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(Created page with "{{DOID |id=DOID:5409 |name=lung small cell carcinoma |namespace= |def= |xref= |is_a=DOID:3905 |synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_3...")
 
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|id=DOID:5409
|id=DOID:5409
|name=lung small cell carcinoma
|name=lung small cell carcinoma
|namespace=
|namespace=disease_ontology
|def=
|def=
|xref=
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925
|is_a=DOID:3905
|is_a=DOID:3905
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
|comment=
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
|alt_id=
|disjoint_from=
|disjoint_from=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 14:01, 11 June 2012

Name:lung small cell carcinoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D055752
NCI:C4917
OMIM:182280
SNOMEDCT_2010_1_31:254632001
SNOMEDCT_2010_1_31:254633006

UMLS_CUI:C0149925
Synonyms: "Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006]
"SCLC" EXACT [CSP2005:2017-6589]
"small cell carcinoma of lung" RELATED []
"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001]
"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:3905(lung carcinoma)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5409 (lung small cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
1.55e-98FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31p@chr6:125378873..125378876, +
2.4e-66FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
2.4e-66FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93p@chr8:40525350..40525354, -
3.1e-50FFCP PHASE2:Hg19::chr10:66459172..66459188,-#_5be4114e7d0131f457d60e83d77a108dp@chr10:66459172..66459188, -
3.1e-50FFCP PHASE1:Hg19::chr3:145094664..145094665,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:145094664..145094665, +
3.1e-50FFCP PHASE2:Hg19::chrX:97443927..97443947,+#_5be4114e7d0131f457d60e83d77a108dp@chrX:97443927..97443947, +
3.1e-50FFCP PHASE2:Hg19::chr5:79097476..79097484,+#_5be4114e7d0131f457d60e83d77a108dp@chr5:79097476..79097484, +
3.1e-50FFCP PHASE1:Hg19::chr16:7428243..7428259,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:7428243..7428259, +
3.1e-50FFCP PHASE2:Hg19::chr1:199134722..199134729,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:199134722..199134729, +
3.1e-50FFCP PHASE1:Hg19::chr7:120378721..120378730,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:120378721..120378730, -
3.1e-50FFCP PHASE1:Hg19::chr3:86929211..86929219,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:86929211..86929219, +
3.1e-50FFCP PHASE1:Hg19::chr2:220607845..220607848,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:220607845..220607848, +
3.1e-50FFCP PHASE2:Hg19::chr8:97961686..97961696,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97961686..97961696, -
3.1e-50FFCP PHASE2:Hg19::chr7:111234799..111234807,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:111234799..111234807, -
3.1e-50FFCP PHASE1:Hg19::chr2:135119636..135119642,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:135119636..135119642, +
3.1e-50FFCP PHASE2:Hg19::chr4:185426203..185426209,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:185426203..185426209, -
3.1e-50FFCP PHASE1:Hg19::chr15:96959907..96959930,+#_5be4114e7d0131f457d60e83d77a108dp@chr15:96959907..96959930, +
3.1e-50FFCP PHASE2:Hg19::chr3:86703174..86703181,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:86703174..86703181, -
3.1e-50FFCP PHASE2:Hg19::chr2:220594730..220594748,+#_5be4114e7d0131f457d60e83d77a108dp2@ENST00000442416
3.1e-50FFCP PHASE2:Hg19::chr1:100110851..100110860,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:100110851..100110860, +
3.1e-50FFCP PHASE2:Hg19::chr11:20362300..20362305,+#_5be4114e7d0131f457d60e83d77a108dp@chr11:20362300..20362305, +
3.1e-50FFCP PHASE1:Hg19::chr8:98075951..98075959,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98075951..98075959, -
3.1e-50FFCP PHASE1:Hg19::chr12:79756320..79756329,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:79756320..79756329, -
3.1e-50FFCP PHASE1:Hg19::chr8:139510692..139510697,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:139510692..139510697, -
3.1e-50FFCP PHASE2:Hg19::chr8:98070371..98070384,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98070371..98070384, -
