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MacroAPE 1083:CGGAAACGGAA,motif609: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;51.224;285.102;0.337;0.337!2;35.048;10.11;291.505;0.337!3;0.337;19.883;316.443;0.337!4;335.989;0.337;0.337;0.337!5;229.834;80.88;25.949;0.33...")
 
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5759!11369-118A1;0.142711!11441-118I1;0.359193!10007-101B4;0.447452!11520-119H8;0.00145278!11600-120H7;0.687924!11681-122H7;0.320535!11216-116B1;0.341069!12179-129A1;0.286945!12180-129A2;0.00760038!12181-129A3;0.0140018!12176-128I7;0.049532!12177-128I8;0.0142756!12182-129A4;0.0147526!12183-129A5;0.029117!12184-129A6;0.00551074!10809-111A8;0.0371553!10597-108E3;0.855046!10717-109I6;0.591527!10455-106G5;0.389935!10534-107G3;0.000266112!10429-106D6;0.00737727!10464-106H5;0.00269863!10827-111C8;0.00192059!10789-110H6;0.000222428!10828-111C9;0.00207064!10788-110H5;0.00101421!10792-110H9;0.00208789!10765-110E9;0.00194192!10829-111D1;4.9666e-05!10830-111D2;0.000286508!10831-111D3;0.0292002!10832-111D4;0.000445394!10833-111D5;0.000161611!10764-110E8;0.00013265!10770-110F5;0.000833214!10399-106A3;0.000720148!10400-106A4;0.000247269!10405-106A9;0.000199703!10834-111D6;0.000396163!10835-111D7;0.000145021!10836-111D8;0.0138737!10837-111D9;0.132109!10699-109G6;0.0221649!10802-111A1;0.0019478!10796-110I4;0.00616916!10010-101C1;0.104078!10810-111A9;0.00502189!10421-106C7;0.01507!10708-109H6;0.000115225!12235-129G3;0.14927!12236-129G4;0.32725!12237-129G5;0.0313404!10167-103B5;0.702832!10151-102I7;0.00212828!10428-106D5;0.00214431!10795-110I3;0.081113!10805-111A4;0.00283068!10052-101G7;0.578066!10189-103D9;0.000605306!10589-108D4;0.0608601!10425-106D2;0.325404!10427-106D4;0.690822!10702-109G9;5.7925e-06!10432-106D9;0.027085!10496-107C1;0.0464091!10718-109I7;0.00110795!10011-101C2;0.000332227!10053-101G8;0.00115982!10686-109F2;0.0448219!10084-102B3;0.602815!10012-101C3;0.000259824!10085-102B4;0.00107693!10482-107A5;0.00532075!10419-106C5;0.0330297!10080-102A8;0.0359723!10760-110E4;0.00737521!10709-109H7;0.0403254!10710-109H8;0.31633!10703-109H1;0.116673!10719-109I8;0.597521!10642-109A3;0.803896!10177-103C6;0.219793!10164-103B2;0.000498563!10173-103C2;0.000883052!10166-103B4;0.0105724!10083-102B2;0.00393499!10188-103D8;0.00066592!10552-107I3;0.00122929!10553-107I4;0.00330644!10013-101C4;0.208563!10536-107G5;0.000403179!10618-108G6;0.029718!10423-106C9;0.030226!10785-110H2;0.0572257!12238-129G6;0.0812723!12239-129G7;0.0897104!12240-129G8;0.000756526!10416-106C2;0.556202!10801-110I9;0.00110917!10766-110F1;0.00364986!10824-111C5;0.00420323!10825-111C6;0.0300621!10826-111C7;0.021872!10454-106G4;0.0235696!10409-106B4;0.0388507!10638-108I8;0.0189869!10636-108I6;0.0243388!10513-107D9;0.117746!10420-106C6;0.050392!10082-102B1;0.601355!10014-101C5;3.65184e-05!10070-101I7;0.000271208!10452-106