Personal tools

UBERON:0000160: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 18: Line 18:
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0001555;;UBERON:0005409
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:25, 27 June 2012

Name:intestine
Definition:"Segment of the alimentary canal extending from the stomach to the anus and, in humans and other mammals, consists of two segments, the small intestine and the large intestine." [GOC:GO, Wikipedia:Intestine]
Xrefs:
links:

AAO:0000246
ANISEED:1235303
BTO:0000648
EFO:0000834
EV:0100071
FMA:7199
GAID:295
galen:Intestine
MA:0000328
MA:0001524
MESH:A.03.492.411
MIAA:0000043
ncithesaurus:Intestine
SCTID:256876008
TAO:0001338
VHOG:0000056
WBbt:0005772
XAO:0000129

ZFA:0001338
Synonyms: "bowel" EXACT []
Comments:MA also has a class MA:0001524 bowel, not clear how this is different
Alt_id: UBERON:FBbt_00005785-FMA_15703-FMA_7199-MA_0000328-MA_0000330-MIAA_0000042-MIAA_0000043-WBbt_0005772-WBbt_0005774-XAO_0000129-XAO_0000244-ZFA_0000330-ZFA_0001338
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004921(subdivision of digestive tract)
part_of:UBERON:0001555(digestive tract),UBERON:0005409(gastrointestinal system)



Children

derives from:FF:0011265 (mouse intestine- neonate N00 sample),FF:0011285 (mouse intestine- adult sample),FF:0011330 (mouse intestine- embryo E13 sample),FF:0011362 (mouse intestine- embryo E16 sample),FF:0011370 (mouse intestine- embryo E17 sample),FF:0011404 (mouse intestine- neonate N06 sample),FF:0011411 (mouse intestine- neonate N07 sample),FF:0011418 (mouse intestine- neonate N10 sample),FF:0011431 (mouse intestine- neonate N20 sample),FF:0011441 (mouse intestine- embryo E15 sample),FF:0011480 (mouse intestine- neonate N25 sample),FF:0011481 (mouse intestine- neonate N30 sample),FF:0011504 (mouse intestine- neonate N01 sample),FF:0011511 (mouse intestine- embryo E18 sample),FF:0100003 (intestinal cell line sample)
part of:UBERON:0000059 (large intestine),UBERON:0001242 (intestinal mucosa),UBERON:0001262 (wall of intestine),UBERON:0001277 (intestinal epithelium),UBERON:0002108 (small intestine),CL:0002504 (enteric smooth muscle cell),CL:0002563 (intestinal epithelial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000160 (intestine), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.48e-88FFCP PHASE2:Hg19::chr16:1275258..1275289,-#_ed23b68898094d50ad0295e1bb4160e6p1@TPSG1
3.48e-88FFCP PHASE1:Hg19::chr16:1275258..1275289,-#_ed23b68898094d50ad0295e1bb4160e6p1@TPSG1
7.07e-88FFCP PHASE2:Hg19::chr1:167059763..167059776,-#_88d7b9b7852ace5d1093fac910282463p4@GPA33
7.07e-88FFCP PHASE1:Hg19::chr1:167059763..167059776,-#_88d7b9b7852ace5d1093fac910282463p4@GPA33
1.38e-83FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_7284ab5835be9adbae3d7261a432754ep3@CDX2
1.38e-83FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_7284ab5835be9adbae3d7261a432754ep3@CDX2
1.7e-83FFCP PHASE1:Hg19::chrX:65382664..65382675,+#_f856dcd645d727d201618584c240717dp8@HEPH
1.7e-83FFCP PHASE2:Hg19::chrX:65382664..65382675,+#_f856dcd645d727d201618584c240717dp8@HEPH
