UBERON:0003528: Difference between revisions
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|located_in= | |located_in= | ||
|name=brain grey matter | |name=brain grey matter | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000955 | |part_of=UBERON:0000955 | ||
Latest revision as of 17:40, 12 September 2014
| Name: | brain grey matter | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A gray matter of neuraxis that is part of a brain [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"brain gray matter" EXACT [OBOL:automatic] "brain gray matter of neuraxis" EXACT [OBOL:automatic] "brain grey substance" EXACT [OBOL:automatic] "gray matter of brain" EXACT [OBOL:automatic] "gray matter of neuraxis of brain" EXACT [OBOL:automatic] "grey matter of brain" EXACT [OBOL:automatic] "grey substance of brain" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002020(gray matter) |
|---|---|
| part_of: | UBERON:0000955(brain) |
Children
| is a: | UBERON:0002420 (basal ganglion),UBERON:0006514 (pallidum),UBERON:0010122 (future caudate nucleus),UBERON:0011300 (gray matter of telencephalon) |
|---|---|
| part of: | UBERON:0002308 (nucleus of brain) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
... further results Mouse (Mus musculus)
- 10031-101E4 (temporal lobe, adult, pool1)
- 10032-101E5 (postcentral gyrus, adult, pool1)
- 10034-101E7 (parietal lobe, adult, pool1)
- 10036-101E9 (occipital pole, adult, pool1)
- 10037-101F1 (nucleus accumbens, adult, pool1)
- 10039-101F3 (insula, adult, pool1)
- 10040-101F4 (frontal lobe, adult, pool1)
- 10071-101I8 (duodenum, fetal, donor1)
- 10072-101I9 (parietal lobe, fetal, donor1)
- 10073-102A1 (occipital lobe, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003528 (brain grey matter), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.77e-120 | FFCP PHASE2:Hg19::chr11:49582389..49582417,+#_9271de7c742b723d644ab2015727346b | p1@ENST00000527477, p1@ENST00000530858 |
| 2.77e-120 | FFCP PHASE1:Hg19::chr11:49582389..49582417,+#_9271de7c742b723d644ab2015727346b | p1@ENST00000527477, p1@ENST00000530858 |
| 3.69e-119 | FFCP PHASE2:Hg19::chr14:24047743..24047754,-#_0ec275c9aeb300eae2199babfd3deccd | p12@JPH4 |
| 3.69e-119 | FFCP PHASE1:Hg19::chr14:24047743..24047754,-#_0ec275c9aeb300eae2199babfd3deccd | p12@JPH4 |
| 3.97e-118 | FFCP PHASE2:Hg19::chr12:11652664..11652681,+#_d53101bc2f8234549ccad72a715cdfd9 | p@chr12:11652664..11652681, + |
| 3.97e-118 | FFCP PHASE1:Hg19::chr12:11652664..11652681,+#_d53101bc2f8234549ccad72a715cdfd9 | p@chr12:11652664..11652681, + |
| 2.4e-117 | FFCP PHASE1:Hg19::chr4:6474472..6474528,-#_67ead9750b27e4759c82190a9a935ac6 | p6@PPP2R2C |
