FFCP PHASE2:Hg19::chr12:50616122..50616144,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:51474 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:24636 |TSScla...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=51474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=24636 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=F8VQE1 | ||
|association_with_transcript=0bp_to_ENST00000552823,ENST00000552909_5end | |association_with_transcript=0bp_to_ENST00000552823,ENST00000552909_5end | ||
|cluster_id=chr12:50616122..50616144,- | |cluster_id=chr12:50616122..50616144,- | ||
Latest revision as of 18:29, 18 September 2015
| Short description: | p3@LIMA1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_LIMA1_5end |
| Coexpression cluster: | C3288_Fibroblast_Urothelial_Preadipocyte_mesothelioma_Mallassezderived_Mesothelial_alveolar |
| Association with transcript: | 0bp_to_ENST00000552823, ENST00000552909_5end |
| EntrezGene: | LIMA1 |
| HGNC: | 24636 |
| UniProt: | F8VQE1 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@LIMA1 |
|---|
0.0
2.5
5.0
7.5
10.0
12.5
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| fibroblast | 1.77e-11 | 76 |
| mesothelial cell | 4.68e-10 | 19 |
| skin fibroblast | 2.63e-07 | 23 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| surface structure | 5.77e-10 | 99 |
| skin of body | 5.15e-08 | 41 |
| integument | 6.56e-07 | 46 |
| integumental system | 6.56e-07 | 46 |
Showing 1 to 4 of 4 entries
