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MacroAPE 1083:STAT4 CD4-Stat4-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;666;565;763;411!2;91;911;221;1182!3;2;2;2;2399!4;2;2;115;2286!5;178;2213;2;12!6;53;1903;2;447!7;864;329;356;856!8;450;2;1910;43!9;10;2;2208;...")
 
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5682!10717-109I6;0.276085!10455-106G5;0.258173!10534-107G3;0.505707!10429-106D6;0.80875!10464-106H5;0.78321!10827-111C8;0.756695!10789-110H6;0.962447!10828-111C9;0.868998!10788-110H5;0.190038!10792-110H9;0.262197!10765-110E9;0.99698!10829-111D1;0.93044!10830-111D2;0.533769!10831-111D3;0.386175!10832-111D4;0.658452!10833-111D5;0.431049!10764-110E8;0.477283!10770-110F5;0.58996!10399-106A3;0.422631!10400-106A4;0.757163!10405-106A9;0.846749!10834-111D6;0.949242!10835-111D7;0.983841!10836-111D8;0.180811!10837-111D9;0.571132!10699-109G6;0.432912!10802-111A1;0.833569!10796-110I4;0.0849029!10010-101C1;0.392481!10810-111A9;0.39232!10421-106C7;0.0656669!10708-109H6;0.294788!12235-129G3;0.123963!12236-129G4;0.435057!12237-129G5;0.0205467!10167-103B5;0.414191!10151-102I7;0.408965!10428-106D5;0.396299!10795-110I3;0.91622!10805-111A4;3.10043e-05!10052-101G7;0.088663!10189-103D9;0.926487!10589-108D4;0.529008!10425-106D2;0.152348!10427-106D4;0.80973!10702-109G9;0.0104838!10432-106D9;0.331012!10496-107C1;0.747223!10718-109I7;0.166359!10011-101C2;0.954234!10053-101G8;0.871323!10686-109F2;0.348492!10084-102B3;0.370527!10012-101C3;0.0501681!10085-102B4;0.235344!10482-107A5;0.0368276!10419-106C5;0.0996468!10080-102A8;0.418972!10760-110E4;0.378991!10709-109H7;0.756465!10710-109H8;0.396823!10703-109H1;0.885001!10719-109I8;0.00081006!10642-109A3;0.0298454!10177-103C6;0.004379!10164-103B2;0.451472!10173-103C2;0.329135!10166-103B4;0.0961788!10083-102B2;0.125136!10188-103D8;0.0148742!10552-107I3;0.107904!10553-107I4;0.81601!10013-101C4;0.279181!10536-107G5;0.331389!10618-108G6;0.00188094!10423-106C9;0.482254!10785-110H2;0.560479!12238-129G6;0.673823!12239-129G7;0.40488!12240-129G8;0.518779!10416-106C2;0.0405967!10801-110I9;0.683763!10766-110F1;0.165584!10824-111C5;0.880242!10825-111C6;0.655153!10826-111C7;0.513149!10454-106G4;0.30734!10409-106B4;0.655845!10638-108I8;0.519332!10636-108I6;0.714344!10513-107D9;0.532506!10420-106C6;0.542045!10082-102B1;0.0136251!10014-101C5;0.00537992!10070-101I7;0.50587!10452-106G2;0.0684221!10453-106G3;5.99366e-05!10449-106F8;0.00886423!10042-101F6;0.00418455!10069-101I6;0.239589!10193-103E4;0.1949!10631-108I1;0.0181227!10438-106E6;0.869604!10488-107B2;0.653157!10196-103E7;0.878017!10071-101I8;0.0485628!10071-101I8;0.418608!10041-101F5;0.0421091!10451-106G1;0.263391!10450-106F9;0.244249!10604-108F1;0.243943!10605-108F2;0.874652!10606-108F3;0.581188!10603-108E9;0.848411!10497-107