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MCL coexpression mm9:2472: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0009569!1.10e-11!66;UBERON:0005177!1.25e-11!79;UBERON:0000464!3.69e-10!57;UBERON:0000466!3.27e-09!79;UBERON:0000468!4.52e-09!333;UBERON:0002048!9.26e-09!14;UBERON:0000117!9.26e-09!14;UBERON:0000171!9.26e-09!14;UBERON:0000170!9.26e-09!14;UBERON:0005597!9.26e-09!14;UBERON:0000118!9.26e-09!14;UBERON:0002100!1.98e-08!90;UBERON:0002113!2.37e-07!14;UBERON:0003918!2.37e-07!14;UBERON:0011143!2.37e-07!14;UBERON:0005095!2.37e-07!14;UBERON:0007687!2.37e-07!14;UBERON:0005157!6.26e-07!20;UBERON:0000991!8.14e-07!18;UBERON:0005564!8.14e-07!18
}}
}}

Revision as of 18:31, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr7:77509967..77509988,+p3@uc009hnk.1
p3@uc009hnl.1
Mm9::chr7:77510146..77510149,+p4@uc009hnk.1
p4@uc009hnl.1
Mm9::chr7:77510235..77510247,+p2@uc009hnk.1
p2@uc009hnl.1
Mm9::chr7:77510261..77510285,+p1@uc009hnk.1
p1@uc009hnl.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
subdivision of trunk1.10e-1166
trunk region element1.25e-1179
anatomical space3.69e-1057
immaterial anatomical entity3.27e-0979
multi-cellular organism4.52e-09333
lung9.26e-0914
respiratory tube9.26e-0914
respiration organ9.26e-0914
pair of lungs9.26e-0914
lung primordium9.26e-0914
lung bud9.26e-0914
trunk1.98e-0890
kidney2.37e-0714
kidney mesenchyme2.37e-0714
upper urinary tract2.37e-0714
kidney rudiment2.37e-0714
kidney field2.37e-0714
epithelial fold6.26e-0720
gonad8.14e-0718
gonad primordium8.14e-0718


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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