G2;0.000430131!10453-106G3;0.0120489!10449-106F8;0.00829544!10042-101F6;0.0123357!10069-101I6;0.00064928!10193-103E4;0.000838477!10631-108I1;0.000977276!10438-106E6;0.000172907!10488-107B2;0.0538379!10196-103E7;0.0373571!10071-101I8;0.00106742!10071-101I8;0.000346067!10041-101F5;0.0104337!10451-106G1;0.00768243!10450-106F9;0.135288!10604-108F1;0.292921!10605-108F2;0.0741808!10606-108F3;0.00863101!10603-108E9;0.0217536!10497-107C2;0.03659!10448-106F7;0.00411762!10643-109A4;0.0157303!10426-106D3;0.0293997!10431-106D8;0.0447257!10197-103E8;0.0520089!10443-106F2;0.00186312!10815-111B5;0.986849!10816-111B6;0.07002!10817-111B7;0.0808302!10015-101C6;0.0781395!10410-106B5;0.000262656!10054-101G9;0.0861557!10758-110E2;4.36374e-05!10711-109H9;0.000119793!10040-101F4;2.14802e-05!10470-106I2;0.00201238!10415-106C1;0.347814!10198-103E9;0.00966825!10614-108G2;0.000596635!10612-108F9;0.378153!10549-107H9;0.0862704!10615-108G3;0.0384716!10487-107B1;0.762908!10433-106E1;0.00514191!10688-109F4;0.0145089!10444-106F3;0.0905516!10444-106F3;0.911103!10485-107A8;0.749398!10413-106B8;0.188845!10175-103C4;0.237285!10161-103A8;0.000116231!12131-128D7;0.00130293!10624-108H3;0.106384!10712-109I1;0.0967111!10205-103F7;0.000607047!10206-103F8;0.000154338!10207-103F9;5.32181e-05!10050-101G5;0.00114036!10051-101G6;3.41792e-05!10016-101C7;2.8851e-05!10046-101G1;4.56302e-05!10778-110G4;2.35007e-05!10633-108I3;0.113153!10818-111B8;0.359469!10819-111B9;0.139325!10820-111C1;0.11668!10484-107A7;0.128148!10808-111A7;0.789565!10169-103B7;1.76696e-05!10153-102I9;0.00118028!13425-144D5;0.00142521!13433-144E4;0.304256!13437-144E8;0.385847!11904-125F5;0.381158!11905-125F6;0.000126662!10039-101F3;0.00510316!10791-110H8;0.00178047!10017-101C8;0.00796191!10045-101F9;0.000767139!10509-107D5;2.72528e-05!10839-111E2;0.000218899!10692-109F8;0.0451921!10079-102A7;0.451808!10078-102A6;9.85566e-05!10721-110A1;0.000102534!10569-108B2;0.180937!10570-108B3;0.216296!10571-108B4;0.801474!10647-109A8;0.0597569!10752-110D5;0.537335!10782-110G8;0.017557!10726-110A6;0.216286!10018-101C9;0.987865!10086-102B5;0.128029!10182-103D2;0.00329798!10165-103B3;0.00049802!10499-107C4;0.000790713!10408-106B3;0.0948619!10019-101D1;0.0932887!10068-101I5;0.00174663!10075-102A3;0.00162436!10077-102A5;0.00367383!10727-110A7;0.889124!10775-110G1;0.000140305!10412-106B7;2.28255e-06!12231-129F8;0.00882781!12232-129F9;0.0309169!12233-129G1;0.0104847!12234-129G2;0.020671!10414-106B9;0.10727!10170-103B8;0.105478!10183-103D3;0.00356608!10150-102I6;0.00200137!10174-103C3;0.00199667!10155-103A2;6.0165e-05!10038-101F2;0.000837867!10838-111E1;0.000490175!10759-110E3;0.604066!10514-107E1;0.384327!10465-106H6;0.286586!10691-109F7;0.0743751!10843-111E6;0.0351148!10844-111E7;0.865631!11747-123G1;0.497223!11748-123G2;0.643224!11749-123G3;0.342959!11750-123G4;0.696619!11751-123G5;0.108618!11840-124