FFCP PHASE1:Hg19::chr10:120101804..120101843,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=63877|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=25794|TSSclassifier=S|UniProt=Q9H8W3,F2Z2Y3|association_with_transcript=0bp_to_ENST00000369172,ENST00000369183,ENST00000469758,ENST00000470476,ENST00000487269,NM_001134672,NM_022063,uc001ldo.2,uc010qss.1_5end|description=CAGE_peak_1_at_FAM204A_5end|id=chr10:120101804..120101843,-|ontology_enrichment_celltype=CL:0002057!7.63e-10!42;CL:0000839!1.22e-09!70;CL:0000860!3.34e-09!45;CL:0000766!1.71e-08!76;CL:0002031!3.05e-08!124;CL:0000557!7.49e-08!71;CL:0000738!7.65e-08!140;CL:0000037!1.31e-07!172;CL:0000566!1.31e-07!172;CL:0002194!2.75e-07!63;CL:0000576!2.75e-07!63;CL:0000040!2.75e-07!63;CL:0000559!2.75e-07!63;CL:0002009!6.10e-07!65;CL:0002087!6.10e-07!119;CL:0002032!6.22e-07!165;CL:0000837!6.22e-07!165;CL:0000763!9.16e-07!112;CL:0000049!9.16e-07!112|ontology_enrichment_celltype_v019=CL:0000576;5.02e-07;48|ontology_enrichment_celltype_v019_2=CL:0000839,2.02e-10,66;CL:0000860,7.63e-10,42;CL:0002057,7.63e-10,42;CL:0000766,3.85e-09,72;CL:0002031,1.15e-08,120;CL:0000557,1.72e-08,67;CL:0000738,3.27e-08,136;CL:0000473,4.59e-08,48;CL:0000234,4.59e-08,48;CL:0002194,6.03e-08,59;CL:0000576,6.03e-08,59;CL:0000040,6.03e-08,59;CL:0000559,6.03e-08,59;CL:0000037,6.48e-08,168;CL:0002009,1.49e-07,61;CL:0002087,2.56e-07,115;CL:0002032,3.17e-07,161;CL:0000837,3.17e-07,161;CL:0000763,3.77e-07,108;CL:0000049,3.77e-07,108;CL:0000988,4.77e-07,177|ontology_enrichment_development_v019=CL:0002057;5.68e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.17e-11!115;UBERON:0002390!1.17e-07!102;UBERON:0003061!1.17e-07!102;UBERON:0004765!1.62e-07!101;UBERON:0001434!1.62e-07!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.33e-11,114;UBERON:0002390,4.04e-08,98;UBERON:0003061,4.04e-08,98;UBERON:0001434,2.23e-07,100;UBERON:0002371,3.28e-07,76;UBERON:0001474,3.85e-07,82;UBERON:0004765,7.63e-07,90|phase1_expression=42.3310623700397,28.0471686297188,39.6081875509679,36.0263874071269,36.6508097430376,34.8935409640147,17.7309914717817,37.271472532183,17.2382514611893,15.4812379995951,5.58240934377942,17.693751142544,9.23184423799587,38.8626348294546,23.8606110524099,34.9609076154923,28.9293373451509,20.4486825308465,24.3966399395254,17.8525534211342,7.75202626728161,5.01527554364941,40.0730381983479,26.8273873142853,25.3596131981502,34.3096191808301,39.2440817570741,38.2534397184481,32.2558707016101,60.6450448993596,56.0434366404195,16.5495820406207,9.93979531968225,28.1013047726759,20.4513409531996,40.9447389563774,37.5808562348604,71.4654077006122,43.919233995961,42.3171197895911,40.7526163116662,36.2760905941257,40.6969396862015,40.1299139031599,40.0548500310138,46.3335556868729,36.9562168680039,32.4822631537242,40.5715345872586,33.3723175093695,39.1925880989524,64.3231665296952,32.4060939892421,43.2474738001163,44.6907405761328,36.5190138712653,42.3004532589661,58.8775529246122,41.3213254700718,44.9300637906531,47.310947309129,44.20007422502,35.9034583718937,39.2126770490079,45.2726412260591,33.4757282567772,40.4834461847124,38.4410457842817,43.8045651472969,67.3285418585861,31.4807741369352,53.4002572181969,65.5077142002631,76.8969242175468,76.5375479874157,77.5736988380991,58.9725313519099,72.6856161352891,85.1845609494525,61.5627526481097,79.1688375252379,81.1028842714975,43.9990611153307,51.8831680699025,43.5859534393142,43.9532129243502,42.0415786387813,52.302472035858,44.9510513493706,52.472956499445,35.2912040847858,35.2342313622563,36.3159566718967,39.6513985737078,71.1845874986551,40.8245331401369,43.0794396549294,25.1526888159465