UBERON:0010359: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0010359
|name=pharyngeal arch mesenchyme from neural crest
|namespace=
|def=
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|is_a=UBERON:0003104;;UBERON:0005291;;UBERON:0010313
|synonym=
...") |
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|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0002342 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0010046 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:45, 27 June 2012
| Name: | pharyngeal arch mesenchyme from neural crest |
|---|---|
| Comments: | Partially implements UBERONREF:0000002 NC meeting scheme |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003104(mesenchyme),UBERON:0005291(embryonic tissue),UBERON:0010313(neural crest-derived structure) |
|---|---|
| develops_from: | UBERON:0002342(neural crest) |
| part_of: | UBERON:0010046(entire pharyngeal arch associated mesenchyme) |
Children
| is a: | UBERON:0010259 (1st arch mesenchyme from neural crest) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010359 (pharyngeal arch mesenchyme from neural crest), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_5229b2548a1ef10bfa83466212b3d17e | p14@C17orf67 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_5229b2548a1ef10bfa83466212b3d17e | p14@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_64c5d793ba2a39c36fd0dab1164eb368 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_64c5d793ba2a39c36fd0dab1164eb368 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_64c5d793ba2a39c36fd0dab1164eb368 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_64c5d793ba2a39c36fd0dab1164eb368 | p12@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_64c5d793ba2a39c36fd0dab1164eb368 | p@chr8:57353655..57353662, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_64c5d793ba2a39c36fd0dab1164eb368 | p13@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_64c5d793ba2a39c36fd0dab1164eb368 | p11@C17orf67 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_64c5d793ba2a39c36fd0dab1164eb368 | p13@C17orf67 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_c1763e31642d00d431883dd097348763 | p14@MAB21L2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_c1763e31642d00d431883dd097348763 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_c1763e31642d00d431883dd097348763 | p@chr5:75912402..75912418, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_c1763e31642d00d431883dd097348763 | p14@MAB21L2 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_2f7e313c01840b2f4b8107264d61ba0d | p@chr4:151505582..151505614, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_2f7e313c01840b2f4b8107264d61ba0d | p@chr4:151505582..151505614, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_cac2d57d7484e62e06767b93c101b3fd | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_cac2d57d7484e62e06767b93c101b3fd | p9@C17orf67 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_cac2d57d7484e62e06767b93c101b3fd | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_cac2d57d7484e62e06767b93c101b3fd | p17@RSRC1 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_cac2d57d7484e62e06767b93c101b3fd | p@chr8:57354278..57354286, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_cac2d57d7484e62e06767b93c101b3fd | p9@C17orf67 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_9a00300ea9e2e0c455bbd8f82aff9b56 | p@chr8:57802672..57802682, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_9a00300ea9e2e0c455bbd8f82aff9b56 | p@chr8:57802672..57802682, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_cbf17f5bdf5115eb05ac38d87a024efd | p7@ALX1 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_cbf17f5bdf5115eb05ac38d87a024efd | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_cbf17f5bdf5115eb05ac38d87a024efd | p1@AK123925 |
| 3.99e-50 | FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_cbf17f5bdf5115eb05ac38d87a024efd | p7@ALX1 |
| 3.99e-50 | FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_cbf17f5bdf5115eb05ac38d87a024efd | p@chr5:75913767..75913778, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_cbf17f5bdf5115eb05ac38d87a024efd | p1@AK123925 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_212b0282c64f9022aa27bef333539601 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_212b0282c64f9022aa27bef333539601 | p@chr2:33519090..33519092, + |
| 6.58e-50 | FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_212b0282c64f9022aa27bef333539601 | p23@FLT1 |
| 6.58e-50 | FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_212b0282c64f9022aa27bef333539601 | p@chr2:33519090..33519092, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_3a0de850a933738d84f153e54fb26d67 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_3a0de850a933738d84f153e54fb26d67 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_3a0de850a933738d84f153e54fb26d67 | p@chr8:57354143..57354152, + |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_3a0de850a933738d84f153e54fb26d67 | p@chr8:57353779..57353790, - |
| 6.62e-41 | FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_3a0de850a933738d84f153e54fb26d67 | p@chr8:57353666..57353675, - |
| 6.62e-41 | FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_3a0de850a933738d84f153e54fb26d67 | p@chr8:57353779..57353790, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_aad05e3dc4ae5af5d30c85167cd819b9 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_aad05e3dc4ae5af5d30c85167cd819b9 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_aad05e3dc4ae5af5d30c85167cd819b9 | p12@FAM65C |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_aad05e3dc4ae5af5d30c85167cd819b9 | p8@LHX8 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_aad05e3dc4ae5af5d30c85167cd819b9 | p2@TAS1R1 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_aad05e3dc4ae5af5d30c85167cd819b9 | p8@LHX8 |
| 2.21e-40 | FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_2457e99c137acb2994afc425eec10654 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_2457e99c137acb2994afc425eec10654 | p@chr5:75912831..75912842, - |
