies in grouping with other layers. MA also treats retinal pigment epithelium and neural retina epithelium as distinct from the layers. We follow ontologies such as FMA and ZFA in first dividing into pigmented and neural layers - these are also classified as layers, giving us over the usual 10 layers | ||
| Alt_id: | UBERON:FMA_58617-MA_0001319-XAO_0000266 | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0004923(organ component layer) |
|---|---|
| part_of: | UBERON:0000966(retina) |
Children
| is a: | UBERON:0001782 (pigmented layer of retina),UBERON:0003902 (retinal neural layer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11528-119I7 (Retinal Pigment Epithelial Cells, donor1)
- 11608-120I6 (Retinal Pigment Epithelial Cells, donor2)
- 11689-122I6 (Retinal Pigment Epithelial Cells, donor3)
- 13663-147C9 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13664-147D1 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13665-147D2 (ARPE-19 EMT induced with TGF-beta and TNF-alpha, 06hr00min, biol_rep2)
- 13666-147D3 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13667-147D4 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
- 13668-147D5 (ARPE-19 EMT induced with TGF-beta and TNF-alpha)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001781 (layer of retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.94e-147 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_027f8c9863ead0321c9a7c0ffc4f2b0f | p@chr1:147150847..147150854, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_027f8c9863ead0321c9a7c0ffc4f2b0f | p@chr1:147150847..147150854, - |
| 8.91e-111 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_d0ca610aeadd532f867636b7fd2ab5e7 | p2@SERPINE3 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_d0ca610aeadd532f867636b7fd2ab5e7 | p2@SERPINE3 |
| 1.3e-110 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_011a71b32989c80ffeb0bc2ef8bf81dc | p@chr13:99135322..99135327, - |
| 1.3e-110 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_011a71b32989c80ffeb0bc2ef8bf81dc | p@chr13:99135322..99135327, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_fdc9424e075f1f358d9aa63085a04c66 | p@chr13:51913893..51913901, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_fdc9424e075f1f358d9aa63085a04c66 | p@chr13:51913893..51913901, + |
| 2.27e-98 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_ced415564f86d739d4a8c0b12226423c | p@chr3:69928404..69928418, + |
| 2.27e-98 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_ced415564f86d739d4a8c0b12226423c | p@chr3:69928404..69928418, + |
| 5.72e-89 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_db51547460bdf53229d5f60eaf7a3ad2 | p@chr11:109990513..109990520, - |
| 5.72e-89 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_db51547460bdf53229d5f60eaf7a3ad2 | p@chr11:109990513..109990520, - |
| 1.41e-88 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_e628563dc698ccee0992662f7ed6a05f | p@chr5:70308745..70308754, - |
| 1.41e-88 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_e628563dc698ccee0992662f7ed6a05f | p@chr5:70308745..70308754, - |
| 2.01e-74 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_90bacd197165f1d10103f31c41b6cdbf | p2@C11orf9 |
| 2.01e-74 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_90bacd197165f1d10103f31c41b6cdbf | p2@C11orf9 |
