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|namespace=
|namespace=
|def="A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
|def="A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
|xref=ZFA:0005289
|xref=TAO:0005289;;ZFA:0005289
|is_a=UBERON:0000058;;UBERON:0004120;;UBERON:0006554
|is_a=UBERON:0000058;;UBERON:0006554
|synonym=
|synonym=
|comment=in ZFA this is defined as part of mesonephros
|comment=in ZFA this is defined as part of mesonephros
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002113
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:07, 26 June 2012

Name:renal duct
Definition:"A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
Xrefs:
links:

TAO:0005289

ZFA:0005289
Comments:in ZFA this is defined as part of mesonephros

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000058(duct),UBERON:0006554(urinary system structure)



Children

is a:UBERON:0009201 (nephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006553 (renal duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_c996e4a6607e53096692777a1b938268p4@Spink12
1.58e-86FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_c996e4a6607e53096692777a1b938268p4@Spink12
3.28e-58FFCP PHASE2:Mm9::chr5:35930706..35930717,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:35930706..35930717, +
3.28e-58FFCP PHASE1:Mm9::chrX:164787162..164787188,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:164787162..164787188, -
3.28e-58FFCP PHASE1:Mm9::chr5:31379437..31379448,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379437..31379448, +
3.28e-58FFCP PHASE1:Mm9::chr17:24670830..24670845,+#_9b3409e528ac533dfd8475c41e23287dp@chr17:24670830..24670845, +
3.28e-58FFCP PHASE2:Mm9::chr1:87922778..87922788,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:87922778..87922788, +
3.28e-58FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:39707572..39707583, +
3.28e-58FFCP PHASE2:Mm9::chr7:65995799..65995810,-#_9b3409e528ac533dfd8475c41e23287dp@chr7:65995799..65995810, -
3.28e-58FFCP PHASE1:Mm9::chr12:16664775..16664784,+#_9b3409e528ac533dfd8475c41e23287dp@chr12:16664775..16664784, +
3.28e-58FFCP PHASE2:Mm9::chr11:98567868..98567884,-#_9b3409e528ac533dfd8475c41e23287dp5@Med24
3.28e-58FFCP PHASE2:Mm9::chrX:130496166..130496188,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:130496166..130496188, -
3.28e-58FFCP PHASE1:Mm9::chr11:59845404..59845416,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:59845404..59845416, -
3.28e-58FFCP PHASE2:Mm9::chr14:63611214..63611229,+#_9b3409e528ac533dfd8475c41e23287dp@chr14:63611214..63611229, +
3.28e-58FFCP PHASE2:Mm9::chr5:31379845..31379855,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379845..31379855, +
3.28e-58FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:130496260..130496269, -
3.28e-58FFCP PHASE1:Mm9::chr9:26785438..26785446,-#_9b3409e528ac533dfd8475c41e23287dp3@Acad8
3.28e-58FFCP PHASE2:Mm9::chr11:17224952..17224968,+#_9b3409e528ac533dfd8475c41e23287dp@chr11:17224952..17224968, +
3.28e-58FFCP PHASE2:Mm9::chr4:137325863..137325870,-#_9b3409e528ac533dfd8475c41e23287dp15@Alpl
3.28e-58FFCP PHASE1:Mm9::chr13:21379125..21379144,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379125..21379144, -
3.28e-58FFCP PHASE1:Mm9::chr6:83487114..83487124,-#_9b3409e528ac533dfd8475c41e23287dp@chr6:83487114..83487124, -
3.28e-58FFCP PHASE2:Mm9::chr8:23045782..23045791,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:23045782..23045791, +
3.28e-58FFCP PHASE2:Mm9::chr13:21378766..21378781,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:21378766..21378781, +
3.28e-58FFCP PHASE1:Mm9::chr16:92995710..92995753,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:92995710..92995753, +
3.28e-58FFCP PHASE2:Mm9::chr11:101959159..101959163,+#_9b3409e528ac533dfd8475c41e23287dp@chr11:101959159..101959163, +
3.28e-58FFCP PHASE1:Mm9::chr14:63630486..63630493,+#_9b3409e528ac533dfd8475c41e23287dp5@Defb43
3.28e-58FFCP PHASE1:Mm9::chr10:127470322..127470326,+#_9b3409e528ac533dfd8475c41e23287dp@chr10:127470322..127470326, +
3.28e-58FFCP PHASE2:Mm9::chr2:152302739..152302742,+#_9b3409e528ac533dfd8475c41e23287dp5@Defb20