| 2.21e-40 | FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_2457e99c137acb2994afc425eec10654 | p@chr16:67687543..67687559, - |
| 2.21e-40 | FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_2457e99c137acb2994afc425eec10654 | p@chr5:75912831..75912842, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_36b21cf007f092be76db258a1212f06a | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_36b21cf007f092be76db258a1212f06a | p@chr9:125165007..125165016, + |
| 3.3e-40 | FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_36b21cf007f092be76db258a1212f06a | p@chr6:46190219..46190230, - |
| 3.3e-40 | FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_36b21cf007f092be76db258a1212f06a | p@chr9:125165007..125165016, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_a41273d7148f418f746aa603d1e7952c | p5@PENK |
| 1.84e-34 | FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_a41273d7148f418f746aa603d1e7952c | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_a41273d7148f418f746aa603d1e7952c | p@chr10:15760985..15760992, - |
| 1.84e-34 | FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_a41273d7148f418f746aa603d1e7952c | p4@CPZ |
| 1.84e-34 | FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_a41273d7148f418f746aa603d1e7952c | p5@PENK |
| 1.84e-34 | FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_a41273d7148f418f746aa603d1e7952c | p@chr10:15760985..15760992, - |
| 2.58e-34 | FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_df9a5cc24d7e29c51ef8b49f7a896df3 | p9@SIX1 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_df9a5cc24d7e29c51ef8b49f7a896df3 | p9@SIX1 |
| 5.05e-34 | FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_6a073dfbcf9d594c3c4272dc01a2f62f | p@chr6:134327986..134327991, - |
| 5.05e-34 | FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_6a073dfbcf9d594c3c4272dc01a2f62f | p@chr6:134327986..134327991, - |
| 7.06e-34 | FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_4d99bcfe1a2d9a2052111a6c61fb0b80 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_4d99bcfe1a2d9a2052111a6c61fb0b80 | p@chr8:57353676..57353688, - |
| 7.06e-34 | FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_4d99bcfe1a2d9a2052111a6c61fb0b80 | p@chr13:58291223..58291226, + |
| 7.06e-34 | FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_4d99bcfe1a2d9a2052111a6c61fb0b80 | p@chr8:57353676..57353688, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_634c2e344b012e7defb13ed759e54a14 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_634c2e344b012e7defb13ed759e54a14 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_634c2e344b012e7defb13ed759e54a14 | p4@PLAC1 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_634c2e344b012e7defb13ed759e54a14 | p12@FBN2 |
| 9.85e-34 | FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_634c2e344b012e7defb13ed759e54a14 | p@chr5:19721484..19721507, - |
| 9.85e-34 | FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_634c2e344b012e7defb13ed759e54a14 | p4@PLAC1 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_7b5a21cb970af421c857d98607a57dd9 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_7b5a21cb970af421c857d98607a57dd9 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_7b5a21cb970af421c857d98607a57dd9 | p@chr8:57354360..57354367, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_7b5a21cb970af421c857d98607a57dd9 | p@chr8:57353804..57353821, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_7b5a21cb970af421c857d98607a57dd9 | p@chr8:57353982..57353991, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_7b5a21cb970af421c857d98607a57dd9 | p@chr8:57354360..57354367, + |
| 9.99e-30 | FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_d4e3fab8a5b564837c096da968d7d5cb | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_d4e3fab8a5b564837c096da968d7d5cb | p7@SHOX2 |
| 9.99e-30 | FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_d4e3fab8a5b564837c096da968d7d5cb | p10@ITGA8 |
| 9.99e-30 | FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_d4e3fab8a5b564837c096da968d7d5cb | p7@SHOX2 |
| 1.33e-29 | FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_073b199083361d3b6481421ec51ec226 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_073b199083361d3b6481421ec51ec226 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_073b199083361d3b6481421ec51ec226 | p@chr22:28193943..28193956, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_073b199083361d3b6481421ec51ec226 | p@chrX:132670143..132670152, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_073b199083361d3b6481421ec51ec226 | p@chr17:79071218..79071221, - |
| 1.33e-29 | FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_073b199083361d3b6481421ec51ec226 | p@chr22:28193943..28193956, - |
| 1.78e-29 | FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_943cadccb61e314a691abe84567c3793 | p@chr1:21904551..21904569, - |
| 1.78e-29 | FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_943cadccb61e314a691abe84567c3793 | p@chr1:21904551..21904569, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_55521dbd832614524899be834613990f | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_55521dbd832614524899be834613990f | p18@MEF2D |
| 3.16e-29 | FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_55521dbd832614524899be834613990f | p@chr14:89044406..89044416, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_55521dbd832614524899be834613990f | p@chr8:57359975..57359992, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_55521dbd832614524899be834613990f | p18@MEF2D |
| 3.16e-29 | FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_55521dbd832614524899be834613990f | p@chr14:89044406..89044416, + |
| 4.2e-29 | FFCP PHASE2:Hg19::chr13:36046127..36046134,+#_d3d743ac5dcff89455207629a0380996 | p@chr13:36046127..36046134, + |
| 4.2e-29 | FFCP PHASE1:Hg19::chr15:52606315..52606320,-#_d3d743ac5dcff89455207629a0380996 | p@chr15:52606315..52606320, - |