C2;0.719143!10448-106F7;0.924796!10643-109A4;0.939244!10426-106D3;0.721511!10431-106D8;0.808495!10197-103E8;0.980963!10443-106F2;0.090406!10815-111B5;0.67685!10816-111B6;0.547508!10817-111B7;0.704415!10015-101C6;0.645968!10410-106B5;0.55228!10054-101G9;0.0543654!10758-110E2;0.0948684!10711-109H9;0.923839!10040-101F4;0.697714!10470-106I2;0.0596089!10415-106C1;0.979729!10198-103E9;0.00618621!10614-108G2;0.79209!10612-108F9;0.89206!10549-107H9;0.564807!10615-108G3;0.0012175!10487-107B1;0.00546874!10433-106E1;0.324662!10688-109F4;0.998028!10444-106F3;0.633534!10444-106F3;0.558426!10485-107A8;0.71481!10413-106B8;0.252557!10175-103C4;0.432914!10161-103A8;0.435681!12131-128D7;0.99745!10624-108H3;0.903555!10712-109I1;0.522381!10205-103F7;0.367048!10206-103F8;0.862778!10207-103F9;0.222698!10050-101G5;0.00356404!10051-101G6;0.21216!10016-101C7;0.480109!10046-101G1;0.536223!10778-110G4;0.393129!10633-108I3;0.364324!10818-111B8;0.0828078!10819-111B9;0.839035!10820-111C1;0.855915!10484-107A7;0.878907!10808-111A7;0.289412!10169-103B7;0.701968!10153-102I9;0.455271!13425-144D5;0.351819!13433-144E4;0.0794083!13437-144E8;0.110349!11904-125F5;0.0692548!11905-125F6;0.0606386!10039-101F3;0.15187!10791-110H8;0.0678473!10017-101C8;0.392287!10045-101F9;0.605091!10509-107D5;0.781888!10839-111E2;0.418621!10692-109F8;0.432634!10079-102A7;0.803583!10078-102A6;0.803101!10721-110A1;0.589436!10569-108B2;0.774986!10570-108B3;0.0937607!10571-108B4;0.286629!10647-109A8;0.272105!10752-110D5;0.99116!10782-110G8;0.225389!10726-110A6;0.675981!10018-101C9;0.558526!10086-102B5;1.4746e-05!10182-103D2;0.0235304!10165-103B3;0.61502!10499-107C4;0.740711!10408-106B3;0.776302!10019-101D1;0.259481!10068-101I5;0.599917!10075-102A3;0.546696!10077-102A5;0.776396!10727-110A7;0.0109781!10775-110G1;0.100019!10412-106B7;0.0489327!12231-129F8;0.038169!12232-129F9;0.2496!12233-129G1;0.349992!12234-129G2;0.0633046!10414-106B9;0.594485!10170-103B8;0.130735!10183-103D3;0.398768!10150-102I6;0.303597!10174-103C3;0.61041!10155-103A2;0.863562!10038-101F2;0.688058!10838-111E1;0.239952!10759-110E3;0.0117712!10514-107E1;0.529441!10465-106H6;0.741479!10691-109F7;0.671314!10843-111E6;0.838213!10844-111E7;0.000938117!11747-123G1;0.000111479!11748-123G2;0.555489!11749-123G3;0.957994!11750-123G4;0.165896!11751-123G5;0.106388!11840-124H4;0.138653!11752-123G6;0.0492799!11753-123G7;0.32301!11754-123G8;0.114665!11755-123G9;0.56757!11756-123H1;0.965556!11833-124G6;0.352559!11760-123H5;0.731841!11836-124G9;0.468813!11758-123H3;0.595916!11835-124G8;0.423984!11762-123H7;0.0725519!11838-124H2;0.353977!11757-123H2;0.42158!11759-123H4;0.961006!11761-123H6;0.635093!11842-124H6;0.956959!11837-124H1;0.587905!10568-108B1;0.383156!13230-141I8;0.10541!13231-141I9;0.485753!10696-109G3;0.296607!10493-