| 4.26e-74 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_785d897d7daec35fc5df39fb4c011180 | p@chr2:235591306..235591328, + |
| 4.26e-74 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_785d897d7daec35fc5df39fb4c011180 | p@chr2:235591306..235591328, + |
| 5.48e-74 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_d0649ec4cb3de2b2f429304fa2e5972a | p@chr17:932340..932343, - |
| 5.48e-74 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_d0649ec4cb3de2b2f429304fa2e5972a | p@chr17:932340..932343, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_4b8928724c3c30af7dfa955b1c3005f2 | p9@C11orf9 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_4b8928724c3c30af7dfa955b1c3005f2 | p9@C11orf9 |
| 3.35e-66 | FFCP PHASE2:Hg19::chr8:75898210..75898219,+#_2c8725d397682891a37e3f904bd03ee7 | p11@CRISPLD1 |
| 3.35e-66 | FFCP PHASE1:Hg19::chr8:75898210..75898219,+#_2c8725d397682891a37e3f904bd03ee7 | p11@CRISPLD1 |
| 4.67e-66 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_111265eca8d2c000cc352af405041730 | p5@ENST00000437916 |
| 4.67e-66 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_111265eca8d2c000cc352af405041730 | p5@ENST00000437916 |
| 2.61e-64 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_2f4dd73c5f4df8a0240a9426db290750 | p1@SERPINE3 |
| 2.61e-64 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_2f4dd73c5f4df8a0240a9426db290750 | p1@SERPINE3 |
| 1.18e-63 | FFCP PHASE1:Hg19::chr2:219610798..219610810,+#_29302811be20bca35dfb1b5486defc82 | p17@TTLL4 |
| 1.18e-63 | FFCP PHASE2:Hg19::chr2:219610798..219610810,+#_29302811be20bca35dfb1b5486defc82 | p17@TTLL4 |
| 1.22e-57 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_48b188a4b3c511090422a850886a1e53 | p@chr9:140088882..140088898, - |
| 1.22e-57 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_48b188a4b3c511090422a850886a1e53 | p@chr9:140088882..140088898, - |
| 2.6e-56 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_93c529e237ad981d5bc56c6fc49575b6 | p@chr3:69928426..69928436, + |
| 2.6e-56 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_93c529e237ad981d5bc56c6fc49575b6 | p@chr3:69928426..69928436, + |
| 4.58e-56 | FFCP PHASE2:Hg19::chr22:37633537..37633546,-#_37eee3f3e8fa0ab8e501de8d13ca7a23 | p@chr22:37633537..37633546, - |
| 4.58e-56 | FFCP PHASE1:Hg19::chr6:168250971..168250985,+#_37eee3f3e8fa0ab8e501de8d13ca7a23 | p@chr6:168250971..168250985, + |
| 4.58e-56 | FFCP PHASE2:Hg19::chr6:168250971..168250985,+#_37eee3f3e8fa0ab8e501de8d13ca7a23 | p@chr6:168250971..168250985, + |
| 4.58e-56 | FFCP PHASE1:Hg19::chr22:37633537..37633546,-#_37eee3f3e8fa0ab8e501de8d13ca7a23 | p@chr22:37633537..37633546, - |
| 6.68e-56 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_b9118deb2eac8fc14ade4f43ea36dbcf | p@chr1:43533230..43533270, + |
| 6.68e-56 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_b9118deb2eac8fc14ade4f43ea36dbcf | p@chr1:43533230..43533270, + |
| 2.37e-53 | FFCP PHASE2:Hg19::chr8:144905532..144905541,-#_5ea096d743f1ad841534dc2794b3feb9 | p6@PUF60 |