| 2.4e-117 | FFCP PHASE2:Hg19::chr4:6474472..6474528,-#_67ead9750b27e4759c82190a9a935ac6 | p6@PPP2R2C |
| 2.24e-116 | FFCP PHASE1:Hg19::chr2:210444748..210444770,+#_f8e5519d53876999fab56a19e55eb0c4 | p20@MAP2 |
| 2.24e-116 | FFCP PHASE2:Hg19::chr2:210444748..210444770,+#_f8e5519d53876999fab56a19e55eb0c4 | p20@MAP2 |
| 6.97e-116 | FFCP PHASE1:Hg19::chr7:150748288..150748337,+#_acd727aedf8ebf32f52788fd124577bb | p1@ACCN3 |
| 6.97e-116 | FFCP PHASE2:Hg19::chr7:150748288..150748337,+#_acd727aedf8ebf32f52788fd124577bb | p1@ACCN3 |
| 4.01e-115 | FFCP PHASE2:Hg19::chr19:54462732..54462743,+#_428261e42ef78e1ec8f7713fb23ebef3 | p@chr19:54462732..54462743, + |
| 4.01e-115 | FFCP PHASE1:Hg19::chr19:54462732..54462743,+#_428261e42ef78e1ec8f7713fb23ebef3 | p@chr19:54462732..54462743, + |
| 1.14e-114 | FFCP PHASE1:Hg19::chr12:14133429..14133438,-#_3470971641e9b2f082694db33ce256cf | p3@GRIN2B |
| 1.14e-114 | FFCP PHASE2:Hg19::chr12:14133429..14133438,-#_3470971641e9b2f082694db33ce256cf | p3@GRIN2B |
| 3.44e-114 | FFCP PHASE1:Hg19::chr19:55794942..55794982,+#_df0218af0efc9258b2aa534f17b4dbf9 | p@chr19:55794942..55794982, + |
| 3.44e-114 | FFCP PHASE2:Hg19::chr19:55794942..55794982,+#_df0218af0efc9258b2aa534f17b4dbf9 | p@chr19:55794942..55794982, + |
| 4.09e-114 | FFCP PHASE1:Hg19::chr2:115200192..115200244,+#_68ac70504cb4a7816b5d5118acf35e9d | p3@DPP10 |
| 4.09e-114 | FFCP PHASE2:Hg19::chr2:115200192..115200244,+#_68ac70504cb4a7816b5d5118acf35e9d | p3@DPP10 |
| 5.07e-114 | FFCP PHASE1:Hg19::chr19:54462276..54462325,+#_715985557c8b462e92800bc8768b86bc | p@chr19:54462276..54462325, + |
| 5.07e-114 | FFCP PHASE2:Hg19::chr19:54462276..54462325,+#_715985557c8b462e92800bc8768b86bc | p@chr19:54462276..54462325, + |
| 1.45e-113 | FFCP PHASE2:Hg19::chr16:24267508..24267525,+#_39be679d86f25ccc1f5cebc1414dfa02 | p4@CACNG3 |
| 1.45e-113 | FFCP PHASE1:Hg19::chr16:24267508..24267525,+#_39be679d86f25ccc1f5cebc1414dfa02 | p4@CACNG3 |
| 2.01e-113 | FFCP PHASE2:Hg19::chr20:1975321..1975338,-#_527772739c511ea8f9fbac0dfd4ab9f9 | p3@PDYN |
| 2.01e-113 | FFCP PHASE1:Hg19::chr20:1975321..1975338,-#_527772739c511ea8f9fbac0dfd4ab9f9 | p3@PDYN |
| 9.5e-113 | FFCP PHASE2:Hg19::chr5:160975135..160975218,-#_913c7b68487a1080163b5a908871910c | p3@GABRB2 |
| 9.5e-113 | FFCP PHASE1:Hg19::chr5:160975135..160975218,-#_913c7b68487a1080163b5a908871910c | p3@GABRB2 |
| 1.47e-112 | FFCP PHASE2:Hg19::chr11:133402367..133402378,-#_bb09554c5445937fadcb09f42b47ee33 | p8@OPCML |
| 1.47e-112 | FFCP PHASE1:Hg19::chr11:133402367..133402378,-#_bb09554c5445937fadcb09f42b47ee33 | p8@OPCML |
| 2.02e-112 | FFCP PHASE1:Hg19::chr12:14134636..14134651,-#_e3d6546d2e69f73f0d06edf7fc168064 | p@chr12:14134636..14134651, - |
