UBERON:0004199: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0004199
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Revision as of 17:20, 15 June 2012
| Name: | S-shaped body | ||
|---|---|---|---|
| Definition: | "The S-shaped body is the successor of the comma-shaped body that contributes to the morphogenesis of the nephron" [GO:0072050] | ||
| Xrefs: |
| ||
| Synonyms: | "stage II nephron" EXACT [1] | ||
| Comments: | TODO |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure),UBERON:0004120(mesoderm-derived structure),UBERON:0006554(urinary system structure) |
|---|---|
| develops_from: | UBERON:0004198(comma-shaped body) |
| part_of: | UBERON:0001285(nephron) |
Children
| develops from: | UBERON:0001230 (glomerular capsule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004199 (S-shaped body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 6.87e-64 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_954681b29b21f430b5af02527035120f | p@chr2:120409486..120409492, + |
| 6.87e-64 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_954681b29b21f430b5af02527035120f | p@chr2:120409486..120409492, + |
| 9.62e-40 | FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_2c5a060b30139e4155d17ae5a0cbfaad | p1@ENST00000413103 |
| 9.62e-40 | FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_2c5a060b30139e4155d17ae5a0cbfaad | p1@ENST00000413103 |
| 1.16e-36 | FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_518cf6ad8720dd678b9ec7219c624b4d | p@chr17:79426453..79426462, + |
| 1.16e-36 | FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_518cf6ad8720dd678b9ec7219c624b4d | p@chr17:79426453..79426462, + |
| 1.31e-36 | FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_0d71cf95872b2b66cba9fdacba45db97 | p@chr8:77557753..77557755, - |
| 1.31e-36 | FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_0d71cf95872b2b66cba9fdacba45db97 | p@chr8:77557753..77557755, - |
| 5.58e-32 | FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_816ae336356a371cad55a2f2e879f72f | p6@TINAGL1 |
| 5.58e-32 | FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_816ae336356a371cad55a2f2e879f72f | p6@TINAGL1 |
| 1.53e-30 | FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_594361ce5f5c0bfddaed199d684f01c9 | p9@FURIN |
| 1.53e-30 | FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_594361ce5f5c0bfddaed199d684f01c9 | p9@FURIN |
| 3.83e-30 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_5d6b6b69eeac552122d3e31c7fa68936 | p7@LRRN4 |
| 3.83e-30 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_5d6b6b69eeac552122d3e31c7fa68936 | p7@LRRN4 |
| 1.78e-29 | FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_2237ae462165bc78db48277cd7b2762f | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_2237ae462165bc78db48277cd7b2762f | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_2237ae462165bc78db48277cd7b2762f | p7@OTOF |
| 1.78e-29 | FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_2237ae462165bc78db48277cd7b2762f | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_2237ae462165bc78db48277cd7b2762f | p@chr2:26700331..26700340, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_2237ae462165bc78db48277cd7b2762f | p@chr1:42777312..42777314, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_2237ae462165bc78db48277cd7b2762f | p7@OTOF |
| 1.78e-29 | FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_2237ae462165bc78db48277cd7b2762f | p@chr6:18225523..18225534, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_2237ae462165bc78db48277cd7b2762f | p@chr22:47030082..47030087, + |
| 1.78e-29 | FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_2237ae462165bc78db48277cd7b2762f | p@chr2:26700331..26700340, - |
| 7.96e-27 | FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_a9863de7d6620ba981aadd308168dd01 | p@chr10:3477893..3477912, - |
| 7.96e-27 | FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_a9863de7d6620ba981aadd308168dd01 | p@chr10:3477893..3477912, - |
| 6.29e-26 | FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_d3dbc84f41c4ae282838a5feab64fee3 | p@chr1:172926077..172926120, - |
| 6.29e-26 | FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_d3dbc84f41c4ae282838a5feab64fee3 | p@chr1:172926077..172926120, - |
| 6.32e-26 | FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_551e00fa523b0eb8af695fd9162f72a7 | p5@APLN |
| 6.32e-26 | FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_551e00fa523b0eb8af695fd9162f72a7 | p5@APLN |