1.39e-81FFCP PHASE1:Hg19::chr10:101292731..101292741,+#_4708d7c22bf21f3484cd8cc93e97c42fp2@NKX2-3
1.39e-81FFCP PHASE2:Hg19::chr10:101292731..101292741,+#_4708d7c22bf21f3484cd8cc93e97c42fp2@NKX2-3
4.08e-80FFCP PHASE1:Hg19::chr4:120243266..120243277,-#_f95d034e942aa4396c4604038e205dcep2@FABP2
4.08e-80FFCP PHASE2:Hg19::chr4:120243266..120243277,-#_f95d034e942aa4396c4604038e205dcep2@FABP2
4.9e-80FFCP PHASE2:Hg19::chr14:47203595..47203635,-#_079c1e37a8b152c9d7c160535bdd83fep@chr14:47203595..47203635, -
4.9e-80FFCP PHASE1:Hg19::chr14:47203595..47203635,-#_079c1e37a8b152c9d7c160535bdd83fep@chr14:47203595..47203635, -
4.9e-80FFCP PHASE2:Hg19::chr2:128293323..128293332,+#_079c1e37a8b152c9d7c160535bdd83fep4@MYO7B
4.9e-80FFCP PHASE1:Hg19::chr2:128293323..128293332,+#_079c1e37a8b152c9d7c160535bdd83fep4@MYO7B
1.23e-77FFCP PHASE1:Hg19::chrX:65382622..65382653,+#_89b7c266457fe788a59c52a0dfd573b4p3@HEPH
1.23e-77FFCP PHASE2:Hg19::chrX:65382622..65382653,+#_89b7c266457fe788a59c52a0dfd573b4p3@HEPH
1.84e-77FFCP PHASE1:Hg19::chr5:180326145..180326166,+#_c23dc9d2bfb318429d1cdb1ce17c8210p1@BTNL8
1.84e-77FFCP PHASE2:Hg19::chr5:180326145..180326166,+#_c23dc9d2bfb318429d1cdb1ce17c8210p1@BTNL8
2.7e-77FFCP PHASE2:Hg19::chr5:180415839..180415851,+#_c959ae783476e82b91a798e8d4ec2245p2@BTNL3
2.7e-77FFCP PHASE1:Hg19::chr5:180415839..180415851,+#_c959ae783476e82b91a798e8d4ec2245p2@BTNL3
4.81e-77FFCP PHASE2:Hg19::chr11:69294647..69294668,-#_06f7a2421c79b20a251164ad3f6d2bf7p1@ENST00000542064
4.81e-77FFCP PHASE1:Hg19::chr11:69294647..69294668,-#_06f7a2421c79b20a251164ad3f6d2bf7p1@ENST00000542064
2.02e-76FFCP PHASE1:Hg19::chr10:101292921..101292931,+#_ac8dee1d4edbab6e5e68d76a725c7dddp4@NKX2-3
2.02e-76FFCP PHASE2:Hg19::chr1:45253840..45253843,-#_ac8dee1d4edbab6e5e68d76a725c7dddp1@BEST4
2.02e-76FFCP PHASE1:Hg19::chr1:45253840..45253843,-#_ac8dee1d4edbab6e5e68d76a725c7dddp1@BEST4
2.02e-76FFCP PHASE2:Hg19::chr10:101292921..101292931,+#_ac8dee1d4edbab6e5e68d76a725c7dddp4@NKX2-3
2.28e-73FFCP PHASE1:Hg19::chr17:48844868..48844891,-#_5eeee8e1b0e3617479ccee715f99429bp1@LINC00483
2.28e-73FFCP PHASE2:Hg19::chr17:48844868..48844891,-#_5eeee8e1b0e3617479ccee715f99429bp1@LINC00483
1.6e-72FFCP PHASE1:Hg19::chr7:107443661..107443675,-#_80bcd3c9414c69be9c24a5cc5ef63d5fp1@SLC26A3
1.6e-72FFCP PHASE2:Hg19::chr7:107443661..107443675,-#_80bcd3c9414c69be9c24a5cc5ef63d5fp1@SLC26A3
2.17e-72FFCP PHASE2:Hg19::chr5:180326100..180326136,+#_ca3637fa11e25914781f7b93cd6437d5p2@BTNL8
2.17e-72FFCP PHASE1:Hg19::chr5:180326100..180326136,+#_ca3637fa11e25914781f7b93cd6437d5p2@BTNL8
2.33e-72FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_b13549a9d971edeebb6f63d86636cf23p8@CDX2
2.33e-72FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_b13549a9d971edeebb6f63d86636cf23p8@CDX2
1.05e-69FFCP PHASE1:Hg19::chr14:103389369..103389380,+#_27c4f7551f5f79be9fec1bbe03d041bcp3@AMN
1.05e-69FFCP PHASE2:Hg19::chr14:103389369..103389380,+#_27c4f7551f5f79be9fec1bbe03d041bcp3@AMN
1.15e-69FFCP PHASE1:Hg19::chr1:167059674..167059697,-#_ba097fa83511e4ec1a0299bc57713a91p3@GPA33
1.15e-69FFCP PHASE2:Hg19::chr1:167059674..167059697,-#_ba097fa83511e4ec1a0299bc57713a91p3@GPA33