| 2.02e-112 | FFCP PHASE2:Hg19::chr12:14134636..14134651,-#_e3d6546d2e69f73f0d06edf7fc168064 | p@chr12:14134636..14134651, - |
| 4.68e-112 | FFCP PHASE2:Hg19::chr4:6474536..6474563,-#_d0fcdb84f0af3556c24f2131b5457bd6 | p9@PPP2R2C |
| 4.68e-112 | FFCP PHASE1:Hg19::chr4:6474536..6474563,-#_d0fcdb84f0af3556c24f2131b5457bd6 | p9@PPP2R2C |
| 2.32e-111 | FFCP PHASE2:Hg19::chr18:55019840..55019850,+#_17d5876204aa8239156ec22aa50188fc | p5@ST8SIA3 |
| 2.32e-111 | FFCP PHASE1:Hg19::chr18:55019840..55019850,+#_17d5876204aa8239156ec22aa50188fc | p5@ST8SIA3 |
| 2.51e-111 | FFCP PHASE1:Hg19::chr19:54462535..54462548,+#_e3fc09181a2d6669f873632f03ded60b | p@chr19:54462535..54462548, + |
| 2.51e-111 | FFCP PHASE2:Hg19::chr19:54462535..54462548,+#_e3fc09181a2d6669f873632f03ded60b | p@chr19:54462535..54462548, + |
| 4.73e-111 | FFCP PHASE1:Hg19::chr11:133402410..133402434,-#_45de49b47a2fcad033b4d4f24bdec680 | p5@OPCML |
| 4.73e-111 | FFCP PHASE2:Hg19::chr11:133402410..133402434,-#_45de49b47a2fcad033b4d4f24bdec680 | p5@OPCML |
| 8.62e-111 | FFCP PHASE2:Hg19::chr5:80255907..80255942,+#_77b33c4a3e5c3bc92f7e6b747d7e09b5 | p@chr5:80255907..80255942, + |
| 8.62e-111 | FFCP PHASE1:Hg19::chr5:80255907..80255942,+#_77b33c4a3e5c3bc92f7e6b747d7e09b5 | p@chr5:80255907..80255942, + |
| 2.43e-110 | FFCP PHASE1:Hg19::chr6:62390886..62390903,-#_f2ecc6faf527baa3b57e7f141f163a4e | p1@ENST00000511849 |
| 2.43e-110 | FFCP PHASE2:Hg19::chr6:62390886..62390903,-#_f2ecc6faf527baa3b57e7f141f163a4e | p1@ENST00000511849 |
| 3.36e-110 | FFCP PHASE2:Hg19::chr6:108487289..108487302,+#_d946b299f9ea81ea0d2771bd0a454f0b | p1@NR2E1 |
| 3.36e-110 | FFCP PHASE1:Hg19::chr6:108487289..108487302,+#_d946b299f9ea81ea0d2771bd0a454f0b | p1@NR2E1 |
| 5.09e-110 | FFCP PHASE1:Hg19::chr9:112629512..112629528,+#_6333c1638c793a6078010724e7918405 | p7@PALM2 |
| 5.09e-110 | FFCP PHASE2:Hg19::chr9:112629512..112629528,+#_6333c1638c793a6078010724e7918405 | p7@PALM2 |
| 8.14e-110 | FFCP PHASE1:Hg19::chrX:152939089..152939119,-#_b03387ba66bfd24226ef8b8290365e30 | p2@PNCK |
| 8.14e-110 | FFCP PHASE2:Hg19::chrX:152939089..152939119,-#_b03387ba66bfd24226ef8b8290365e30 | p2@PNCK |
| 3.28e-109 | FFCP PHASE2:Hg19::chr5:27038708..27038730,-#_3f2eb8f7784fb99ffc74705e3e3e7576 | p2@CDH9 |
| 3.28e-109 | FFCP PHASE1:Hg19::chr5:27038708..27038730,-#_3f2eb8f7784fb99ffc74705e3e3e7576 | p2@CDH9 |
| 8.01e-109 | FFCP PHASE2:Hg19::chr19:54462010..54462060,+#_fe5347d6db7926104fe263fbdc3d4cc1 | p@chr19:54462010..54462060, + |
| 8.01e-109 | FFCP PHASE1:Hg19::chr19:54462010..54462060,+#_fe5347d6db7926104fe263fbdc3d4cc1 | p@chr19:54462010..54462060, + |