| 2.37e-53 | FFCP PHASE1:Hg19::chr8:144905532..144905541,-#_5ea096d743f1ad841534dc2794b3feb9 | p6@PUF60 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:51913997..51914020,+#_2491d95be1bf4e37411c782954cfb295 | p@chr13:51913997..51914020, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:51913997..51914020,+#_2491d95be1bf4e37411c782954cfb295 | p@chr13:51913997..51914020, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_2491d95be1bf4e37411c782954cfb295 | p@chr12:57628762..57628773, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_2491d95be1bf4e37411c782954cfb295 | p@chr12:57628762..57628773, - |
| 3.69e-50 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_2b26fc7d3d2a9331a6e3987ab5b0aeac | p5@CLIC6 |
| 3.69e-50 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_2b26fc7d3d2a9331a6e3987ab5b0aeac | p5@CLIC6 |
| 8.47e-50 | FFCP PHASE1:Hg19::chr6:168251000..168251007,+#_382f4db003c933664113fe72439b0ad8 | p@chr6:168251000..168251007, + |
| 8.47e-50 | FFCP PHASE2:Hg19::chr6:168251000..168251007,+#_382f4db003c933664113fe72439b0ad8 | p@chr6:168251000..168251007, + |
| 1.97e-45 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_60157593ef692beee7b00be9fa23315f | p@chr13:99135278..99135298, - |
| 1.97e-45 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_60157593ef692beee7b00be9fa23315f | p@chr13:99135278..99135298, - |
| 1.67e-41 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_ff9a80b1ad8bddae36b648da32a93edd | p@chr3:69928371..69928385, + |
| 1.67e-41 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_ff9a80b1ad8bddae36b648da32a93edd | p@chr3:69928371..69928385, + |
| 2.2e-41 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_a8a22e4469f9b6426d16fdf27ae7c941 | p@chr14:87636652..87636657, - |
| 2.2e-41 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_a8a22e4469f9b6426d16fdf27ae7c941 | p@chr14:87636652..87636657, - |
| 7.56e-41 | FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_e9623f5136dba86698c3b038f7d6f67c | p13@NAV3 |
| 7.56e-41 | FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_e9623f5136dba86698c3b038f7d6f67c | p13@NAV3 |
| 1.81e-40 | FFCP PHASE2:Hg19::chr2:235591286..235591298,+#_6f394c7b7fc120696285ed08d1c75991 | p@chr2:235591286..235591298, + |
| 1.81e-40 | FFCP PHASE1:Hg19::chr2:235591286..235591298,+#_6f394c7b7fc120696285ed08d1c75991 | p@chr2:235591286..235591298, + |
| 4.94e-40 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_7dfbf0f564214c5667fe82c50fa31e7e | p@chr16:84228961..84228982, + |
| 4.94e-40 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_7dfbf0f564214c5667fe82c50fa31e7e | p5@MFRP, p6@C1QTNF5 |
| 4.94e-40 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_7dfbf0f564214c5667fe82c50fa31e7e | p@chr16:84228961..84228982, + |
| 4.94e-40 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_7dfbf0f564214c5667fe82c50fa31e7e | p5@MFRP, p6@C1QTNF5 |
| 1.75e-38 | FFCP PHASE1:Hg19::chr3:45837959..45837973,-#_2afb3bdf84b8ffb9a6daf0f2a33bf877 | p3@SLC6A20 |
| 1.75e-38 | FFCP PHASE2:Hg19::chr3:45837959..45837973,-#_2afb3bdf84b8ffb9a6daf0f2a33bf877 | p3@SLC6A20 |
| 2.78e-38 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_c8377577e61f068f541ae6f0da731564 | p3@CLIC6 |
| 2.78e-38 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_c8377577e61f068f541ae6f0da731564 | p3@CLIC6 |
| 4.61e-38 | FFCP PHASE1:Hg19::chr11:75201755..75201762,-#_c13b8f3b5abd21993b117ce2e11ece28 | p7@GDPD5 |
| 4.61e-38 | FFCP PHASE2:Hg19::chr11:75201755..75201762,-#_c13b8f3b5abd21993b117ce2e11ece28 | p7@GDPD5 |
| 1.26e-37 | FFCP PHASE2:Hg19::chr11:119217421..119217435,-#_058013fc2b5d294f1502fa7705ef602d | p4@MFRP, p5@C1QTNF5 |