H4;0.0181915!11752-123G6;0.27073!11753-123G7;0.541521!11754-123G8;0.0935544!11755-123G9;0.731547!11756-123H1;0.462188!11833-124G6;0.94406!11760-123H5;0.0426961!11836-124G9;0.670675!11758-123H3;0.0532166!11835-124G8;0.280098!11762-123H7;0.00670138!11838-124H2;0.151383!11757-123H2;0.105383!11759-123H4;0.7944!11761-123H6;0.921887!11842-124H6;0.344072!11837-124H1;0.115513!10568-108B1;0.00260046!13230-141I8;0.600435!13231-141I9;0.00663598!10696-109G3;0.00785272!10493-107B7;0.0749792!10494-107B8;0.0232442!10850-111F4;0.115433!10851-111F5;0.233466!10852-111F6;0.118888!10853-111F7;0.076223!10854-111F8;0.0249427!10855-111F9;0.0100473!10856-111G1;0.663035!10847-111F1;0.688764!10846-111E9;0.84769!10848-111F2;0.0140977!10845-111E8;0.0230968!10857-111G2;0.0108384!10858-111G3;0.0962347!10156-103A3;0.032775!11901-125F2;0.00266177!11902-125F3;0.00239379!11903-125F4;0.000792724!10689-109F5;0.000413107!10648-109A9;0.14086!10784-110H1;0.0727178!10744-110C6;0.0144978!10772-110F7;0.00267047!10474-106I6;0.000406265!10600-108E6;0.000354669!10684-109E9;0.0697638!12226-129F3;0.0424001!12227-129F4;0.0512749!10508-107D4;0.204891!10539-107G8;0.524754!10607-108F4;0.146408!10555-107I6;0.896407!10774-110F9;0.660048!10637-108I7;0.561713!10663-109C6;0.495331!10728-110A8;0.721329!10729-110A9;0.681129!10430-106D7;0.0505941!10730-110B1;0.0284286!10813-111B3;0.993039!10812-111B2;0.00139257!10037-101F1;0.00958097!10172-103C1;0.00124312!10163-103B1;0.00368937!10076-102A4;0.00332288!10073-102A1;0.00225097!10036-101E9;0.0205038!10195-103E6;0.00114753!10277-104E7;0.00120937!10434-106E2;0.000112302!10550-107I1;0.00328402!10545-107H5;0.0217439!10544-107H4;0.00516171!10704-109H2;0.0183155!10510-107D6;0.825329!10558-107I9;0.131705!10020-101D2;0.873215!10732-110B3;0.000687817!10049-101G4;0.14081!10698-109G5;0.00919605!10437-106E5;0.0192132!10417-106C3;0.135468!10035-101E8;0.210803!10171-103B9;0.00190584!10157-103A4;0.0031925!10034-101E7;0.00349318!10072-101I9;0.00121018!10199-103F1;0.0123352!10200-103F2;0.0857469!10697-109G4;0.000648684!10723-110A3;0.230508!10179-103C8;0.443354!10160-103A7;4.25017e-05!10180-103C9;0.00130097!10162-103A9;0.0306784!10021-101D3;0.0348319!10840-111E3;0.0457393!10706-109H4;3.10812e-05!10033-101E6;0.474626!10032-101E5;0.00153161!10490-107B4;0.000873355!10439-106E7;0.0845423!10022-101D4;0.20181!10176-103C5;0.000412221!10469-106I1;0.000936635!10067-101I4;0.0694008!10411-106B6;9.4203e-05!10471-106I3;0.688469!10030-101E3;0.327589!10475-106I7;0.000161654!10787-110H4;0.989954!10477-106I9;0.164571!10695-109G2;0.839554!11771-123I7;0.0146302!11772-123I8;0.809864!11773-123I9;0.19508!10093-102C3;0.0675704!10442-106F1;0.0142546!10442-106F1;0.0256467!10201-103F3;0.0319111!10639-108I9;0.00259652!11843-124H7;0.580863!11841-124H5;0.996293!10693-109F9;0.101729!10436-106E4;0.162633!10483-107A6;0.0658697!10282-104F3;0.141812!10023-101D5