| 9.89e-26 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_6871d8c60a94f95f6242032a77fb57ee | p@chr2:693380..693398, + |
| 9.89e-26 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_6871d8c60a94f95f6242032a77fb57ee | p@chr2:693380..693398, + |
| 1.28e-23 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_409e7e2398097c35ba5478e93bb1c478 | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_409e7e2398097c35ba5478e93bb1c478 | p@chr6:84849252..84849259, + |
| 1.28e-23 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_409e7e2398097c35ba5478e93bb1c478 | p@chr2:133426030..133426041, - |
| 1.28e-23 | FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_409e7e2398097c35ba5478e93bb1c478 | p@chr6:84849252..84849259, + |
| 1.44e-23 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_3d8ff26da12362511243a49fc639b9af | p23@TTC39A |
| 1.44e-23 | FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_3d8ff26da12362511243a49fc639b9af | p10@TRIL |
| 1.44e-23 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_3d8ff26da12362511243a49fc639b9af | p23@TTC39A |
| 1.44e-23 | FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_3d8ff26da12362511243a49fc639b9af | p10@TRIL |
| 1.61e-23 | FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_f303c295763ada83f73c06bc157f3481 | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_f303c295763ada83f73c06bc157f3481 | p@chr15:85403302..85403304, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_f303c295763ada83f73c06bc157f3481 | p@chr7:4051097..4051112, + |
| 1.61e-23 | FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_f303c295763ada83f73c06bc157f3481 | p@chr15:85403302..85403304, + |
| 1.8e-23 | FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_d2a6fe3689744b923652da0fbbb37f0f | p@chr16:2141529..2141537, + |
| 1.8e-23 | FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_d2a6fe3689744b923652da0fbbb37f0f | p@chr16:2141529..2141537, + |
| 2.92e-22 | FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_cfbe9a97a2df2ea0f8be7c6e2ad3011a | p@chr5:74244100..74244117, + |
| 2.92e-22 | FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_cfbe9a97a2df2ea0f8be7c6e2ad3011a | p@chr5:74244100..74244117, + |
| 5.69e-22 | FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_5b89e25addf22f06336c264bb58099f3 | p@chr5:148651758..148651769, - |
| 5.69e-22 | FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_5b89e25addf22f06336c264bb58099f3 | p@chr5:148651758..148651769, - |
| 2.9e-21 | FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_bfb7f1bc7ab83963987a326b33dc39fb | p@chr16:86768403..86768437, + |
| 2.9e-21 | FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_bfb7f1bc7ab83963987a326b33dc39fb | p@chr16:86768403..86768437, + |
| 4.78e-21 | FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_dee83978df4c69b3ce89782b8484dfc0 | p@chr17:2076002..2076026, - |
| 4.78e-21 | FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_dee83978df4c69b3ce89782b8484dfc0 | p@chr17:2076002..2076026, - |
| 1.26e-20 | FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_a3565658de6c321f72ac7f430664da76 | p3@FAM167B |
| 1.26e-20 | FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_a3565658de6c321f72ac7f430664da76 | p3@FAM167B |
| 2.32e-20 | FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_f547dfde353c8fe20038a531562d53c9 | p@chr11:124628392..124628427, - |
| 2.32e-20 | FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_f547dfde353c8fe20038a531562d53c9 | p@chr11:124628392..124628427, - |
| 3.42e-20 | FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_22e00b66ae6bdc07672989f083a5912a | p1@ENST00000487339 |
| 3.42e-20 | FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_22e00b66ae6bdc07672989f083a5912a | p1@ENST00000487339 |
| 3.44e-20 | FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_8817adfc0a79d906e61fae1ced29b1cd | p@chr19:47231340..47231383, - |
| 3.44e-20 | FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_8817adfc0a79d906e61fae1ced29b1cd | p@chr19:47231340..47231383, - |
| 3.58e-20 | FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_391cc1db4009e9f2893bfc8ff66fdb21 | p@chr19:1826957..1826984, - |
| 3.58e-20 | FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_391cc1db4009e9f2893bfc8ff66fdb21 | p@chr19:1826957..1826984, - |
| 4.39e-20 | FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_7720a44b90387e6ebe441b12b4f238f2 | p@chr4:38057595..38057624, - |