| 1.26e-37 | FFCP PHASE1:Hg19::chr11:119217421..119217435,-#_058013fc2b5d294f1502fa7705ef602d | p4@MFRP, p5@C1QTNF5 |
| 5.06e-34 | FFCP PHASE2:Hg19::chr8:22411813..22411825,+#_120ab7ba3631099f290aacd96cc94262 | p55@SORBS3 |
| 5.06e-34 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_120ab7ba3631099f290aacd96cc94262 | p@chr17:932596..932605, - |
| 5.06e-34 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_120ab7ba3631099f290aacd96cc94262 | p@chr17:932596..932605, - |
| 5.06e-34 | FFCP PHASE1:Hg19::chr8:22411813..22411825,+#_120ab7ba3631099f290aacd96cc94262 | p55@SORBS3 |
| 8.36e-34 | FFCP PHASE2:Hg19::chr20:52790691..52790695,-#_c51c894a69b6baf45f94f943c0d78115 | p5@CYP24A1 |
| 8.36e-34 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_c51c894a69b6baf45f94f943c0d78115 | p1@SLC16A8 |
| 8.36e-34 | FFCP PHASE1:Hg19::chr20:52790691..52790695,-#_c51c894a69b6baf45f94f943c0d78115 | p5@CYP24A1 |
| 8.36e-34 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_c51c894a69b6baf45f94f943c0d78115 | p1@SLC16A8 |
| 1.38e-33 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_6c8938b22984a1f6574a80e433215868 | p@chr3:98672197..98672201, + |
| 1.38e-33 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_6c8938b22984a1f6574a80e433215868 | p@chr3:98672197..98672201, + |
| 1.63e-33 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_509636d1bab482fe419be5d02d2fed61 | p@chr3:183733654..183733680, - |
| 1.63e-33 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_509636d1bab482fe419be5d02d2fed61 | p@chr3:183733654..183733680, - |
| 1.63e-33 | FFCP PHASE1:Hg19::chr9:127025189..127025200,+#_509636d1bab482fe419be5d02d2fed61 | p1@ENST00000437461 |
| 1.63e-33 | FFCP PHASE2:Hg19::chr9:127025189..127025200,+#_509636d1bab482fe419be5d02d2fed61 | p1@ENST00000437461 |
| 6.19e-33 | FFCP PHASE2:Hg19::chr14:28081776..28081788,+#_5dd297473a8342411968c67a7a0e95a0 | p1@LOC100505967 |
| 6.19e-33 | FFCP PHASE1:Hg19::chr14:28081776..28081788,+#_5dd297473a8342411968c67a7a0e95a0 | p1@LOC100505967 |
| 1.18e-32 | FFCP PHASE1:Hg19::chr2:45169172..45169177,+#_dfa8f437d0642bb2cd05b25fe2999d4e | p11@SIX3 |
| 1.18e-32 | FFCP PHASE2:Hg19::chr2:45169172..45169177,+#_dfa8f437d0642bb2cd05b25fe2999d4e | p11@SIX3 |
| 1.64e-32 | FFCP PHASE1:Hg19::chr5:33984786..33984820,-#_7a280d00016f0c933d4c53b006172660 | p2@SLC45A2 |
| 1.64e-32 | FFCP PHASE2:Hg19::chr5:33984786..33984820,-#_7a280d00016f0c933d4c53b006172660 | p2@SLC45A2 |
| 5.16e-32 | FFCP PHASE2:Hg19::chr15:31393917..31393936,-#_5dbc4ce8dde71e126c68aa824ea09cc8 | p1@TRPM1 |
| 5.16e-32 | FFCP PHASE1:Hg19::chr15:31393917..31393936,-#_5dbc4ce8dde71e126c68aa824ea09cc8 | p1@TRPM1 |
| 4.66e-31 | FFCP PHASE1:Hg19::chr16:68301840..68301845,+#_b5257190b84af9c9dc8474fd52b0e329 | p@chr16:68301840..68301845, + |
| 4.66e-31 | FFCP PHASE2:Hg19::chr16:68301840..68301845,+#_b5257190b84af9c9dc8474fd52b0e329 | p@chr16:68301840..68301845, + |
| 9.47e-31 | FFCP PHASE1:Hg19::chr19:49140255..49140268,-#_44db50fcd402555df52d7a18136809e9 | p9@DBP |
| 9.47e-31 | FFCP PHASE2:Hg19::chr19:49140255..49140268,-#_44db50fcd402555df52d7a18136809e9 | p9@DBP |
| 1.16e-30 | FFCP PHASE2:Hg19::chr12:52579447..52579461,-#_c3cdef0059c0c96f3cc74e3b6c9459ac | p6@KRT80 |
| 1.16e-30 | FFCP PHASE1:Hg19::chr12:52579447..52579461,-#_c3cdef0059c0c96f3cc74e3b6c9459ac | p6@KRT80 |