;0.0282582!10066-101I3;0.00243825!10065-101I2;0.000343239!10800-110I8;0.000423376!10610-108F7;0.774855!10841-111E4;0.868159!10541-107H1;0.251488!10842-111E5;0.320257!10562-108A4;0.602211!10024-101D6;0.101405!10064-101I1;0.00343666!10609-108F6;0.000120634!10048-101G3;0.254993!10781-110G7;0.00238641!10181-103D1;0.163615!10159-103A6;0.00025145!10056-101H2;0.0023522!10737-110B8;0.000231899!10025-101D7;0.0492204!10044-101F8;0.388069!10424-106D1;0.0329901!10463-106H4;4.06233e-05!10616-108G4;0.0143005!10486-107A9;1.25097e-05!10062-101H8;0.00135501!10202-103F4;0.000870683!10158-103A5;0.00935234!10441-106E9;0.000891637!10031-101E4;0.789372!10063-101H9;0.00080635!10063-101H9;0.0155939!11763-123H8;0.000607405!11765-123I1;0.000744144!11768-123I4;0.0039463!10807-111A6;0.00652206!10790-110H7;0.848206!10798-110I6;0.709896!10786-110H3;0.798723!10591-108D6;0.591504!10593-108D8;0.885933!10590-108D5;0.710185!10026-101D8;0.36728!10096-102C6;0.000236035!10168-103B6;0.00361837!10154-103A1;0.00101467!10209-103G2;0.00142446!10061-101H7;0.00124837!10027-101D9;0.000336136!10043-101F7;0.0811749!10783-110G9;0.344136!10028-101E1;0.115326!10060-101H6;0.000574836!10203-103F5;0.000900831!10059-101H5;0.000282682!10047-101G2;0.000273356!10029-101E2;0.061045!10058-101H4;0.00675037!10418-106C4;0.00028168!10492-107B6;0.304846!10694-109G1;0.378548!10797-110I5;0.103035!10057-101H3;0.10248!10100-102D1;0.000461938!10055-101H1;0.00259374!10204-103F6;2.74686e-05!10191-103E2;0.00359019!10563-108A5;0.0141741
|name=CGGAAACGGAA,motif609,CNhs12591,T:337.0(15.06%),B:5266.2(7.76%),P:1e-30
|name=CGGAAACGGAA,motif609,CNhs12591,T:337.0(15.06%),B:5266.2(7.76%),P:1e-30
|tomtom_result=id1#MA0120.1;0;0.00017325;0.0824668;0.109164;11;CGGAAACGGAA;CGAAAAGGAAAA;-!HAL9#MA0311.1;0;0.000231348;0.110122;0.109164;5;CGGAAACGGAA;CGGAA;+!ETS1#MA0098.1;0;0.000354716;0.168845;0.111584;6;CGGAAACGGAA;CGGAAA;-!GABPA#MA0062.2;1;0.000694918;0.330781;0.133495;10;CGGAAACGGAA;CCGGAAGTGGC;+!STAT1#MA0137.1;-1;0.000820088;0.390362;0.133495;10;CGGAAACGGAA;GGAAAACGAAACTG;+!LEU3#MA0324.1;1;0.00084874;0.404;0.133495;9;CGGAAACGGAA;CCGGTAACGG;-!Eip74EF#MA0026.1;1;0.00141182;0.672028;0.190338;6;CGGAAACGGAA;CCGGAAG;+!SPI1#MA0080.1;0;0.00296348;1.41061;0.290675;6;CGGAAACGGAA;CGGAAG;+!CAT8#MA0280.1;1;0.00296348;1.41061;0.290675;5;CGGAAACGGAA;CCGGAA;+!CEP3#MA0282.1;2;0.00308011;1.46613;0.290675;6;CGGAAACGGAA;CTCGGAAA;+!ASG1#MA0275.1;1;0.00363664;1.73104;0.311997;5;CGGAAACGGAA;CCGGAA;+!TBS1#MA0404.1;0;0.00420751;2.00278;0.330892;8;CGGAAACGGAA;CGGATCCG;+!Su(H)#MA0085.1;4;0.00467605;2.2258;0.339452;11;CGGAAACGGAA;CTGTGGGAAACGAGAT;+!STB4#MA0391.1;2;0.0052098;2.47986;0.351185;5;CGGAAACGGAA;CTCGGAA;+!ELK1#MA0028.1;-2;0.00589244;2.8048;0.355164;9;CGGAAACGGAA;GAGCCGGAAG;+!IXR1#MA0323.1;4;0.00622602;2.96359;0.355164;11;CGGAAACGGAA;AAGCCGGAAGCGGGG;+!GABPA#MA0062.2;2;0.00639787;3.04539;0.355164;8;CGGAAACGGAA;ACCGGAAGAG;+!SPIB#MA0081.1;-4;0.00776235;3.69488;0.39758;7;CGGAAACGGAA;AGAGGAA;+!YRM1#MA0438.1;1;0.00803417;3.82427;0.39758;7;CGGAAACGGAA;ACGGAAAT;+!RDR1#MA0360.1;2;0.00842581;4.01069;0.39758;6;CGGAAACGGAA;TGCGGAAC;+!che-1#MA0260.1;-2;0.0113762;5.41505;0.494951;6;CGGAAACGGAA;GAAACC;+!IRF2#MA0051.1;-1;0.0115383;5.49224;0.494951;10;CGGAAACGGAA;GGAAAGCGAAACCAAAAC;+!YKL222C#MA0428.1;-4;0.016078;7.65312;0.623001;7;CGGAAACGGAA;AACGGAAAT;+!Pax5#MA0014.1;6;0.0165039;7.85584;0.623001;11;CGGAAACGGAA;GGAGCACTGAAGCGTAACCG;+!SIP4#MA0380.1;2;0.0189958;9.042;0.663266;5;CGGAAACGGAA;TCCGGAG;-!IRF1#MA0050.1;-2;0.0206865;9.84678;0.663266;9;CGGAAACGGAA;GAAAGCGAAACC;+
}}
}}

Latest revision as of 14:50, 7 September 2012

Full Name: CGGAAACGGAA,motif609,CNhs12591,T:337.0(15.06%),B:5266.2(7.76%),P:1e-30

Motif matrix
POACGT
151.224285.1020.3370.337
235.04810.11291.5050.337
30.33719.883316.4430.337
4335.9890.3370.3370.337
5229.83480.8825.9490.337
6160.74947.85481.89146.169
770.433173.89258.97533.7
80.33747.18259.4929.993
943.4730.337292.8530.337
10241.96618.87275.8250.337
11283.080.33753.2460.337

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
id1#MA0120.100.000173250.08246680.10916411CGGAAACGGAACGAAAAGGAAAA-
HAL9#MA0311.100.0002313480.1101220.1091645CGGAAACGGAACGGAA+
ETS1#MA0098.100.0003547160.1688450.1115846CGGAAACGGAACGGAAA-
GABPA#MA0062.210.0006949180.3307810.13349510CGGAAACGGAACCGGAAGTGGC+
STAT1#MA0137.1-10.0008200880.3903620.13349510CGGAAACGGAAGGAAAACGAAACTG+
LEU3#MA0324.110.000848740.4040.1334959CGGAAACGGAACCGGTAACGG-
Eip74EF#MA0026.110.001411820.6720280.1903386CGGAAACGGAACCGGAAG+
SPI1#MA0080.100.002963481.410610.2906756CGGAAACGGAACGGAAG+
CAT8#MA0280.110.002963481.410610.2906755CGGAAACGGAACCGGAA+
CEP3#MA0282.120.003080111.466130.2906756CGGAAACGGAACTCGGAAA+
ASG1#MA0275.110.003636641.731040.3119975CGGAAACGGAACCGGAA+
TBS1#MA0404.100.004207512.002780.3308928CGGAAACGGAACGGATCCG+
Su(H)#MA0085.140.004676052.22580.33945211CGGAAACGGAACTGTGGGAAACGAGAT+
STB4#MA0391.120.00520982.479860.3511855CGGAAACGGAACTCGGAA+
ELK1#MA0028.1-20.005892442.80480.3551649CGGAAACGGAAGAGCCGGAAG+
IXR1#MA0323.140.006226022.963590.35516411CGGAAACGGAAAAGCCGGAAGCGGGG+
GABPA#MA0062.220.006397873.045390.3551648CGGAAACGGAAACCGGAAGAG+
SPIB#MA0081.1-40.007762353.694880.397587CGGAAACGGAAAGAGGAA+
YRM1#MA0438.110.008034173.824270.397587CGGAAACGGAAACGGAAAT+
RDR1#MA0360.120.008425814.010690.397586CGGAAACGGAATGCGGAAC+
che-1#MA0260.1-20.01137625.415050.4949516CGGAAACGGAAGAAACC+
IRF2#MA0051.1-10.01153835.492240.49495110CGGAAACGGAAGGAAAGCGAAACCAAAAC+
YKL222C#MA0428.1-40.0160787.653120.6230017CGGAAACGGAAAACGGAAAT+
Pax5#MA0014.160.01650397.855840.62300111CGGAAACGGAAGGAGCACTGAAGCGTAACCG+
SIP4#MA0380.120.01899589.0420.6632665CGGAAACGGAATCCGGAG-
IRF1#MA0050.1-20.02068659.846780.6632669CGGAAACGGAAGAAAGCGAAACC+
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