3.28e-58FFCP PHASE2:Mm9::chr11:53955299..53955306,+#_9b3409e528ac533dfd8475c41e23287dp@chr11:53955299..53955306, +
3.28e-58FFCP PHASE2:Mm9::chr6:147624258..147624285,-#_9b3409e528ac533dfd8475c41e23287dp@chr6:147624258..147624285, -
3.28e-58FFCP PHASE1:Mm9::chr12:110132148..110132154,+#_9b3409e528ac533dfd8475c41e23287dp3@Wdr25
3.28e-58FFCP PHASE2:Mm9::chrX:50280199..50280211,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:50280199..50280211, +
3.28e-58FFCP PHASE2:Mm9::chr13:21381777..21381789,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21381777..21381789, -
3.28e-58FFCP PHASE1:Mm9::chr11:53938008..53938022,+#_9b3409e528ac533dfd8475c41e23287dp11@P4ha2
3.28e-58FFCP PHASE1:Mm9::chr10:61976287..61976297,-#_9b3409e528ac533dfd8475c41e23287dp@chr10:61976287..61976297, -
3.28e-58FFCP PHASE1:Mm9::chrX:10488683..10488691,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:10488683..10488691, +
3.28e-58FFCP PHASE1:Mm9::chr9:26719400..26719404,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:26719400..26719404, -
3.28e-58FFCP PHASE2:Mm9::chr19:17585885..17585901,-#_9b3409e528ac533dfd8475c41e23287dp@chr19:17585885..17585901, -
3.28e-58FFCP PHASE1:Mm9::chr1:90155966..90155989,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:90155966..90155989, +
3.28e-58FFCP PHASE2:Mm9::chr15:75347689..75347703,+#_9b3409e528ac533dfd8475c41e23287dp@chr15:75347689..75347703, +
3.28e-58FFCP PHASE1:Mm9::chr13:21378871..21378901,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21378871..21378901, -
3.28e-58FFCP PHASE2:Mm9::chr2:164479326..164479336,+#_9b3409e528ac533dfd8475c41e23287dp@chr2:164479326..164479336, +
3.28e-58FFCP PHASE2:Mm9::chr9:100350777..100350782,+#_9b3409e528ac533dfd8475c41e23287dp@chr9:100350777..100350782, +
3.28e-58FFCP PHASE1:Mm9::chr8:23057222..23057234,+#_9b3409e528ac533dfd8475c41e23287dp1@Defb13
3.28e-58FFCP PHASE1:Mm9::chr7:31507623..31507631,+#_9b3409e528ac533dfd8475c41e23287dp4@Atp4a
3.28e-58FFCP PHASE1:Mm9::chr1:155698166..155698174,-#_9b3409e528ac533dfd8475c41e23287dp@chr1:155698166..155698174, -
3.28e-58FFCP PHASE2:Mm9::chr3:103650730..103650741,+#_9b3409e528ac533dfd8475c41e23287dp@chr3:103650730..103650741, +
3.28e-58FFCP PHASE1:Mm9::chr13:21380670..21380678,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21380670..21380678, -
3.28e-58FFCP PHASE2:Mm9::chr5:66513886..66513897,-#_9b3409e528ac533dfd8475c41e23287dp@chr5:66513886..66513897, -
3.28e-58FFCP PHASE1:Mm9::chr13:46041606..46041640,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:46041606..46041640, -
3.28e-58FFCP PHASE2:Mm9::chr17:35252614..35252635,-#_9b3409e528ac533dfd8475c41e23287dp3@Ly6g5b
3.28e-58FFCP PHASE2:Mm9::chr7:105313229..105313234,-#_9b3409e528ac533dfd8475c41e23287dp17@Capn5
3.28e-58FFCP PHASE2:Mm9::chr8:113585667..113585673,-#_9b3409e528ac533dfd8475c41e23287dp@chr8:113585667..113585673, -
3.28e-58FFCP PHASE1:Mm9::chr2:152302768..152302774,+#_9b3409e528ac533dfd8475c41e23287dp4@Defb20
3.28e-58FFCP PHASE2:Mm9::chr9:35651764..35651782,-#_9b3409e528ac533dfd8475c41e23287dp2@9230110F15Rik
3.28e-58FFCP PHASE1:Mm9::chr1:89597725..89597743,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:89597725..89597743, +
3.28e-58FFCP PHASE1:Mm9::chr14:51627616..51627623,+#_9b3409e528ac533dfd8475c41e23287dp2@Rnase10
3.28e-58FFCP PHASE2:Mm9::chr2:25349402..25349409,-#_9b3409e528ac533dfd8475c41e23287dp3@Lcn12
3.28e-58FFCP PHASE1:Mm9::chr7:151927980..151927988,+#_9b3409e528ac533dfd8475c41e23287dp@chr7:151927980..151927988, +
3.28e-58FFCP PHASE1:Mm9::chr13:21379261..21379264,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379261..21379264, -
3.28e-58FFCP PHASE2:Mm9::chr1:90155951..90155962,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:90155951..90155962, +
3.28e-58FFCP PHASE1:Mm9::chr18:46301295..46301302,-#_9b3409e528ac533dfd8475c41e23287dp@chr18:46301295..46301302, -
3.28e-58FFCP PHASE2:Mm9::chr1:18213651..18213663,-#_9b3409e528ac533dfd8475c41e23287dp1@Defb44-ps
3.28e-58FFCP PHASE2:Mm9::chr14:51627586..51627595,+#_9b3409e528ac533dfd8475c41e23287dp4@Rnase10
