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|gostat_on_MCL_coexpression=GO:0005509;calcium ion binding;0.0428953651058341;16998,23876!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0428953651058341;16998!GO:0019838;growth factor binding;0.0428953651058341;16998!
|gostat_on_MCL_coexpression=GO:0005509;calcium ion binding;0.0428953651058341;16998,23876!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0428953651058341;16998!GO:0019838;growth factor binding;0.0428953651058341;16998!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004872!1.85e-09!33;UBERON:0004535!2.72e-08!23;UBERON:0001009!2.72e-08!23;UBERON:0002048!7.66e-08!14;UBERON:0000117!7.66e-08!14;UBERON:0000171!7.66e-08!14;UBERON:0000170!7.66e-08!14;UBERON:0005597!7.66e-08!14;UBERON:0000118!7.66e-08!14;UBERON:0007100!8.97e-07!18;UBERON:0000948!8.97e-07!18;UBERON:0005498!8.97e-07!18;UBERON:0004140!8.97e-07!18;UBERON:0009881!8.97e-07!18;UBERON:0004141!8.97e-07!18;UBERON:0003084!8.97e-07!18;UBERON:0007005!8.97e-07!18;UBERON:0004139!8.97e-07!18;UBERON:0004291!8.97e-07!18
}}
}}

Revision as of 16:20, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:103048104..103048117,-p@chr12:103048104..103048117
-
Mm9::chr12:103057084..103057106,-p1@Fbln5
Mm9::chr12:103057115..103057130,-p5@Fbln5
Mm9::chr12:103057153..103057162,-p10@Fbln5
Mm9::chr12:103057164..103057173,-p9@Fbln5
Mm9::chr12:86217111..86217125,-p4@Ltbp2
Mm9::chr3:53064433..53064458,+p@chr3:53064433..53064458
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005509calcium ion binding0.0428953651058341
GO:0007179transforming growth factor beta receptor signaling pathway0.0428953651058341
GO:0019838growth factor binding0.0428953651058341



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
splanchnic layer of lateral plate mesoderm1.85e-0933
cardiovascular system2.72e-0823
circulatory system2.72e-0823
lung7.66e-0814
respiratory tube7.66e-0814
respiration organ7.66e-0814
pair of lungs7.66e-0814
lung primordium7.66e-0814
lung bud7.66e-0814
primary circulatory organ8.97e-0718
heart8.97e-0718
primitive heart tube8.97e-0718
primary heart field8.97e-0718
anterior lateral plate mesoderm8.97e-0718
heart tube8.97e-0718
heart primordium8.97e-0718
cardiac mesoderm8.97e-0718
cardiogenic plate8.97e-0718
heart rudiment8.97e-0718


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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