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MCL coexpression mm9:2679: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!5.76e-08!46
|ontology_enrichment_uberon=UBERON:0002384!5.76e-08!46
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.66329,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.99159,0.825437,1.24901,0.575271,0.411696,0.608816,0.444545,0.563758,0.902078,0.536514,1.24975,0.582863,0.831295,0.261619,0.610669,0.474221,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,1.19585,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,0.684144,0.476502,2.61188,1.00151,0.459035,1.32978,1.62246,9.00463,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,1.1471,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,1.79943,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.721422,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.421338
}}
}}

Revision as of 21:47, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:51449557..51449578,+p@chr11:51449557..51449578
+
Mm9::chr1:133904496..133904520,-p@chr1:133904496..133904520
-
Mm9::chr6:145255569..145255570,+p@chr6:145255569..145255570
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell1.44e-1232
hematopoietic oligopotent progenitor cell1.44e-1232
hematopoietic stem cell1.44e-1232
angioblastic mesenchymal cell1.44e-1232
hematopoietic multipotent progenitor cell1.44e-1232
lymphoid lineage restricted progenitor cell5.34e-1212
mature alpha-beta T cell1.59e-119
alpha-beta T cell1.59e-119
immature T cell1.59e-119
mature T cell1.59e-119
immature alpha-beta T cell1.59e-119
lymphocyte7.82e-1113
common lymphoid progenitor7.82e-1113
T cell1.16e-1011
pro-T cell1.16e-1011
CD4-positive, alpha-beta T cell2.24e-108
nucleate cell5.76e-1016
hematopoietic lineage restricted progenitor cell6.38e-0925
connective tissue cell5.76e-0846
mesenchymal cell5.76e-0846
thymocyte6.56e-086
double negative thymocyte6.56e-086
naive T cell6.56e-086
double-positive, alpha-beta thymocyte6.56e-086
CD4-positive, alpha-beta thymocyte6.56e-086
naive thymus-derived CD4-positive, alpha-beta T cell6.56e-086
DN4 thymocyte6.56e-086
DN1 thymic pro-T cell6.56e-086
DN2 thymocyte6.56e-086
DN3 thymocyte6.56e-086
immature single positive thymocyte6.56e-086
early T lineage precursor6.56e-086
mature CD4 single-positive thymocyte6.56e-086
resting double-positive thymocyte6.56e-086
double-positive blast6.56e-086
CD69-positive double-positive thymocyte6.56e-086
CD69-positive, CD4-positive single-positive thymocyte6.56e-086
CD4-positive, CD8-intermediate double-positive thymocyte6.56e-086
CD24-positive, CD4 single-positive thymocyte6.56e-086
leukocyte1.42e-0717
nongranular leukocyte1.42e-0717

Uber Anatomy
Ontology termp-valuen
connective tissue5.76e-0846


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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