,26.9337963689357,40.6263183799348,39.1106719960308,33.1413464014313,31.1722765452658,37.211092599648,40.6556152315275,44.0852450221406,49.0154993414678,23.5688028295242,23.4106825607781,27.9544437826249,31.7802520453726,51.5849492608393,41.2236645590528,55.91603307075,33.4513676175926,40.224816657636,32.9569624497652,32.9882347663325,54.1462140921736,36.9535880615952,49.4823424930878,45.621698133522,49.689789295665,64.249278799518,44.9750615588445,38.1211375790867,42.6986558398944,36.2892137804518,20.3254548795466,28.5304075649114,12.1903433156981,32.1936412657745,39.3816690478073,62.1675342101454,36.5976674764199,30.7074620196946,58.0558741347302,20.9252994230133,38.8538098544319,26.6075276955077,24.1545660656097,34.643965469145,9.10738220731355,12.977455497455,34.7265711210511,31.8657419257659,19.4118622357543,52.7064279714806,48.6195674163109,62.0334027220373,27.2304498092386,23.2263340678654,24.2998351125316,32.2225526896685,21.3944712467052,22.2845613971455,20.2725117540706,28.9426770269648,43.4034840477786,52.2164155912886,27.392393563422,34.2122447573331,18.3046543161127,43.7519065611584,15.3926970097534,41.9708722935175,36.3737583654395,28.8285390037305,22.9974956198825,16.1375162126582,15.3889464901542,26.3560834872127,38.7780264148325,6.54141078213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39.8040058792043,42.3979194771741,38.9009737376511,61.442033419349,52.9117150829291,47.9841894868261,19.1619815268344,22.6639063257597,15.1905882799225,34.7196465121405,44.0611136926795,57.8121724333458,56.237623100197,45.0577216372581,44.898393617286,55.7914305198584,43.8606213485746,46.6438507685937,75.8005063189965,31.0462699164217,26.2493899580361,40.6903303884777,38.8457986711444,60.1028185167426,31.4893414077368,34.454962279178,44.9298584726036,57.2984848994691,37.7535720250754,35.2217645834225,35.7052800073542,40.8949013751178,58.7612306285847,66.424502705368,25.5684441742659,31.5254283179187,32.9648664642065,40.0983412831042,29.2325181705544,27.8979420883501,43.1168515310397,30.4650318597496,36.8844772210206,32.2657921707565,31.7979444434482,48.1854641878711,71.4725284412615,64.4213339979232,33.8709640152743,35.9697783614159,48.3921961636339,45.8658690709168,22.1473754959629,38.0822906427143,30.1137274706205,42.0828744172132,51.2287406212673,13.9177731760584,42.2568563961451,44.6824375212622,33.0258286767871,54.9410819392367,44.1619180772334,21.1085792151224,25.0598320320678,33.0305396702003,32.5653745150896,19.753326447184,61.7773770819842,61.747255340626,42.7952458310581,68.6177184755569,24.0913764722538,32.1162246759974,43.0446344347729,20.1108610477561,42.0752266443951,38.7462046774277,29.9960640958338,54.0826811484994,38.7078285770654,39.909447656195,35.6915562047114,56.7977623895465,23.4570641158656,39.7079128209743,36.5028519955626,31.2475815260071,32.3522940041993,40.2342702775124,20.1866279736126,26.1144716993232,27.8736702225161,16.726168077685,35.5399149003195,50.2665100455602,28.079244400746,67.6703775088878,47.1616869074874,39.8001330940214,40.7526003695867,32.6247992308501,38.8045023285897,29.5817207048908,31.0994318622248,32.8546357361197,40.0977097152439,33.9556877449808,39.40673136935,32.1699303020164,25.1223157744411,37.6541578311551,33.5986960111474,30.9332420721703,39.382390628877,44.4066249259962,34.6725280131425,25.81050366438,56.8422715450329,43.1309949014683,32.6220819350901,31.1974380066091,28.2100273226845|short_description=p1@FAM204A}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=63877 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25794 | |||
|TSSclassifier=S | |||
|UniProt=Q9H8W3,F2Z2Y3 | |||