3.1e-50FFCP PHASE1:Hg19::chr2:97625602..97625628,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97625602..97625628, -
3.1e-50FFCP PHASE2:Hg19::chr17:39140411..39140419,-#_5be4114e7d0131f457d60e83d77a108dp5@KRT40
3.1e-50FFCP PHASE1:Hg19::chr10:29212181..29212188,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:29212181..29212188, +
3.1e-50FFCP PHASE1:Hg19::chr12:27925654..27925663,-#_5be4114e7d0131f457d60e83d77a108dp@chr12:27925654..27925663, -
3.1e-50FFCP PHASE2:Hg19::chr4:6324309..6324314,-#_5be4114e7d0131f457d60e83d77a108dp43@PPP2R2C
3.1e-50FFCP PHASE1:Hg19::chr19:46763803..46763808,-#_5be4114e7d0131f457d60e83d77a108dp@chr19:46763803..46763808, -
3.1e-50FFCP PHASE2:Hg19::chr6:154858693..154858698,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:154858693..154858698, +
3.1e-50FFCP PHASE2:Hg19::chr19:46763326..46763349,+#_5be4114e7d0131f457d60e83d77a108dp@chr19:46763326..46763349, +
3.1e-50FFCP PHASE2:Hg19::chr14:57127856..57127863,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:57127856..57127863, +
3.1e-50FFCP PHASE2:Hg19::chr16:66088105..66088108,-#_5be4114e7d0131f457d60e83d77a108dp@chr16:66088105..66088108, -
3.1e-50FFCP PHASE1:Hg19::chr4:169849979..169849990,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:169849979..169849990, -
3.1e-50FFCP PHASE2:Hg19::chr8:85893922..85893940,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:85893922..85893940, +
3.1e-50FFCP PHASE1:Hg19::chr2:130568628..130568649,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:130568628..130568649, +
3.1e-50FFCP PHASE2:Hg19::chr2:208001650..208001675,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:208001650..208001675, -
3.1e-50FFCP PHASE1:Hg19::chr14:60194331..60194336,-#_5be4114e7d0131f457d60e83d77a108dp36@RTN1
3.1e-50FFCP PHASE2:Hg19::chr2:130564567..130564572,-#_5be4114e7d0131f457d60e83d77a108dp2@LOC100131048
3.1e-50FFCP PHASE2:Hg19::chr15:85564362..85564385,+#_5be4114e7d0131f457d60e83d77a108dp@chr15:85564362..85564385, +
3.1e-50FFCP PHASE1:Hg19::chr8:98015305..98015315,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98015305..98015315, -
3.1e-50FFCP PHASE1:Hg19::chr7:79839919..79839924,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:79839919..79839924, +
3.1e-50FFCP PHASE2:Hg19::chr8:97972117..97972120,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:97972117..97972120, -
3.1e-50FFCP PHASE2:Hg19::chr5:134915254..134915270,-#_5be4114e7d0131f457d60e83d77a108dp3@CXCL14
3.1e-50FFCP PHASE2:Hg19::chr17:79970753..79970763,+#_5be4114e7d0131f457d60e83d77a108dp15@ASPSCR1
3.1e-50FFCP PHASE1:Hg19::chrX:135764624..135764645,-#_5be4114e7d0131f457d60e83d77a108dp@chrX:135764624..135764645, -
3.1e-50FFCP PHASE1:Hg19::chr7:84390545..84390550,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:84390545..84390550, +
3.1e-50FFCP PHASE1:Hg19::chr2:97626185..97626188,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626185..97626188, -
3.1e-50FFCP PHASE2:Hg19::chrX:135761853..135761876,-#_5be4114e7d0131f457d60e83d77a108dp@chrX:135761853..135761876, -
3.1e-50FFCP PHASE2:Hg19::chr16:13010590..13010593,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:13010590..13010593, +
3.1e-50FFCP PHASE1:Hg19::chr11:67402354..67402359,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:67402354..67402359, -
3.1e-50FFCP PHASE2:Hg19::chr9:129291797..129291800,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:129291797..129291800, -
3.1e-50FFCP PHASE1:Hg19::chr10:65730100..65730104,-#_5be4114e7d0131f457d60e83d77a108dp@chr10:65730100..65730104, -
3.1e-50FFCP PHASE1:Hg19::chr7:26590606..26590616,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26590606..26590616, -
3.1e-50FFCP PHASE2:Hg19::chrX:69542573..69542578,+#_5be4114e7d0131f457d60e83d77a108dp@chrX:69542573..69542578, +
3.1e-50FFCP PHASE2:Hg19::chr7:26590563..26590574,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:26590563..26590574, -
3.1e-50FFCP PHASE1:Hg19::chr8:57525544..57525580,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:57525544..57525580, +
3.1e-50FFCP PHASE1:Hg19::chr6:998859..998863,-#_5be4114e7d0131f457d60e83d77a108dp@chr6:998859..998863, -
3.1e-50FFCP PHASE1:Hg19::chr3:77129779..77129782,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:77129779..77129782, +
3.1e-50FFCP PHASE1:Hg19::chr2:103235132..103235142,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:103235132..103235142, +