107B7;0.0687101!10494-107B8;0.313704!10850-111F4;0.244406!10851-111F5;0.474954!10852-111F6;0.394715!10853-111F7;0.41387!10854-111F8;0.264207!10855-111F9;0.0202245!10856-111G1;0.814976!10847-111F1;0.30632!10846-111E9;0.31562!10848-111F2;0.860264!10845-111E8;0.471733!10857-111G2;0.888864!10858-111G3;0.99032!10156-103A3;0.830119!11901-125F2;0.487708!11902-125F3;0.343639!11903-125F4;0.363237!10689-109F5;0.278089!10648-109A9;0.957655!10784-110H1;0.999767!10744-110C6;0.913519!10772-110F7;0.000506571!10474-106I6;0.695461!10600-108E6;0.0998672!10684-109E9;0.64987!12226-129F3;0.209107!12227-129F4;0.889924!10508-107D4;0.0590072!10539-107G8;0.0481868!10607-108F4;0.0973571!10555-107I6;0.28583!10774-110F9;0.0157504!10637-108I7;0.112673!10663-109C6;0.20701!10728-110A8;0.0707044!10729-110A9;0.633707!10430-106D7;0.430181!10730-110B1;0.455369!10813-111B3;0.202641!10812-111B2;0.492919!10037-101F1;0.765686!10172-103C1;0.0552572!10163-103B1;0.273358!10076-102A4;0.692568!10073-102A1;0.0181752!10036-101E9;0.0432662!10195-103E6;0.0397132!10277-104E7;0.0322936!10434-106E2;0.238663!10550-107I1;0.80767!10545-107H5;0.639498!10544-107H4;0.704464!10704-109H2;0.475172!10510-107D6;0.747689!10558-107I9;0.0878232!10020-101D2;0.0085185!10732-110B3;0.828117!10049-101G4;0.767116!10698-109G5;0.0766282!10437-106E5;0.347866!10417-106C3;0.403422!10035-101E8;0.655047!10171-103B9;0.0861525!10157-103A4;0.401763!10034-101E7;0.603972!10072-101I9;0.0647793!10199-103F1;0.0580227!10200-103F2;0.417876!10697-109G4;0.234185!10723-110A3;0.29965!10179-103C8;0.655344!10160-103A7;0.197521!10180-103C9;0.609343!10162-103A9;0.945868!10021-101D3;0.32865!10840-111E3;0.386302!10706-109H4;0.355484!10033-101E6;0.479299!10032-101E5;0.108567!10490-107B4;0.0506356!10439-106E7;0.714922!10022-101D4;0.390701!10176-103C5;0.92824!10469-106I1;0.257803!10067-101I4;0.427212!10411-106B6;0.00831499!10471-106I3;0.113214!10030-101E3;0.709105!10475-106I7;0.36637!10787-110H4;0.000224308!10477-106I9;0.145269!10695-109G2;0.0490413!11771-123I7;0.993412!11772-123I8;0.882509!11773-123I9;0.674468!10093-102C3;0.66125!10442-106F1;0.635214!10442-106F1;0.378057!10201-103F3;0.563461!10639-108I9;0.176621!11843-124H7;0.983452!11841-124H5;0.60171!10693-109F9;0.369434!10436-106E4;0.726614!10483-107A6;0.106985!10282-104F3;0.970926!10023-101D5;0.411804!10066-101I3;0.65796!10065-101I2;0.0498884!10800-110I8;0.115246!10610-108F7;0.0118872!10841-111E4;0.0202488!10541-107H1;0.000760753!10842-111E5;0.0898818!10562-108A4;3.25616e-06!10024-101D6;0.0168507!10064-101I1;0.786952!10609-108F6;0.425512!10048-101G3;0.102793!10781-110G7;0.976662!10181-103D1;0.101234!10159-103A6;0.877938!10056-101H2;0.565399!10737-110B8;0.00673965!10025-101D7;0.288821!10044-101F8;0.0166131!10424-106D1;0.0470448!10463-106H4;0.400488!10616-108G4