FFCP PHASE1:Hg19::chr11:67007535..67007546,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=22992|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13606|TSSclassifier=S|UniProt=D4QA03,E7EMR1,E9PIL6|association_with_transcript=17bp_to_ENST00000308783,ENST00000446134,ENST00000530342_5end|description=CAGE_peak_7_at_KDM2A_5end|id=chr11:67007535..67007546,+|ontology_enrichment_celltype=CL:0000542!1.09e-07!53;CL:0000051!1.09e-07!53;CL:0000838!1.36e-07!52|ontology_enrichment_celltype_v019=CL:0000791;8.18e-10;18!CL:0000789;8.18e-10;18!CL:0002419;8.18e-10;18!CL:0000236;8.94e-09;13!CL:0000624;3.58e-08;6!CL:0000542;3.59e-07;53|ontology_enrichment_celltype_v019_2=CL:0000838,2.05e-11,52;CL:0000542,5.00e-11,53;CL:0000051,5.00e-11,53;CL:0000791,5.24e-10,18;CL:0000789,5.24e-10,18;CL:0002420,5.24e-10,18;CL:0002419,5.24e-10,18;CL:0000790,5.24e-10,18;CL:0000624,2.09e-08,6;CL:0000236,2.60e-08,14;CL:0000738,9.80e-08,136;CL:0000037,9.02e-07,168|ontology_enrichment_development_v019=CL:0000790;8.18e-10;18!CL:0000051;3.59e-07;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.00e-11!115;UBERON:0002780!5.68e-08!41;UBERON:0001890!5.68e-08!41;UBERON:0006240!5.68e-08!41;UBERON:0003080!2.40e-07!42;UBERON:0001950!5.71e-07!20;UBERON:0002619!9.00e-07!22;UBERON:0000955!9.06e-07!69;UBERON:0006238!9.06e-07!69;UBERON:0001869!9.76e-07!32|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002780,1.96e-07,41;UBERON:0001890,1.96e-07,41;UBERON:0003080,1.96e-07,41;UBERON:0006240,1.96e-07,41;UBERON:0002791,5.48e-07,32;UBERON:0001869,5.48e-07,32;UBERON:0001950,6.77e-07,20|phase1_expression=0.181678379270557,0,0.845726424575827,1.0007329835313,0,0,0,0,0.261185628199839,0.491467873003018,0,0.436882744260345,0,0.37129905888014,0.662794751455832,0,0.602694528023977,0,1.46379839637152,0.123121058076788,0.612002073732759,0.313454721478088,0,0.136874425072884,0.251085279189606,1.45185470921107,0.246301768349837,0.787107813136792,0.786728553697808,2.30297638858328,1.08371286321253,0.919421224478927,0.6024118375565,0,0.387336002901508,0.426507697462265,0,1.10799081706375,1.40381113229099,3.68918480216948,0,0.971680998056939,0.257575567634187,0,0,0.970336244751265,0.232429036905685,0,0.309706370895104,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0.316462387440884,0.845021145247767,1.27562579979026,0.419317291016752,0.22465726229299,0.300353785683013,0.64290234678832,0.570025487482497,0.79566670879636,0.182664153764634,1.75996244461323,1.09227722252426,5.33705552318133,1.70692089026603,1.60158394814405,1.72425731986345,1.32208974556972,0.954053754535364,2.84606484554724,7.6340834618222,4.96955196562797,2.64342657158052,1.68152568894461,0.526768169550154,7.08155172409799,9.82526906872912,4.11202997999018,1.33749196312542,2.60737813306872,2.8406868344084,1.94826728407911,1.44833593950726,2.06224135232386,1.99380505125259,2.43723477388514,1.28091319725675,1.04047478047903,0.657751618414705,0.552700035571697,2.31842468588042,3.55887751588945,2.40786745280742,5.22677619024884,1.0197840842781,1.91610246800961,2.74901956386104,3.03623630423403,2.54852331459277,0.651083453856419,0,1.6563263098555,0.511946444617674,1.24930726552346,0.473554504088034,2.46338399076314,5.04016858061831,4.54648332831962,5.64815175142916,0,0.670700859703636,0,0.361439152384566,0.50133791063589,0,0,0,0.283604451492204,1.33037638477538,0.175669571386252,0.392937226493138,0.364295288292542,0.370784442784429,0.649094787309367,0.348259474598534,0.531831842075461,0.715471872916026,1.71598473234038,3.34311751196608,0,0.860234595106124,0.347140501607594,0.56530794192401,0.419499436209906,0.275118041940067,0.208994966536811,0.258416759169329,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0.506522046658319,0.264818361626438,0.286836620748814,0,0.560677600142307,0,0,0.933633106199299,0,0.490385709340376,0.151357427644931,0,0.468642863667593,0,1.71141546463