3.1e-50FFCP PHASE1:Hg19::chr14:59113338..59113345,+#_5be4114e7d0131f457d60e83d77a108dp@chr14:59113338..59113345, +
3.1e-50FFCP PHASE2:Hg19::chr2:103235035..103235044,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:103235035..103235044, +
3.1e-50FFCP PHASE2:Hg19::chr11:86502231..86502240,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:86502231..86502240, -
3.1e-50FFCP PHASE2:Hg19::chr8:139510692..139510697,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:139510692..139510697, -
3.1e-50FFCP PHASE1:Hg19::chr2:68113370..68113379,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:68113370..68113379, -
3.1e-50FFCP PHASE2:Hg19::chr5:134907210..134907215,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:134907210..134907215, -
3.1e-50FFCP PHASE2:Hg19::chr3:150914241..150914244,+#_5be4114e7d0131f457d60e83d77a108dp@chr3:150914241..150914244, +
3.1e-50FFCP PHASE2:Hg19::chr1:225650299..225650317,-#_5be4114e7d0131f457d60e83d77a108dp@chr1:225650299..225650317, -
3.1e-50FFCP PHASE2:Hg19::chr13:92571088..92571098,-#_5be4114e7d0131f457d60e83d77a108dp@chr13:92571088..92571098, -
3.1e-50FFCP PHASE1:Hg19::chr10:129704512..129704515,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129704512..129704515, +
3.1e-50FFCP PHASE2:Hg19::chr10:129703392..129703416,+#_5be4114e7d0131f457d60e83d77a108dp@chr10:129703392..129703416, +
3.1e-50FFCP PHASE1:Hg19::chr7:138721040..138721056,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:138721040..138721056, +
3.1e-50FFCP PHASE1:Hg19::chr4:37653629..37653673,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:37653629..37653673, -
3.1e-50FFCP PHASE1:Hg19::chr12:84664700..84664710,+#_5be4114e7d0131f457d60e83d77a108dp1@ENST00000547882
3.1e-50FFCP PHASE2:Hg19::chr2:97626588..97626595,-#_5be4114e7d0131f457d60e83d77a108dp@chr2:97626588..97626595, -
3.1e-50FFCP PHASE1:Hg19::chr12:46124855..46124858,+#_5be4114e7d0131f457d60e83d77a108dp@chr12:46124855..46124858, +
3.1e-50FFCP PHASE1:Hg19::chr7:95776285..95776292,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:95776285..95776292, -
3.1e-50FFCP PHASE1:Hg19::chr5:28572013..28572023,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:28572013..28572023, -
3.1e-50FFCP PHASE2:Hg19::chr5:28571958..28571968,-#_5be4114e7d0131f457d60e83d77a108dp@chr5:28571958..28571968, -
3.1e-50FFCP PHASE2:Hg19::chr3:102635409..102635414,-#_5be4114e7d0131f457d60e83d77a108dp@chr3:102635409..102635414, -
3.1e-50FFCP PHASE1:Hg19::chr13:25269257..25269262,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:25269257..25269262, +
3.1e-50FFCP PHASE2:Hg19::chr1:81686906..81686911,+#_5be4114e7d0131f457d60e83d77a108dp@chr1:81686906..81686911, +
3.1e-50FFCP PHASE1:Hg19::chr9:226208..226216,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:226208..226216, -
3.1e-50FFCP PHASE1:Hg19::chr8:116215608..116215615,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:116215608..116215615, +
3.1e-50FFCP PHASE2:Hg19::chr7:44574327..44574332,-#_5be4114e7d0131f457d60e83d77a108dp@chr7:44574327..44574332, -
3.1e-50FFCP PHASE2:Hg19::chr16:83649482..83649491,+#_5be4114e7d0131f457d60e83d77a108dp@chr16:83649482..83649491, +
3.1e-50FFCP PHASE2:Hg19::chr13:76549637..76549662,+#_5be4114e7d0131f457d60e83d77a108dp@chr13:76549637..76549662, +
3.1e-50FFCP PHASE1:Hg19::chr9:9763035..9763040,-#_5be4114e7d0131f457d60e83d77a108dp@chr9:9763035..9763040, -
3.1e-50FFCP PHASE1:Hg19::chr8:82275651..82275662,+#_5be4114e7d0131f457d60e83d77a108dp@chr8:82275651..82275662, +
3.1e-50FFCP PHASE1:Hg19::chr3:95401649..95401655,-#_5be4114e7d0131f457d60e83d77a108dp3@ENST00000463799
3.1e-50FFCP PHASE2:Hg19::chr7:120381610..120381618,+#_5be4114e7d0131f457d60e83d77a108dp@chr7:120381610..120381618, +
3.1e-50FFCP PHASE2:Hg19::chr2:135120480..135120481,+#_5be4114e7d0131f457d60e83d77a108dp@chr2:135120480..135120481, +
3.1e-50FFCP PHASE2:Hg19::chr14:60194446..60194457,-#_5be4114e7d0131f457d60e83d77a108dp16@RTN1
3.1e-50FFCP PHASE1:Hg19::chr11:41519057..41519065,-#_5be4114e7d0131f457d60e83d77a108dp@chr11:41519057..41519065, -
3.1e-50FFCP PHASE1:Hg19::chr8:98108435..98108438,-#_5be4114e7d0131f457d60e83d77a108dp@chr8:98108435..98108438, -
3.1e-50FFCP PHASE1:Hg19::chr6:125547084..125547089,+#_5be4114e7d0131f457d60e83d77a108dp@chr6:125547084..125547089, +
3.1e-50FFCP PHASE1:Hg19::chr4:107955476..107955508,-#_5be4114e7d0131f457d60e83d77a108dp@chr4:107955476..107955508, -

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