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MCL coexpression mm9:375: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0.165461429054049,0.503695146742144,0.374123994178123,0.71814888116037,0.886512620538474,0.393521832553126,0.788131454053247,0.446442799058735,0.320525599752868,0.239111439797245,0.532183320334743,0.407849296309079,0.518362557757318,0.39056307879366,0,0.573871592575302,0.598568621642185,0.529421754782905,0.553562137336854,0.522102907914384,0,0,0.732503042704586,1.066928321968,0.975941615895162,0.700671165363817,0.684063147326383,0.54031963807752,1.03170983716689,0.610447274337778,0.552270471080913,0.195802371688314,0,0,0.311779540231573,0.367477138158572,0.211455637783656,0.0897972040304155,0.188703864876574,0.199492929008063,0.13413168602021,0.11806411727732,0.304973298637627,0.00587463731770145,0,0,0,0,0,0,0,0,0.550524333845001,0.290112400016867,0.479512370320439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0303728388443763,0,0,0,0,0,0.525950150696361,0.60153730248821,0.574137066941655,1.10946963978442,0,0,0,0.0358415802650124,0.0490726221404411,0,0.612239949096654,0.676303978721818,0.277567487789758,0.531148003429891,0.530115366252877,0,0.717048319558345,0.732752176807552,0.739364329730309,0,0,0,0,0,0,0,0,0,0,0.0512665194353664,0,0,0,0,0,0,0,0,0.353582350833735,0.324660743215415,0.322335098545917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28613805841715,0.383423993879336,0,0,0,0,0.0129198740618618,0,0.00233150193700966,0,0,0,0,0.0330077287713024,0,0.0592603993571966,0.0536415386850057,0.0273460503695069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.019300695297166,0.021448031160807,0.05774354172754,0.0505333231410966,0.0932469980238802,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00700842643519175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.776921687825288,0.720738520806555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119260674054042,0.197166744087393,0.15063362961962,0,0,0,0,0,0,0,0,0,0.011955545919601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0543743054808715,0.576708936551556,0.5670646580101,0.538210856140588,0,0,0,0,0,0,0,0,0.593973036901909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0118583069965932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0.165461429054049,0.503695146742144,0.374123994178123,0.71814888116037,0.886512620538474,0.393521832553126,0.788131454053247,0.446442799058735,0.320525599752868,0.239111439797245,0.532183320334743,0.407849296309079,0.518362557757318,0.39056307879366,0,0.573871592575302,0.598568621642185,0.529421754782905,0.553562137336854,0.522102907914384,0,0,0.732503042704586,1.066928321968,0.975941615895162,0.700671165363817,0.684063147326383,0.54031963807752,1.03170983716689,0.610447274337778,0.552270471080913,0.195802371688314,0,0,0.311779540231573,0.367477138158572,0.211455637783656,0.0897972040304155,0.188703864876574,0.199492929008063,0.13413168602021,0.11806411727732,0.304973298637627,0.00587463731770145,0,0,0,0,0,0,0,0,0.550524333845001,0.290112400016867,0.479512370320439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0303728388443763,0,0,0,0,0,0.525950150696361,0.60153730248821,0.574137066941655,1.10946963978442,0,0,0,0.0358415802650124,0.0490726221404411,0,0.612239949096654,0.676303978721818,0.277567487789758,0.531148003429891,0.530115366252877,0,0.717048319558345,0.732752176807552,0.739364329730309,0,0,0,0,0,0,0,0,0,0,0.0512665194353664,0,0,0,0,0,0,0,0,0.353582350833735,0.324660743215415,0.322335098545917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28613805841715,0.383423993879336,0,0,0,0,0.0129198740618618,0,0.00233150193700966,0,0,0,0,0.0330077287713024,0,0.0592603993571966,0.0536415386850057,0.0273460503695069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.019300695297166,0.021448031160807,0.05774354172754,0.0505333231410966,0.0932469980238802,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00700842643519175,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.776921687825288,0.720738520806555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119260674054042,0.197166744087393,0.15063362961