;0.337578!10486-107A9;0.483017!10062-101H8;0.280824!10202-103F4;0.381333!10158-103A5;0.336748!10441-106E9;0.853873!10031-101E4;0.00707386!10063-101H9;0.0573378!10063-101H9;0.0446623!11763-123H8;0.487074!11765-123I1;0.36438!11768-123I4;0.0233036!10807-111A6;0.994846!10790-110H7;0.0732011!10798-110I6;0.141725!10786-110H3;0.143753!10591-108D6;0.0771877!10593-108D8;0.0455796!10590-108D5;0.102995!10026-101D8;0.00819839!10096-102C6;0.141644!10168-103B6;0.00107408!10154-103A1;0.436293!10209-103G2;0.482364!10061-101H7;0.126182!10027-101D9;0.0843116!10043-101F7;0.32449!10783-110G9;0.33493!10028-101E1;0.533899!10060-101H6;0.733704!10203-103F5;0.0249401!10059-101H5;0.34702!10047-101G2;0.103324!10029-101E2;0.111731!10058-101H4;0.0044762!10418-106C4;0.502066!10492-107B6;0.679033!10694-109G1;0.378244!10797-110I5;0.52788!10057-101H3;0.320909!10100-102D1;0.473252!10055-101H1;0.574072!10204-103F6;0.0656148!10191-103E2;0.46602!10563-108A5;0.692858
|name=STAT4_CD4-Stat4-ChIP-Seq/Homer
|name=STAT4_CD4-Stat4-ChIP-Seq/Homer
|tomtom_result=STAT1#MA0137.2;1;4.97216e-11;2.36675e-08;4.7273e-08;12;GTTTCCAGGAAA;GGTTTCCGGGAAATG;-!Stat3#MA0144.1;-2;2.37372e-08;1.12989e-05;7.17666e-06;10;GTTTCCAGGAAA;TTCCAGGAAG;+!Eip74EF#MA0026.1;-1;0.00366944;1.74665;0.697746;7;GTTTCCAGGAAA;CTTCCGG;-!FEV#MA0156.1;-5;0.00523855;2.49355;0.71151;7;GTTTCCAGGAAA;CAGGAAAT;+!ETS1#MA0098.1;-1;0.0071763;3.41592;0.7581;6;GTTTCCAGGAAA;CTTCCG;+!ELK1#MA0028.1;-1;0.013483;6.41789;0.998691;10;GTTTCCAGGAAA;CTTCCGGCTC;-!PUT3#MA0358.1;-3;0.0139285;6.62999;0.998691;8;GTTTCCAGGAAA;CCCGGGAA;+!GCR2#MA0305.1;0;0.0161;7.66358;0.998691;7;GTTTCCAGGAAA;GCTTCCT;+!SPI1#MA0080.1;-6;0.0199359;9.48949;0.998691;6;GTTTCCAGGAAA;CGGAAG;+!ASG1#MA0275.1;-2;0.0199359;9.48949;0.998691;6;GTTTCCAGGAAA;TTCCGG;-
}}
}}

Latest revision as of 12:34, 7 September 2012

Full Name: STAT4_CD4-Stat4-ChIP-Seq/Homer

Motif matrix
POACGT
1666565763411
2919112211182
32222399
4221152286
51782213212
65319032447
7864329356856
84502191043
91022208185
1023128922
112399222
12114824595260

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STAT1#MA0137.214.97216e-112.36675e-084.7273e-0812GTTTCCAGGAAAGGTTTCCGGGAAATG-
Stat3#MA0144.1-22.37372e-081.12989e-057.17666e-0610GTTTCCAGGAAATTCCAGGAAG+
Eip74EF#MA0026.1-10.003669441.746650.6977467GTTTCCAGGAAACTTCCGG-
FEV#MA0156.1-50.005238552.493550.711517GTTTCCAGGAAACAGGAAAT+
ETS1#MA0098.1-10.00717633.415920.75816GTTTCCAGGAAACTTCCG+
ELK1#MA0028.1-10.0134836.417890.99869110GTTTCCAGGAAACTTCCGGCTC-
PUT3#MA0358.1-30.01392856.629990.9986918GTTTCCAGGAAACCCGGGAA+
GCR2#MA0305.100.01617.663580.9986917GTTTCCAGGAAAGCTTCCT+
SPI1#MA0080.1-60.01993599.489490.9986916GTTTCCAGGAAACGGAAG+
ASG1#MA0275.1-20.01993599.489490.9986916GTTTCCAGGAAATTCCGG-
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