1.87e-69FFCP PHASE2:Hg19::chr17:48844903..48844922,-#_4826c4a5a2174c2b4cbba04fc4f920b0p2@LINC00483
1.87e-69FFCP PHASE1:Hg19::chr17:48844903..48844922,-#_4826c4a5a2174c2b4cbba04fc4f920b0p2@LINC00483
3.96e-69FFCP PHASE2:Mm9::chr8:77396650..77396662,+#_955879a7b34ed27ba93f91a8ee32b7fap4@Isx
3.96e-69FFCP PHASE1:Mm9::chr8:77396650..77396662,+#_955879a7b34ed27ba93f91a8ee32b7fap4@Isx
1.08e-68FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_c5e157a3441db6eb3fa701a0e6e27f4ap5@CDX2
1.08e-68FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_c5e157a3441db6eb3fa701a0e6e27f4ap5@CDX2
5.52e-68FFCP PHASE1:Hg19::chr19:50691437..50691453,+#_afa29972f85ce579cd94816f56633e3ep2@MYH14
5.52e-68FFCP PHASE2:Hg19::chr19:50691437..50691453,+#_afa29972f85ce579cd94816f56633e3ep2@MYH14
5.62e-67FFCP PHASE1:Hg19::chr13:28552822..28552831,-#_09cdea1a08e2ac04cda6dbb6d71f7c44p@chr13:28552822..28552831, -
5.62e-67FFCP PHASE2:Hg19::chr13:28552822..28552831,-#_09cdea1a08e2ac04cda6dbb6d71f7c44p@chr13:28552822..28552831, -
6.02e-67FFCP PHASE2:Mm9::chr5:148118809..148118832,-#_1d0f0a4c67b5d62cf45c554595fbbacap5@Cdx2
6.02e-67FFCP PHASE1:Mm9::chr5:148118809..148118832,-#_1d0f0a4c67b5d62cf45c554595fbbacap5@Cdx2
6.2e-67FFCP PHASE2:Hg19::chr15:40648275..40648301,+#_5a02a09fc14f59436faedd6c644bdfbbp@chr15:40648275..40648301, +
6.2e-67FFCP PHASE2:Hg19::chr4:57138437..57138479,+#_5a02a09fc14f59436faedd6c644bdfbbp1@KIAA1211
6.2e-67FFCP PHASE1:Hg19::chr11:114430588..114430608,-#_5a02a09fc14f59436faedd6c644bdfbbp1@FAM55A
6.2e-67FFCP PHASE1:Hg19::chr15:40648275..40648301,+#_5a02a09fc14f59436faedd6c644bdfbbp@chr15:40648275..40648301, +
6.2e-67FFCP PHASE1:Hg19::chr4:57138437..57138479,+#_5a02a09fc14f59436faedd6c644bdfbbp1@KIAA1211
6.2e-67FFCP PHASE2:Hg19::chr11:114430588..114430608,-#_5a02a09fc14f59436faedd6c644bdfbbp1@FAM55A
6.84e-67FFCP PHASE1:Hg19::chr1:167059705..167059714,-#_225e97828c4fefae28ffdd0f794748d2p6@GPA33
6.84e-67FFCP PHASE1:Hg19::chr13:28552867..28552874,-#_225e97828c4fefae28ffdd0f794748d2p@chr13:28552867..28552874, -
6.84e-67FFCP PHASE2:Hg19::chr13:28552867..28552874,-#_225e97828c4fefae28ffdd0f794748d2p@chr13:28552867..28552874, -
6.84e-67FFCP PHASE2:Hg19::chr1:167059705..167059714,-#_225e97828c4fefae28ffdd0f794748d2p6@GPA33
1.01e-66FFCP PHASE1:Hg19::chr3:124646645..124646669,-#_48c8aee46a817a315e8457019fcc3be4p3@MUC13
1.01e-66FFCP PHASE2:Hg19::chr3:124646645..124646669,-#_48c8aee46a817a315e8457019fcc3be4p3@MUC13
9.77e-66FFCP PHASE1:Hg19::chr21:44151895..44151908,+#_d7cf6ca708aedd21b382276558198c8ap6@PDE9A
9.77e-66FFCP PHASE1:Hg19::chr11:46958029..46958041,+#_d7cf6ca708aedd21b382276558198c8ap4@C11orf49
9.77e-66FFCP PHASE2:Hg19::chr11:1092389..1092394,+#_d7cf6ca708aedd21b382276558198c8ap14@MUC2
9.77e-66FFCP PHASE1:Hg19::chr11:1092389..1092394,+#_d7cf6ca708aedd21b382276558198c8ap14@MUC2
9.77e-66FFCP PHASE2:Hg19::chr1:155912696..155912738,-#_d7cf6ca708aedd21b382276558198c8ap@chr1:155912696..155912738, -
9.77e-66FFCP PHASE1:Hg19::chr15:45689453..45689466,-#_d7cf6ca708aedd21b382276558198c8ap11@GATM
9.77e-66FFCP PHASE1:Hg19::chr1:155912696..155912738,-#_d7cf6ca708aedd21b382276558198c8ap@chr1:155912696..155912738, -