| 8.43e-109 | FFCP PHASE1:Hg19::chr9:112629781..112629806,+#_c1eff915d73da48ee9e0d09ca8c964be | p14@PALM2-AKAP2 |
| 8.43e-109 | FFCP PHASE2:Hg19::chr9:112629781..112629806,+#_c1eff915d73da48ee9e0d09ca8c964be | p14@PALM2-AKAP2 |
| 1.04e-108 | FFCP PHASE1:Hg19::chr15:80735246..80735321,+#_bcc6ec3faeb5c2b9c258a3b4f9af25ad | p3@ARNT2 |
| 1.04e-108 | FFCP PHASE2:Hg19::chr15:80735246..80735321,+#_bcc6ec3faeb5c2b9c258a3b4f9af25ad | p3@ARNT2 |
| 1.61e-108 | FFCP PHASE2:Hg19::chr11:89867681..89867695,+#_e157d2de913f20a7b221616d484a6535 | p2@NAALAD2 |
| 1.61e-108 | FFCP PHASE1:Hg19::chr11:89867681..89867695,+#_e157d2de913f20a7b221616d484a6535 | p2@NAALAD2 |
| 2.01e-108 | FFCP PHASE1:Hg19::chr1:70033108..70033121,+#_d523738c4da413a961d175127c81cd60 | p8@LRRC7 |
| 2.01e-108 | FFCP PHASE2:Hg19::chr1:70033108..70033121,+#_d523738c4da413a961d175127c81cd60 | p8@LRRC7 |
| 2.37e-108 | FFCP PHASE2:Hg19::chr11:132982177..132982181,-#_457fe7a7ed15dc71e62ad806182752a7 | p@chr11:132982177..132982181, - |
| 2.37e-108 | FFCP PHASE1:Hg19::chr11:132982177..132982181,-#_457fe7a7ed15dc71e62ad806182752a7 | p@chr11:132982177..132982181, - |
| 3.44e-108 | FFCP PHASE2:Hg19::chr6:155538093..155538109,+#_c7e17c03338dbeaa4e503bf285de4f67 | p2@TIAM2 |
| 3.44e-108 | FFCP PHASE1:Hg19::chr6:155538093..155538109,+#_c7e17c03338dbeaa4e503bf285de4f67 | p2@TIAM2 |
| 3.59e-108 | FFCP PHASE1:Hg19::chr19:54462560..54462571,+#_d08e5f8f3dee3e8d1aaabeac4299e25c | p@chr19:54462560..54462571, + |
| 3.59e-108 | FFCP PHASE2:Hg19::chr19:54462560..54462571,+#_d08e5f8f3dee3e8d1aaabeac4299e25c | p@chr19:54462560..54462571, + |
| 4.72e-108 | FFCP PHASE1:Hg19::chr17:77090555..77090587,-#_9732bd8cee779a41d372cf4e8c1260d6 | p@chr17:77090555..77090587, - |
| 4.72e-108 | FFCP PHASE2:Hg19::chr17:77090555..77090587,-#_9732bd8cee779a41d372cf4e8c1260d6 | p@chr17:77090555..77090587, - |
| 8.45e-108 | FFCP PHASE2:Hg19::chr2:8595510..8595529,-#_71f9ac2ed189ffa2c473cd980b612378 | p@chr2:8595510..8595529, - |
| 8.45e-108 | FFCP PHASE1:Hg19::chr2:8595510..8595529,-#_71f9ac2ed189ffa2c473cd980b612378 | p@chr2:8595510..8595529, - |
| 1.02e-107 | FFCP PHASE1:Hg19::chr20:1975298..1975316,-#_e4d0d5b0a791c75c36e0ff36492eb303 | p2@PDYN |
| 1.02e-107 | FFCP PHASE2:Hg19::chr20:1975298..1975316,-#_e4d0d5b0a791c75c36e0ff36492eb303 | p2@PDYN |
| 1.13e-107 | FFCP PHASE2:Hg19::chr4:46392290..46392324,-#_c605b28a8a3f547f3682c38d06dfb4d0 | p13@GABRA2 |
| 1.13e-107 | FFCP PHASE1:Hg19::chr4:46392290..46392324,-#_c605b28a8a3f547f3682c38d06dfb4d0 | p13@GABRA2 |
| 1.19e-107 | FFCP PHASE2:Hg19::chr16:56390359..56390376,+#_62fc32218f61147aff3748c65514db73 | p@chr16:56390359..56390376, + |