962,0,0,0,0,0,0,0,0,0,0.011955545919601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0543743054808715,0.576708936551556,0.5670646580101,0.538210856140588,0,0,0,0,0,0,0,0,0.593973036901909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0118583069965932,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002371!2.59e-19!118;CL:0000548!1.65e-17!115;CL:0000255!1.65e-17!115;CL:0000066!1.29e-16!25;CL:0000988!4.69e-15!32;CL:0002032!4.69e-15!32;CL:0000037!4.69e-15!32;CL:0000566!4.69e-15!32;CL:0000837!4.69e-15!32;CL:0002320!4.50e-14!46;CL:0000134!4.50e-14!46;CL:0002076!9.98e-14!15;CL:0000219!6.41e-13!54;CL:0002031!8.81e-13!25;CL:0000223!3.52e-12!20;CL:0000034!1.32e-10!97;CL:0000838!1.11e-09!12;CL:0002563!1.17e-09!9;CL:0002251!1.17e-09!9;CL:0000738!3.53e-09!17;CL:0002087!3.53e-09!17;CL:0000084!9.75e-09!11;CL:0000827!9.75e-09!11;CL:0000791!1.01e-08!9;CL:0000789!1.01e-08!9;CL:0002420!1.01e-08!9;CL:0002419!1.01e-08!9;CL:0000790!1.01e-08!9;CL:0000542!1.04e-08!13;CL:0000051!1.04e-08!13;CL:0000075!3.31e-08!7;CL:0000624!7.05e-08!8;CL:0002242!8.86e-08!16;CL:0000049!9.90e-08!19;CL:0000723!1.42e-07!91;CL:0000048!1.42e-07!91;CL:0000239!1.49e-07!6;CL:0000677!1.49e-07!6;CL:0000212!1.49e-07!6;CL:0000584!1.49e-07!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000344!3.70e-14!15;UBERON:0002384!4.50e-14!46;UBERON:0001242!1.09e-11!13;UBERON:0000060!1.09e-11!13;UBERON:0001262!1.09e-11!13;UBERON:0004786!1.09e-11!13;UBERON:0000485!6.18e-11!11;UBERON:0003350!1.17e-09!9;UBERON:0004808!1.17e-09!9;UBERON:0001277!1.17e-09!9;UBERON:0004923!3.17e-07!24
}}
}}

Revision as of 20:34, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127398581..127398605,+p@chr10:127398581..127398605
+
Mm9::chr11:52060053..52060061,+p@chr11:52060053..52060061
+
Mm9::chr12:107697344..107697367,+p1@ENSMUST00000167139
Mm9::chr12:24588010..24588052,+p@chr12:24588010..24588052
+
Mm9::chr12:7604740..7604741,+p@chr12:7604740..7604741
+
Mm9::chr13:30823618..30823626,+p1@ENSMUST00000120583
Mm9::chr13:83826797..83826824,+p@chr13:83826797..83826824
+
Mm9::chr14:13700032..13700054,+p1@ENSMUST00000022260
Mm9::chr14:39193635..39193657,+p1@Gm3386
Mm9::chr16:42955668..42955678,+p4@BC002163
Mm9::chr17:47547456..47547498,+p@chr17:47547456..47547498
+
Mm9::chr2:25398946..25398959,+p1@ENSMUST00000121701
Mm9::chr3:18433512..18433515,+p1@ENSMUST00000069626
Mm9::chr4:129013260..129013285,+p3@Zbtb8os
Mm9::chr5:138056838..138056849,+p1@ENSMUST00000117679
Mm9::chr5:42158898..42158902,+p@chr5:42158898..42158902
+
Mm9::chr7:98120896..98120913,+p@chr7:98120896..98120913
+
Mm9::chr8:99687664..99687683,+p@chr8:99687664..99687683
+
Mm9::chrX:153452085..153452103,-p1@ENSMUST00000120749
Mm9::chrX:5561787..5561828,+p1@ENSMUST00000119984


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
somatic cell2.59e-19118
animal cell1.65e-17115
eukaryotic cell1.65e-17115
epithelial cell1.29e-1625
hematopoietic cell4.69e-1532
hematopoietic oligopotent progenitor cell4.69e-1532
hematopoietic stem cell4.69e-1532
angioblastic mesenchymal cell4.69e-1532
hematopoietic multipotent progenitor cell4.69e-1532
connective tissue cell4.50e-1446
mesenchymal cell4.50e-1446
endo-epithelial cell9.98e-1415
motile cell6.41e-1354
hematopoietic lineage restricted progenitor cell8.81e-1325
endodermal cell3.52e-1220
stem cell1.32e-1097
lymphoid lineage restricted progenitor cell1.11e-0912
intestinal epithelial cell1.17e-099
epithelial cell of alimentary canal1.17e-099
leukocyte3.53e-0917
nongranular leukocyte3.53e-0917
T cell9.75e-0911
pro-T cell9.75e-0911
mature alpha-beta T cell1.01e-089
alpha-beta T cell1.01e-089
immature T cell1.01e-089
mature T cell1.01e-089
immature alpha-beta T cell1.01e-089
lymphocyte1.04e-0813
common lymphoid progenitor1.04e-0813
columnar/cuboidal epithelial cell3.31e-087
CD4-positive, alpha-beta T cell7.05e-088
nucleate cell8.86e-0816
common myeloid progenitor9.90e-0819
somatic stem cell1.42e-0791
multi fate stem cell1.42e-0791
brush border epithelial cell1.49e-076
gut absorptive cell1.49e-076
absorptive cell1.49e-076
enterocyte1.49e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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