9.77e-66FFCP PHASE2:Hg19::chr21:44151895..44151908,+#_d7cf6ca708aedd21b382276558198c8ap6@PDE9A
9.77e-66FFCP PHASE2:Hg19::chr15:45689453..45689466,-#_d7cf6ca708aedd21b382276558198c8ap11@GATM
9.77e-66FFCP PHASE2:Hg19::chr11:46958029..46958041,+#_d7cf6ca708aedd21b382276558198c8ap4@C11orf49
4.15e-65FFCP PHASE1:Mm9::chr7:114809099..114809120,+#_c6314fd8ca83f6c2368af742db163c6ap@chr7:114809099..114809120, +
4.15e-65FFCP PHASE2:Mm9::chr7:114809099..114809120,+#_c6314fd8ca83f6c2368af742db163c6ap@chr7:114809099..114809120, +
1.47e-63FFCP PHASE2:Hg19::chr13:28552795..28552806,-#_64ad17a554db9ca0a7481fb122631ba2p@chr13:28552795..28552806, -
1.47e-63FFCP PHASE1:Hg19::chr13:28552795..28552806,-#_64ad17a554db9ca0a7481fb122631ba2p@chr13:28552795..28552806, -
1.87e-63FFCP PHASE2:Hg19::chr1:167059607..167059633,-#_2fe019901cbe7a205bfdec33a519b012p1@GPA33
1.87e-63FFCP PHASE2:Hg19::chr16:23766308..23766323,+#_2fe019901cbe7a205bfdec33a519b012p2@CHP2
1.87e-63FFCP PHASE1:Hg19::chr16:23766308..23766323,+#_2fe019901cbe7a205bfdec33a519b012p2@CHP2
1.87e-63FFCP PHASE1:Hg19::chr1:167059607..167059633,-#_2fe019901cbe7a205bfdec33a519b012p1@GPA33
2.21e-63FFCP PHASE1:Mm9::chr7:35814319..35814327,-#_b877734bb74b41e2638f415963725181p@chr7:35814319..35814327, -
2.21e-63FFCP PHASE2:Mm9::chr7:35814319..35814327,-#_b877734bb74b41e2638f415963725181p@chr7:35814319..35814327, -
4.58e-63FFCP PHASE2:Hg19::chr8:48911486..48911495,-#_799d60ceaf61fc8be6ec33ad8bf6ccf8p@chr8:48911486..48911495, -
4.58e-63FFCP PHASE1:Hg19::chr8:48911486..48911495,-#_799d60ceaf61fc8be6ec33ad8bf6ccf8p@chr8:48911486..48911495, -
5.63e-63FFCP PHASE2:Hg19::chrX:65382591..65382602,+#_3070d0fe362e76ce66d0d16851595bd8p9@HEPH
5.63e-63FFCP PHASE1:Hg19::chrX:65382591..65382602,+#_3070d0fe362e76ce66d0d16851595bd8p9@HEPH
8.34e-63FFCP PHASE2:Mm9::chr7:148106817..148106828,+#_38b9259134d4876a83738447c2e59628p3@Nlrp6
8.34e-63FFCP PHASE1:Mm9::chr7:148106817..148106828,+#_38b9259134d4876a83738447c2e59628p3@Nlrp6
9.83e-63FFCP PHASE1:Mm9::chr9:56091842..56091854,-#_1bc286effe55de877b3a163b73c21521p@chr9:56091842..56091854, -
9.83e-63FFCP PHASE2:Mm9::chr9:56091842..56091854,-#_1bc286effe55de877b3a163b73c21521p@chr9:56091842..56091854, -
1.44e-62FFCP PHASE2:Hg19::chr12:14849470..14849540,-#_bff5b053adb742e07b68d4317afa86c6p1@GUCY2C
1.44e-62FFCP PHASE1:Hg19::chr12:14849470..14849540,-#_bff5b053adb742e07b68d4317afa86c6p1@GUCY2C
5.34e-62FFCP PHASE1:Mm9::chr2:14096119..14096136,+#_3d1039088aca7fb3bea69861d2998c29p3@Fam23a
5.34e-62FFCP PHASE2:Mm9::chr2:14096119..14096136,+#_3d1039088aca7fb3bea69861d2998c29p3@Fam23a
6.28e-62FFCP PHASE1:Mm9::chr6:48845213..48845232,+#_4394b4944af4e1140f15c7791f3852f9p4@Abp1
6.28e-62FFCP PHASE2:Mm9::chr6:48845213..48845232,+#_4394b4944af4e1140f15c7791f3852f9p4@Abp1
7.0e-62FFCP PHASE2:Hg19::chr13:28543316..28543329,-#_85f74d0bcc99ae791a4d47d88de62b24p4@CDX2
7.0e-62FFCP PHASE1:Hg19::chr13:28543316..28543329,-#_85f74d0bcc99ae791a4d47d88de62b24p4@CDX2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the alimentary canal bounded anteriorly by the pyloric sphincter and posteriorly by the cloacal sphincter.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000160&oldid=1837288"