| 1.19e-107 | FFCP PHASE1:Hg19::chr16:56390359..56390376,+#_62fc32218f61147aff3748c65514db73 | p@chr16:56390359..56390376, + |
| 1.24e-107 | FFCP PHASE1:Hg19::chr1:156119798..156119834,+#_8960ed15271313cff6534a007e6ee2eb | p5@SEMA4A |
| 1.24e-107 | FFCP PHASE2:Hg19::chr1:156119798..156119834,+#_8960ed15271313cff6534a007e6ee2eb | p5@SEMA4A |
| 1.31e-107 | FFCP PHASE1:Hg19::chr7:54609764..54609789,+#_3346613bbd8927dc5296f9c29f718779 | p8@VSTM2A |
| 1.31e-107 | FFCP PHASE2:Hg19::chr7:54609764..54609789,+#_3346613bbd8927dc5296f9c29f718779 | p8@VSTM2A |
| 1.91e-107 | FFCP PHASE2:Hg19::chr12:14134689..14134704,-#_5ecef83b04cee1c07016494bd38584de | p@chr12:14134689..14134704, - |
| 1.91e-107 | FFCP PHASE1:Hg19::chr12:14134689..14134704,-#_5ecef83b04cee1c07016494bd38584de | p@chr12:14134689..14134704, - |
| 2.32e-107 | FFCP PHASE1:Hg19::chr12:14133820..14133830,-#_697dbd8e3bc58090211bf3f611961394 | p@chr12:14133820..14133830, - |
| 2.32e-107 | FFCP PHASE2:Hg19::chr12:14133820..14133830,-#_697dbd8e3bc58090211bf3f611961394 | p@chr12:14133820..14133830, - |
| 2.8e-107 | FFCP PHASE2:Hg19::chr12:57957885..57957898,+#_96eb1dc7e752556015b1aaf162d16e81 | p@chr12:57957885..57957898, + |
| 2.8e-107 | FFCP PHASE1:Hg19::chr12:57957885..57957898,+#_96eb1dc7e752556015b1aaf162d16e81 | p@chr12:57957885..57957898, + |
| 3.92e-107 | FFCP PHASE2:Hg19::chr6:101847075..101847092,+#_90f6cd4f4a57b6790940e9c0d6270ba7 | p5@GRIK2 |
| 3.92e-107 | FFCP PHASE1:Hg19::chr6:101847075..101847092,+#_90f6cd4f4a57b6790940e9c0d6270ba7 | p5@GRIK2 |
| 4.4e-107 | FFCP PHASE2:Hg19::chr1:2005182..2005194,+#_aac510311ee1f24f7dc95fd6414433ac | p8@PRKCZ |
| 4.4e-107 | FFCP PHASE1:Hg19::chr1:2005182..2005194,+#_aac510311ee1f24f7dc95fd6414433ac | p8@PRKCZ |
| 8.12e-107 | FFCP PHASE2:Hg19::chr20:34743645..34743687,-#_be291e4a3c310afd771a7f192df4f76a | p1@ENST00000441208, p1@uc002xfa.1 |
| 8.12e-107 | FFCP PHASE1:Hg19::chr20:34743645..34743687,-#_be291e4a3c310afd771a7f192df4f76a | p1@ENST00000441208, p1@uc002xfa.1 |
| 8.19e-107 | FFCP PHASE1:Hg19::chr2:196990526..196990535,-#_3eb3f42bc9220e83cc4de4cefb8929fa | p@chr2:196990526..196990535, - |
| 8.19e-107 | FFCP PHASE2:Hg19::chr2:196990526..196990535,-#_3eb3f42bc9220e83cc4de4cefb8929fa | p@chr2:196990526..196990535, - |
| 8.66e-107 | FFCP PHASE2:Hg19::chrX:13835312..13835321,-#_fb33dc6dec46e70ad0ac91479688b8df | p9@GPM6B |
| 8.66e-107 | FFCP PHASE1:Hg19::chrX:13835312..13835321,-#_fb33dc6dec46e70ad0ac91479688b8df | p9@GPM6B |
| 1.08e-106 | FFCP PHASE2:Hg19::chr16:24267634..24267671,+#_8ff4f39aeee97f11605e3a1af860ff19 | p2@CACNG3 |
| 1.08e-106 | FFCP PHASE1:Hg19::chr16:24267634..24267671,+#_8ff4f39aeee97f11605e3a1af860ff19 | p2@CACNG3 |