|association_with_transcript=0bp_to_ENST00000369172,ENST00000369183,ENST00000469758,ENST00000470476,ENST00000487269,NM_001134672,NM_022063,uc001ldo.2,uc010qss.1_5end | |||
|description=CAGE_peak_1_at_FAM204A_5end | |||
|id=chr10:120101804..120101843,- | |||
|ontology_enrichment_celltype=CL:0002057!7.63e-10!42;CL:0000839!1.22e-09!70;CL:0000860!3.34e-09!45;CL:0000766!1.71e-08!76;CL:0002031!3.05e-08!124;CL:0000557!7.49e-08!71;CL:0000738!7.65e-08!140;CL:0000037!1.31e-07!172;CL:0000566!1.31e-07!172;CL:0002194!2.75e-07!63;CL:0000576!2.75e-07!63;CL:0000040!2.75e-07!63;CL:0000559!2.75e-07!63;CL:0002009!6.10e-07!65;CL:0002087!6.10e-07!119;CL:0002032!6.22e-07!165;CL:0000837!6.22e-07!165;CL:0000763!9.16e-07!112;CL:0000049!9.16e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000576;5.02e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,2.02e-10,66;CL:0000860,7.63e-10,42;CL:0002057,7.63e-10,42;CL:0000766,3.85e-09,72;CL:0002031,1.15e-08,120;CL:0000557,1.72e-08,67;CL:0000738,3.27e-08,136;CL:0000473,4.59e-08,48;CL:0000234,4.59e-08,48;CL:0002194,6.03e-08,59;CL:0000576,6.03e-08,59;CL:0000040,6.03e-08,59;CL:0000559,6.03e-08,59;CL:0000037,6.48e-08,168;CL:0002009,1.49e-07,61;CL:0002087,2.56e-07,115;CL:0002032,3.17e-07,161;CL:0000837,3.17e-07,161;CL:0000763,3.77e-07,108;CL:0000049,3.77e-07,108;CL:0000988,4.77e-07,177 | |||
|ontology_enrichment_development_v019=CL:0002057;5.68e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.17e-11!115;UBERON:0002390!1.17e-07!102;UBERON:0003061!1.17e-07!102;UBERON:0004765!1.62e-07!101;UBERON:0001434!1.62e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.33e-11,114;UBERON:0002390,4.04e-08,98;UBERON:0003061,4.04e-08,98;UBERON:0001434,2.23e-07,100;UBERON:0002371,3.28e-07,76;UBERON:0001474,3.85e-07,82;UBERON:0004765,7.63e-07,90 | |||
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| |||
|short_description=p1@FAM204A | |||
}} | |||
Revision as of 11:59, 10 September 2013
| Short description: | p1@FAM204A |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_FAM204A_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000369172, ENST00000369183, ENST00000469758, ENST00000470476, ENST00000487269, NM_001134672, NM_022063, uc001ldo.2, uc010qss.1_5end |
| EntrezGene: | FAM204A |
| HGNC: | 25794 |
| UniProt: | Q9H8W3F2Z2Y3 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| myeloid lineage restricted progenitor cell | 2.02e-10 | 66 |
| classical monocyte | 7.63e-10 | 42 |
| CD14-positive, CD16-negative classical monocyte | 7.63e-10 | 42 |
| myeloid leukocyte | 3.85e-09 | 72 |
| hematopoietic lineage restricted progenitor cell | 1.15e-08 | 120 |
| granulocyte monocyte progenitor cell | 1.72e-08 | 67 |
| leukocyte | 3.27e-08 | 136 |
| defensive cell | 4.59e-08 | 48 |
| phagocyte | 4.59e-08 | 48 |
| monopoietic cell | 6.03e-08 | 59 |
| monocyte | 6.03e-08 | 59 |
| monoblast | 6.03e-08 | 59 |
| promonocyte | 6.03e-08 | 59 |
| hematopoietic stem cell | 6.48e-08 | 168 |
| macrophage dendritic cell progenitor | 1.49e-07 | 61 |
| nongranular leukocyte | 2.56e-07 | 115 |
| hematopoietic oligopotent progenitor cell | 3.17e-07 | 161 |
| hematopoietic multipotent progenitor cell | 3.17e-07 | 161 |
| myeloid cell | 3.77e-07 | 108 |
| common myeloid progenitor | 3.77e-07 | 108 |
| hematopoietic cell | 4.77e-07 | 177 |
| Ontology term | p-value | n |
|---|---|---|
| adult organism | 3.33e-11 | 114 |
| hematopoietic system | 4.04e-08 | 98 |
| blood island | 4.04e-08 | 98 |
| skeletal system | 2.23e-07 | 100 |
| bone marrow | 3.28e-07 | 76 |
| bone element | 3.85e-07 | 82 |
| skeletal element | 7.63e-07 | 90 |
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