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MCL coexpression mm9:2523: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000181!3.74e-07!5;CL:0000417!3.74e-07!5;CL:0000668!3.74e-07!5;CL:0000412!3.74e-07!5;CL:0000182!3.74e-07!5
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!8.57e-30!22;UBERON:0007499!8.57e-30!22;UBERON:0006925!8.57e-30!22;UBERON:0009497!8.57e-30!22;UBERON:0000015!8.57e-30!22;UBERON:0002423!8.57e-30!22;UBERON:0006235!8.57e-30!22;UBERON:0008835!8.57e-30!22;UBERON:0003894!8.57e-30!22;UBERON:0004161!8.57e-30!22;UBERON:0008836!8.57e-30!22;UBERON:0009854!2.96e-28!23;UBERON:0009856!2.96e-28!23;UBERON:0002365!1.50e-25!25;UBERON:0002330!1.50e-25!25;UBERON:0005172!1.22e-15!49;UBERON:0005173!1.22e-15!49;UBERON:0002417!1.22e-15!49;UBERON:0000916!1.22e-15!49;UBERON:0005256!4.01e-13!45;UBERON:0003104!2.41e-11!61;UBERON:0009142!2.41e-11!61;UBERON:0003914!4.34e-11!47;UBERON:0009569!4.98e-10!66;UBERON:0003929!9.60e-09!55;UBERON:0002368!1.63e-08!60;UBERON:0002530!1.81e-07!65;UBERON:0005177!2.02e-07!79
}}
}}

Revision as of 18:36, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:122063906..122063911,+p@chr10:122063906..122063911
+
Mm9::chr3:82816755..82816779,+p@chr3:82816755..82816779
+
Mm9::chr3:82816761..82816778,-p@chr3:82816761..82816778
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell3.74e-075
endopolyploid cell3.74e-075
parenchymal cell3.74e-075
polyploid cell3.74e-075
hepatocyte3.74e-075

Uber Anatomy
Ontology termp-valuen
liver8.57e-3022
epithelial sac8.57e-3022
digestive gland8.57e-3022
epithelium of foregut-midgut junction8.57e-3022
anatomical boundary8.57e-3022
hepatobiliary system8.57e-3022
foregut-midgut junction8.57e-3022
hepatic diverticulum8.57e-3022
liver primordium8.57e-3022
septum transversum8.57e-3022
liver bud8.57e-3022
digestive tract diverticulum2.96e-2823
sac2.96e-2823
exocrine gland1.50e-2525
exocrine system1.50e-2525
abdomen element1.22e-1549
abdominal segment element1.22e-1549
abdominal segment of trunk1.22e-1549
abdomen1.22e-1549
trunk mesenchyme4.01e-1345
mesenchyme2.41e-1161
entire embryonic mesenchyme2.41e-1161
epithelial tube4.34e-1147
subdivision of trunk4.98e-1066
gut epithelium9.60e-0955
endocrine gland1.63e-0860
gland1.81e-0765
trunk region element2.02e-0779


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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