335,0.448346041655403,0,0.161872944368132,0.280901613404497,0,0.122834317311768,0.103325781175765,1.18800285728205,0,0.910161361938026,0,0.168336113954066,0.125118519871964,0.554128230968366,0,0,0.300476117813194,0,0.717558542755448,0,0.211931901159562,0.900273288253207,0.206105058476878,0.515281080091258,0.18611685633159,0.675105328965065,0.194874010322397,0.252433774244115,0,0,0.710019185033229,0,0.508681776931463,0.773043412653187,0.545492241181669,0,0.609868530647977,0.662648841607426,0.464775771478074,0.829288440122964,0.504641701751257,0,0,0,0,0,0.721879481669586,0.118306800039844,0.168584690078102,0.482022059766964,0.55146986366197,0.217879444092406,0.474541238222193,0.134831308160164,0.588664395376038,1.15424147083917,0,0,0,0,1.26755034821831,0.982827216677626,0.590789906681404,0.441463099414651,0.983907508344908,0.343135620597051,0.329250856225877,0,0.402115889646523,0.370353780634118,0.325808305310325,0,0,0.115930404975077,0.117408694235822,0,0,0,0.7902043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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=22992 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13606 | |||
|TSSclassifier=S | |||
|UniProt=D4QA03,E7EMR1,E9PIL6 | |||
|association_with_transcript=17bp_to_ENST00000308783,ENST00000446134,ENST00000530342_5end | |||
|description=CAGE_peak_7_at_KDM2A_5end | |||
|id=chr11:67007535..67007546,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.09e-07!53;CL:0000051!1.09e-07!53;CL:0000838!1.36e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;8.18e-10;18!CL:0000789;8.18e-10;18!CL:0002419;8.18e-10;18!CL:0000236;8.94e-09;13!CL:0000624;3.58e-08;6!CL:0000542;3.59e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,2.05e-11,52;CL:0000542,5.00e-11,53;CL:0000051,5.00e-11,53;CL:0000791,5.24e-10,18;CL:0000789,5.24e-10,18;CL:0002420,5.24e-10,18;CL:0002419,5.24e-10,18;CL:0000790,5.24e-10,18;CL:0000624,2.09e-08,6;CL:0000236,2.60e-08,14;CL:0000738,9.80e-08,136;CL:0000037,9.02e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;8.18e-10;18!CL:0000051;3.59e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.00e-11!115;UBERON:0002780!5.68e-08!41;UBERON:0001890!5.68e-08!41;UBERON:0006240!5.68e-08!41;UBERON:0003080!2.40e-07!42;UBERON:0001950!5.71e-07!20;UBERON:0002619!9.00e-07!22;UBERON:0000955!9.06e-07!69;UBERON:0006238!9.06e-07!69;UBERON:0001869!9.76e-07!32 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002780,1.96e-07,41;UBERON:0001890,1.96e-07,41;UBERON:0003080,1.96e-07,41;UBERON:0006240,1.96e-07,41;UBERON:0002791,5.48e-07,32;UBERON:0001869,5.48e-07,32;UBERON:0001950,6.77e-07,20 | |||
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| |||
|short_description=p7@KDM2A | |||
}} |
Revision as of 19:13, 10 September 2013
Short description: | p7@KDM2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_KDM2A_5end |
Coexpression cluster: | NA |
Association with transcript: | 17bp_to_ENST00000308783, ENST00000446134, ENST00000530342_5end |
EntrezGene: | KDM2A |
HGNC: | 13606 |
UniProt: | D4QA03E7EMR1E9PIL6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 2.05e-11 | 52 |
lymphocyte | 5.00e-11 | 53 |
common lymphoid progenitor | 5.00e-11 | 53 |
mature alpha-beta T cell | 5.24e-10 | 18 |
alpha-beta T cell | 5.24e-10 | 18 |
immature T cell | 5.24e-10 | 18 |
mature T cell | 5.24e-10 | 18 |
immature alpha-beta T cell | 5.24e-10 | 18 |
CD4-positive, alpha-beta T cell | 2.09e-08 | 6 |
B cell | 2.60e-08 | 14 |
leukocyte | 9.80e-08 | 136 |
hematopoietic stem cell | 9.02e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
regional part of forebrain | 1.96e-07 | 41 |
forebrain | 1.96e-07 | 41 |
anterior neural tube | 1.96e-07 | 41 |
future forebrain | 1.96e-07 | 41 |
regional part of telencephalon | 5.48e-07 | 32 |
cerebral hemisphere | 5.48e-07 | 32 |
neocortex | 6.77e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.