3.28e-58FFCP PHASE1:Mm9::chrX:50280126..50280140,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:50280126..50280140, +
3.28e-58FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379845..31379855, +
3.28e-58FFCP PHASE1:Mm9::chr2:164499572..164499580,-#_9b3409e528ac533dfd8475c41e23287dp2@Wfdc11
3.28e-58FFCP PHASE2:Mm9::chr13:21379107..21379136,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379107..21379136, +
3.28e-58FFCP PHASE1:Mm9::chr10:28772042..28772046,-#_9b3409e528ac533dfd8475c41e23287dp@chr10:28772042..28772046, -
3.28e-58FFCP PHASE1:Mm9::chr5:66513886..66513897,-#_9b3409e528ac533dfd8475c41e23287dp@chr5:66513886..66513897, -
3.28e-58FFCP PHASE2:Mm9::chr11:59845349..59845371,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:59845349..59845371, -
3.28e-58FFCP PHASE1:Mm9::chr2:152302836..152302841,+#_9b3409e528ac533dfd8475c41e23287dp6@Defb20
3.28e-58FFCP PHASE1:Mm9::chr8:19141429..19141440,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:19141429..19141440, +
3.28e-58FFCP PHASE1:Mm9::chr2:25349488..25349492,-#_9b3409e528ac533dfd8475c41e23287dp6@Lcn12
3.28e-58FFCP PHASE2:Mm9::chr12:110131571..110131579,-#_9b3409e528ac533dfd8475c41e23287dp15@Wars
3.28e-58FFCP PHASE2:Mm9::chr10:28772042..28772046,-#_9b3409e528ac533dfd8475c41e23287dp@chr10:28772042..28772046, -
3.28e-58FFCP PHASE1:Mm9::chr6:147624258..147624285,-#_9b3409e528ac533dfd8475c41e23287dp@chr6:147624258..147624285, -
3.28e-58FFCP PHASE2:Mm9::chr8:19141371..19141383,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:19141371..19141383, +
3.28e-58FFCP PHASE2:Mm9::chr13:24270118..24270122,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:24270118..24270122, -
3.28e-58FFCP PHASE1:Mm9::chr14:52542661..52542668,-#_9b3409e528ac533dfd8475c41e23287dp3@Rnase13
3.28e-58FFCP PHASE1:Mm9::chr8:25706249..25706254,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:25706249..25706254, +
3.28e-58FFCP PHASE1:Mm9::chr7:6204391..6204398,+#_9b3409e528ac533dfd8475c41e23287dp2@Gm6792
3.28e-58FFCP PHASE2:Mm9::chr1:89597818..89597827,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:89597818..89597827, +
3.28e-58FFCP PHASE2:Mm9::chr5:110773731..110773753,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:110773731..110773753, +
3.28e-58FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_9b3409e528ac533dfd8475c41e23287dp4@uc007mmw.1
3.28e-58FFCP PHASE1:Mm9::chr12:103896072..103896081,-#_9b3409e528ac533dfd8475c41e23287dp@chr12:103896072..103896081, -
3.28e-58FFCP PHASE2:Mm9::chr4:150092027..150092070,-#_9b3409e528ac533dfd8475c41e23287dp@chr4:150092027..150092070, -
3.28e-58FFCP PHASE2:Mm9::chr2:152302836..152302841,+#_9b3409e528ac533dfd8475c41e23287dp6@Defb20
3.28e-58FFCP PHASE2:Mm9::chrX:164787162..164787188,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:164787162..164787188, -
3.28e-58FFCP PHASE1:Mm9::chr3:103650758..103650778,+#_9b3409e528ac533dfd8475c41e23287dp@chr3:103650758..103650778, +
3.28e-58FFCP PHASE1:Mm9::chr19:17591760..17591765,+#_9b3409e528ac533dfd8475c41e23287dp@chr19:17591760..17591765, +
3.28e-58FFCP PHASE2:Mm9::chr9:26610184..26610191,-#_9b3409e528ac533dfd8475c41e23287dp4@Glb1l2
3.28e-58FFCP PHASE2:Mm9::chr7:148445639..148445665,+#_9b3409e528ac533dfd8475c41e23287dp@chr7:148445639..148445665, +
3.28e-58FFCP PHASE2:Mm9::chr14:51680551..51680555,-#_9b3409e528ac533dfd8475c41e23287dp@chr14:51680551..51680555, -
3.28e-58FFCP PHASE1:Mm9::chr7:148445639..148445665,+#_9b3409e528ac533dfd8475c41e23287dp@chr7:148445639..148445665, +
3.28e-58FFCP PHASE2:Mm9::chrX:12571771..12571780,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:12571771..12571780, -
3.28e-58FFCP PHASE2:Mm9::chr15:54678915..54678922,-#_9b3409e528ac533dfd8475c41e23287dp@chr15:54678915..54678922, -
3.28e-58FFCP PHASE2:Mm9::chr5:31379454..31379466,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379454..31379466, +
3.28e-58FFCP PHASE1:Mm9::chrX:12571771..12571780,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:12571771..12571780, -
3.28e-58FFCP PHASE1:Mm9::chr16:25752228..25752237,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:25752228..25752237, +

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