| 4.39e-20 | FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_7720a44b90387e6ebe441b12b4f238f2 | p@chr4:38057595..38057624, - |
| 7.13e-20 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_72a0964b85f8864269f30b5c8eaf6b06 | p@chr2:133426106..133426117, - |
| 7.13e-20 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_72a0964b85f8864269f30b5c8eaf6b06 | p@chr2:133426106..133426117, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_836b9370460ff97592f330884a4e9518 | p@chr15:36653709..36653720, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_836b9370460ff97592f330884a4e9518 | p@chr9:35753821..35753835, - |
| 7.84e-20 | FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_836b9370460ff97592f330884a4e9518 | p@chr9:35753821..35753835, - |
| 7.84e-20 | FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_836b9370460ff97592f330884a4e9518 | p@chr15:36653709..36653720, - |
| 8.62e-20 | FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_7829e0b2821b95d61f0ddddb7152a449 | p@chr4:145568170..145568180, - |
| 8.62e-20 | FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_7829e0b2821b95d61f0ddddb7152a449 | p@chr4:145568170..145568180, - |
| 1.04e-19 | FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_0aa50e11e37be2296f44ba19a1f9c345 | p1@WDR87 |
| 1.04e-19 | FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_0aa50e11e37be2296f44ba19a1f9c345 | p1@WDR87 |
| 1.15e-19 | FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_fada0f033f737bfd70bb5489cd4149f8 | p@chr14:91270270..91270281, - |
| 1.15e-19 | FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_fada0f033f737bfd70bb5489cd4149f8 | p@chr14:91270270..91270281, - |
| 2.44e-19 | FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_c180df850dd9c773ccf90c6b30237656 | p6@ACVRL1 |
| 2.44e-19 | FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_c180df850dd9c773ccf90c6b30237656 | p6@ACVRL1 |
| 3.27e-19 | FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_20be9bd401a2a5ae239692a54a5c259c | p@chr3:43538305..43538325, - |
| 3.27e-19 | FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_20be9bd401a2a5ae239692a54a5c259c | p@chr3:43538305..43538325, - |
| 4.64e-19 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_ee5a21f308ea390f8bc8f9d19b30ca55 | p@chr17:171147..171161, + |
| 4.64e-19 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_ee5a21f308ea390f8bc8f9d19b30ca55 | p@chr17:171147..171161, + |
| 5.39e-19 | FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_53655d5bcf4a1e22047bb843acdcc6c0 | p@chr1:22211913..22211920, + |
| 5.39e-19 | FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_53655d5bcf4a1e22047bb843acdcc6c0 | p@chr1:22211913..22211920, + |
| 1.99e-18 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_8a5f5391f5561cafb1a32664d1a9b75d | p7@HOXA10 |
| 1.99e-18 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_8a5f5391f5561cafb1a32664d1a9b75d | p7@HOXA10 |
| 2.69e-18 | FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_eb809657c7d627653dc3acef223e5647 | p3@TINAGL1 |
| 2.69e-18 | FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_eb809657c7d627653dc3acef223e5647 | p3@TINAGL1 |
| 4.1e-18 | FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_7acc40238fdfeb6425c9fdc34063f279 | p17@CTGF |
| 4.1e-18 | FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_7acc40238fdfeb6425c9fdc34063f279 | p17@CTGF |
| 5.7e-18 | FFCP PHASE2:Hg19::chr11:940729..940745,+#_303cdaa4d9144fd157742735c6adffb8 | p5@AP2A2 |
| 5.7e-18 | FFCP PHASE1:Hg19::chr11:940729..940745,+#_303cdaa4d9144fd157742735c6adffb8 | p5@AP2A2 |
| 6.5e-18 | FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_e16abda9856f5f49c22ab00cd767852e | p@chr19:42007093..42007107, - |
| 6.5e-18 | FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_e16abda9856f5f49c22ab00cd767852e | p@chr19:42007093..42007107, - |
| 6.99e-18 | FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_7e16c2de0893c20e38a9f37386f6e72a | p@chrX:128781853..128781866, - |
| 6.99e-18 | FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_7e16c2de0893c20e38a9f37386f6e72a | p@chrX:128781853..128781866, - |
| 1.24e-17 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_ac98d64597fee33d754a64eea9715ff4 | p@chr16:86604624..86604648, + |
| 1.24e-17 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_ac98d64597fee33d754a64eea9715ff4 | p@chr16:86604624..86604648, + |
